Calcium in PDB 6qz2: Structure of Mhetase From Ideonella Sakaiensis
Enzymatic activity of Structure of Mhetase From Ideonella Sakaiensis
All present enzymatic activity of Structure of Mhetase From Ideonella Sakaiensis:
3.1.1.102;
Protein crystallography data
The structure of Structure of Mhetase From Ideonella Sakaiensis, PDB code: 6qz2
was solved by
M.D.Allen,
C.W.Johnson,
B.C.Knott,
G.T.Beckham,
J.E.Mcgeehan,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
|
Resolution Low / High (Å)
|
57.62 /
1.90
|
|
Space group
|
P 1
|
|
Cell size a, b, c (Å), α, β, γ (°)
|
110.490,
135.630,
138.150,
83.09,
67.91,
67.57
|
|
R / Rfree (%)
|
18.5 /
20.5
|
Calcium Binding Sites:
The binding sites of Calcium atom in the Structure of Mhetase From Ideonella Sakaiensis
(pdb code 6qz2). This binding sites where shown within
5.0 Angstroms radius around Calcium atom.
In total 10 binding sites of Calcium where determined in the
Structure of Mhetase From Ideonella Sakaiensis, PDB code: 6qz2:
Jump to Calcium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Calcium binding site 1 out
of 10 in 6qz2
Go back to
Calcium Binding Sites List in 6qz2
Calcium binding site 1 out
of 10 in the Structure of Mhetase From Ideonella Sakaiensis
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 1 of Structure of Mhetase From Ideonella Sakaiensis within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca801
b:21.8
occ:1.00
|
O
|
A:ILE313
|
2.4
|
22.0
|
1.0
|
|
O
|
A:LEU309
|
2.4
|
23.6
|
1.0
|
|
OD2
|
A:ASP307
|
2.4
|
20.3
|
1.0
|
|
OD1
|
A:ASP304
|
2.5
|
24.3
|
1.0
|
|
O
|
A:ASP304
|
2.5
|
24.2
|
1.0
|
|
O
|
A:HOH911
|
2.5
|
21.8
|
1.0
|
|
OD1
|
A:ASP311
|
2.6
|
20.8
|
1.0
|
|
OD1
|
A:ASP307
|
2.6
|
20.3
|
1.0
|
|
CG
|
A:ASP307
|
2.9
|
22.3
|
1.0
|
|
C
|
A:ASP304
|
3.5
|
24.9
|
1.0
|
|
CG
|
A:ASP311
|
3.5
|
24.2
|
1.0
|
|
C
|
A:ILE313
|
3.6
|
21.2
|
1.0
|
|
C
|
A:LEU309
|
3.6
|
28.7
|
1.0
|
|
CG
|
A:ASP304
|
3.7
|
23.6
|
1.0
|
|
OD2
|
A:ASP311
|
4.0
|
23.6
|
1.0
|
|
CA
|
A:ASP304
|
4.1
|
22.9
|
1.0
|
|
N
|
A:ASP311
|
4.1
|
22.0
|
1.0
|
|
OD2
|
A:ASP315
|
4.2
|
29.0
|
1.0
|
|
N
|
A:ILE313
|
4.2
|
19.8
|
1.0
|
|
CA
|
A:ILE313
|
4.3
|
18.6
|
1.0
|
|
CB
|
A:ASP307
|
4.4
|
19.8
|
1.0
|
|
CB
|
A:ASP304
|
4.5
|
23.2
|
1.0
|
|
O
|
A:HOH1132
|
4.5
|
20.8
|
1.0
|
|
CA
|
A:LEU309
|
4.5
|
23.1
|
1.0
|
|
N
|
A:ALA310
|
4.5
|
27.8
|
1.0
|
|
N
|
A:LEU309
|
4.6
|
21.9
|
1.0
|
|
N
|
A:ASP315
|
4.6
|
20.7
|
1.0
|
|
CA
|
A:ALA310
|
4.6
|
26.5
|
1.0
|
|
N
|
A:VAL314
|
4.6
|
19.8
|
1.0
|
|
N
|
A:ALA305
|
4.6
|
24.8
|
1.0
|
|
OD2
|
A:ASP304
|
4.6
|
22.8
|
1.0
|
|
CB
|
A:ILE313
|
4.6
|
20.3
|
1.0
|
|
CB
|
A:ASP311
|
4.7
|
21.5
|
1.0
|
|
CB
|
A:LEU309
|
4.7
|
24.1
|
1.0
|
|
CA
|
A:VAL314
|
4.7
|
18.9
|
1.0
|
|
C
|
A:ALA310
|
4.8
|
24.0
|
1.0
|
|
O
|
A:HOH1389
|
4.8
|
27.3
|
1.0
|
|
CA
|
A:ASP311
|
4.8
|
23.2
|
1.0
|
|
CA
|
A:ALA305
|
4.9
|
25.8
|
1.0
|
|
Calcium binding site 2 out
of 10 in 6qz2
Go back to
Calcium Binding Sites List in 6qz2
Calcium binding site 2 out
of 10 in the Structure of Mhetase From Ideonella Sakaiensis
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 2 of Structure of Mhetase From Ideonella Sakaiensis within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ca801
b:51.8
occ:1.00
|
O
|
B:LEU309
|
2.4
|
22.4
|
1.0
|
|
O
|
B:ILE313
|
2.4
|
16.5
|
1.0
|
|
O
|
B:ASP304
|
2.4
|
20.6
|
1.0
|
|
O
|
B:HOH1034
|
2.5
|
24.0
|
1.0
|
|
OD1
|
B:ASP304
|
2.5
|
18.1
|
1.0
|
|
OD2
|
B:ASP307
|
2.5
|
17.2
|
1.0
|
|
OD1
|
B:ASP311
|
2.6
|
20.2
|
1.0
|
|
OD1
|
B:ASP307
|
2.7
|
20.4
|
1.0
|
|
CG
|
B:ASP307
|
2.9
|
18.8
|
1.0
|
|
C
|
B:ASP304
|
3.5
|
22.5
|
1.0
|
|
CG
|
B:ASP311
|
3.6
|
20.2
|
1.0
|
|
C
|
B:LEU309
|
3.6
|
27.6
|
1.0
|
|
C
|
B:ILE313
|
3.6
|
17.6
|
1.0
|
|
CG
|
B:ASP304
|
3.7
|
19.8
|
1.0
|
|
OD2
|
B:ASP311
|
4.0
|
20.2
|
1.0
|
|
CA
|
B:ASP304
|
4.1
|
20.4
|
1.0
|
|
N
|
B:ASP311
|
4.1
|
17.9
|
1.0
|
|
N
|
B:ILE313
|
4.3
|
21.7
|
1.0
|
|
O
|
B:HOH961
|
4.4
|
17.2
|
1.0
|
|
CA
|
B:ILE313
|
4.4
|
16.6
|
1.0
|
|
CB
|
B:ASP307
|
4.5
|
19.4
|
1.0
|
|
OD2
|
B:ASP315
|
4.5
|
24.2
|
1.0
|
|
CB
|
B:ASP304
|
4.5
|
21.8
|
1.0
|
|
N
|
B:ALA305
|
4.5
|
25.1
|
1.0
|
|
CA
|
B:LEU309
|
4.5
|
25.3
|
1.0
|
|
N
|
B:ALA310
|
4.6
|
19.4
|
1.0
|
|
CA
|
B:ALA310
|
4.6
|
21.1
|
1.0
|
|
N
|
B:LEU309
|
4.6
|
27.3
|
1.0
|
|
N
|
B:ASP315
|
4.6
|
14.3
|
1.0
|
|
OD2
|
B:ASP304
|
4.6
|
20.6
|
1.0
|
|
N
|
B:VAL314
|
4.6
|
15.8
|
1.0
|
|
CB
|
B:LEU309
|
4.7
|
20.0
|
1.0
|
|
CB
|
B:ASP311
|
4.7
|
16.8
|
1.0
|
|
C
|
B:ALA310
|
4.8
|
21.3
|
1.0
|
|
CB
|
B:ILE313
|
4.8
|
19.4
|
1.0
|
|
CA
|
B:ALA305
|
4.8
|
24.4
|
1.0
|
|
CA
|
B:VAL314
|
4.8
|
16.7
|
1.0
|
|
CA
|
B:ASP311
|
4.8
|
18.1
|
1.0
|
|
N
|
B:GLY312
|
4.9
|
15.0
|
1.0
|
|
Calcium binding site 3 out
of 10 in 6qz2
Go back to
Calcium Binding Sites List in 6qz2
Calcium binding site 3 out
of 10 in the Structure of Mhetase From Ideonella Sakaiensis
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 3 of Structure of Mhetase From Ideonella Sakaiensis within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Ca801
b:19.4
occ:1.00
|
O
|
C:ILE313
|
2.4
|
19.3
|
1.0
|
|
OD1
|
C:ASP304
|
2.4
|
22.8
|
1.0
|
|
O
|
C:LEU309
|
2.4
|
23.3
|
1.0
|
|
OD1
|
C:ASP311
|
2.5
|
22.1
|
1.0
|
|
O
|
C:ASP304
|
2.5
|
20.3
|
1.0
|
|
OD1
|
C:ASP307
|
2.6
|
24.4
|
1.0
|
|
OD2
|
C:ASP307
|
2.6
|
20.3
|
1.0
|
|
O
|
C:HOH943
|
2.6
|
20.3
|
1.0
|
|
CG
|
C:ASP307
|
2.9
|
20.6
|
1.0
|
|
C
|
C:ASP304
|
3.5
|
25.6
|
1.0
|
|
CG
|
C:ASP311
|
3.5
|
25.1
|
1.0
|
|
C
|
C:ILE313
|
3.6
|
20.3
|
1.0
|
|
CG
|
C:ASP304
|
3.6
|
22.4
|
1.0
|
|
C
|
C:LEU309
|
3.6
|
24.3
|
1.0
|
|
OD2
|
C:ASP311
|
4.0
|
23.3
|
1.0
|
|
CA
|
C:ASP304
|
4.0
|
21.4
|
1.0
|
|
N
|
C:ASP311
|
4.0
|
22.3
|
1.0
|
|
N
|
C:ILE313
|
4.1
|
17.7
|
1.0
|
|
CA
|
C:ILE313
|
4.3
|
17.2
|
1.0
|
|
OD2
|
C:ASP315
|
4.3
|
23.1
|
1.0
|
|
O
|
C:HOH978
|
4.4
|
17.5
|
1.0
|
|
CB
|
C:ASP307
|
4.4
|
23.0
|
1.0
|
|
CB
|
C:ASP304
|
4.4
|
21.7
|
1.0
|
|
OD2
|
C:ASP304
|
4.5
|
22.8
|
1.0
|
|
N
|
C:ALA305
|
4.5
|
22.8
|
1.0
|
|
CA
|
C:LEU309
|
4.5
|
26.3
|
1.0
|
|
N
|
C:ALA310
|
4.6
|
27.2
|
1.0
|
|
N
|
C:VAL314
|
4.6
|
17.1
|
1.0
|
|
N
|
C:LEU309
|
4.6
|
23.4
|
1.0
|
|
CA
|
C:ALA310
|
4.6
|
22.6
|
1.0
|
|
CB
|
C:ILE313
|
4.6
|
17.1
|
1.0
|
|
N
|
C:ASP315
|
4.6
|
20.2
|
1.0
|
|
CB
|
C:ASP311
|
4.7
|
20.7
|
1.0
|
|
CB
|
C:LEU309
|
4.7
|
23.0
|
1.0
|
|
CA
|
C:VAL314
|
4.8
|
18.3
|
1.0
|
|
CA
|
C:ASP311
|
4.8
|
25.1
|
1.0
|
|
C
|
C:ALA310
|
4.8
|
26.5
|
1.0
|
|
CA
|
C:ALA305
|
4.8
|
24.5
|
1.0
|
|
N
|
C:GLY312
|
4.9
|
22.6
|
1.0
|
|
O
|
C:HOH1347
|
4.9
|
35.6
|
1.0
|
|
Calcium binding site 4 out
of 10 in 6qz2
Go back to
Calcium Binding Sites List in 6qz2
Calcium binding site 4 out
of 10 in the Structure of Mhetase From Ideonella Sakaiensis
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 4 of Structure of Mhetase From Ideonella Sakaiensis within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Ca801
b:20.2
occ:1.00
|
O
|
D:LEU309
|
2.4
|
20.0
|
1.0
|
|
O
|
D:ASP304
|
2.4
|
19.8
|
1.0
|
|
OD1
|
D:ASP304
|
2.4
|
19.2
|
1.0
|
|
O
|
D:ILE313
|
2.4
|
20.1
|
1.0
|
|
O
|
D:HOH1027
|
2.5
|
23.1
|
1.0
|
|
OD1
|
D:ASP311
|
2.5
|
20.9
|
1.0
|
|
OD2
|
D:ASP307
|
2.5
|
17.9
|
1.0
|
|
OD1
|
D:ASP307
|
2.6
|
19.5
|
1.0
|
|
CG
|
D:ASP307
|
2.9
|
22.4
|
1.0
|
|
C
|
D:ASP304
|
3.4
|
19.8
|
1.0
|
|
CG
|
D:ASP311
|
3.5
|
20.3
|
1.0
|
|
C
|
D:LEU309
|
3.6
|
23.8
|
1.0
|
|
CG
|
D:ASP304
|
3.7
|
21.4
|
1.0
|
|
C
|
D:ILE313
|
3.7
|
19.9
|
1.0
|
|
OD2
|
D:ASP311
|
4.0
|
22.2
|
1.0
|
|
N
|
D:ASP311
|
4.0
|
19.4
|
1.0
|
|
CA
|
D:ASP304
|
4.0
|
18.4
|
1.0
|
|
N
|
D:ILE313
|
4.3
|
17.4
|
1.0
|
|
O
|
D:HOH989
|
4.4
|
14.9
|
1.0
|
|
CA
|
D:ILE313
|
4.4
|
21.1
|
1.0
|
|
CB
|
D:ASP304
|
4.4
|
23.6
|
1.0
|
|
CB
|
D:ASP307
|
4.5
|
20.6
|
1.0
|
|
N
|
D:ALA305
|
4.5
|
22.4
|
1.0
|
|
N
|
D:ALA310
|
4.5
|
23.5
|
1.0
|
|
OD2
|
D:ASP315
|
4.5
|
27.4
|
1.0
|
|
CA
|
D:ALA310
|
4.5
|
21.8
|
1.0
|
|
CA
|
D:LEU309
|
4.5
|
22.0
|
1.0
|
|
OD2
|
D:ASP304
|
4.6
|
21.4
|
1.0
|
|
N
|
D:LEU309
|
4.6
|
21.9
|
1.0
|
|
CB
|
D:ASP311
|
4.6
|
19.3
|
1.0
|
|
C
|
D:ALA310
|
4.7
|
25.2
|
1.0
|
|
N
|
D:VAL314
|
4.7
|
19.6
|
1.0
|
|
N
|
D:ASP315
|
4.7
|
19.2
|
1.0
|
|
CA
|
D:ALA305
|
4.7
|
24.2
|
1.0
|
|
CB
|
D:LEU309
|
4.7
|
23.0
|
1.0
|
|
CB
|
D:ILE313
|
4.7
|
18.5
|
1.0
|
|
CA
|
D:VAL314
|
4.8
|
16.6
|
1.0
|
|
CA
|
D:ASP311
|
4.8
|
16.4
|
1.0
|
|
N
|
D:GLY312
|
4.9
|
16.1
|
1.0
|
|
O
|
D:HOH1288
|
5.0
|
26.6
|
1.0
|
|
Calcium binding site 5 out
of 10 in 6qz2
Go back to
Calcium Binding Sites List in 6qz2
Calcium binding site 5 out
of 10 in the Structure of Mhetase From Ideonella Sakaiensis
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 5 of Structure of Mhetase From Ideonella Sakaiensis within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Ca801
b:21.5
occ:1.00
|
O
|
E:LEU309
|
2.4
|
23.3
|
1.0
|
|
O
|
E:ILE313
|
2.4
|
21.3
|
1.0
|
|
O
|
E:ASP304
|
2.5
|
22.1
|
1.0
|
|
OD2
|
E:ASP307
|
2.5
|
19.8
|
1.0
|
|
OD1
|
E:ASP304
|
2.5
|
22.1
|
1.0
|
|
OD1
|
E:ASP311
|
2.5
|
21.4
|
1.0
|
|
O
|
E:HOH915
|
2.5
|
21.1
|
1.0
|
|
OD1
|
E:ASP307
|
2.6
|
25.2
|
1.0
|
|
CG
|
E:ASP307
|
2.9
|
24.5
|
1.0
|
|
C
|
E:ASP304
|
3.5
|
23.9
|
1.0
|
|
CG
|
E:ASP311
|
3.6
|
21.0
|
1.0
|
|
C
|
E:LEU309
|
3.6
|
25.1
|
1.0
|
|
C
|
E:ILE313
|
3.6
|
22.1
|
1.0
|
|
CG
|
E:ASP304
|
3.7
|
18.3
|
1.0
|
|
OD2
|
E:ASP311
|
4.0
|
20.1
|
1.0
|
|
CA
|
E:ASP304
|
4.0
|
17.8
|
1.0
|
|
N
|
E:ASP311
|
4.1
|
23.0
|
1.0
|
|
N
|
E:ILE313
|
4.2
|
19.2
|
1.0
|
|
OD2
|
E:ASP315
|
4.3
|
27.6
|
1.0
|
|
CA
|
E:ILE313
|
4.4
|
18.1
|
1.0
|
|
CB
|
E:ASP307
|
4.4
|
18.3
|
1.0
|
|
CA
|
E:LEU309
|
4.4
|
23.6
|
1.0
|
|
O
|
E:HOH1079
|
4.5
|
17.9
|
1.0
|
|
CB
|
E:ASP304
|
4.5
|
21.7
|
1.0
|
|
N
|
E:LEU309
|
4.5
|
22.6
|
1.0
|
|
N
|
E:ALA310
|
4.5
|
23.2
|
1.0
|
|
N
|
E:ALA305
|
4.6
|
22.0
|
1.0
|
|
CA
|
E:ALA310
|
4.6
|
22.9
|
1.0
|
|
CB
|
E:LEU309
|
4.6
|
22.0
|
1.0
|
|
N
|
E:ASP315
|
4.6
|
17.3
|
1.0
|
|
N
|
E:VAL314
|
4.6
|
17.8
|
1.0
|
|
OD2
|
E:ASP304
|
4.6
|
20.8
|
1.0
|
|
CB
|
E:ILE313
|
4.7
|
18.3
|
1.0
|
|
CB
|
E:ASP311
|
4.7
|
21.1
|
1.0
|
|
CA
|
E:VAL314
|
4.8
|
20.2
|
1.0
|
|
C
|
E:ALA310
|
4.8
|
26.2
|
1.0
|
|
CA
|
E:ALA305
|
4.8
|
23.2
|
1.0
|
|
CA
|
E:ASP311
|
4.9
|
21.1
|
1.0
|
|
N
|
E:GLY312
|
5.0
|
22.4
|
1.0
|
|
Calcium binding site 6 out
of 10 in 6qz2
Go back to
Calcium Binding Sites List in 6qz2
Calcium binding site 6 out
of 10 in the Structure of Mhetase From Ideonella Sakaiensis
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 6 of Structure of Mhetase From Ideonella Sakaiensis within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
F:Ca801
b:23.5
occ:1.00
|
O
|
F:ILE313
|
2.3
|
18.1
|
1.0
|
|
OD1
|
F:ASP304
|
2.4
|
21.8
|
1.0
|
|
O
|
F:LEU309
|
2.5
|
24.2
|
1.0
|
|
O
|
F:HOH933
|
2.5
|
24.6
|
1.0
|
|
OD2
|
F:ASP307
|
2.5
|
19.9
|
1.0
|
|
OD1
|
F:ASP311
|
2.5
|
25.1
|
1.0
|
|
O
|
F:ASP304
|
2.5
|
23.2
|
1.0
|
|
OD1
|
F:ASP307
|
2.6
|
26.5
|
1.0
|
|
CG
|
F:ASP307
|
2.9
|
23.6
|
1.0
|
|
C
|
F:ASP304
|
3.5
|
26.0
|
1.0
|
|
C
|
F:ILE313
|
3.5
|
19.7
|
1.0
|
|
CG
|
F:ASP311
|
3.6
|
28.1
|
1.0
|
|
CG
|
F:ASP304
|
3.7
|
26.5
|
1.0
|
|
C
|
F:LEU309
|
3.7
|
23.6
|
1.0
|
|
CA
|
F:ASP304
|
4.0
|
22.4
|
1.0
|
|
N
|
F:ASP311
|
4.0
|
24.2
|
1.0
|
|
OD2
|
F:ASP311
|
4.0
|
24.7
|
1.0
|
|
N
|
F:ILE313
|
4.2
|
19.6
|
1.0
|
|
CA
|
F:ILE313
|
4.3
|
19.0
|
1.0
|
|
OD2
|
F:ASP315
|
4.4
|
26.2
|
1.0
|
|
CB
|
F:ASP307
|
4.4
|
27.0
|
1.0
|
|
CB
|
F:ASP304
|
4.5
|
19.4
|
1.0
|
|
N
|
F:VAL314
|
4.5
|
18.2
|
1.0
|
|
O
|
F:HOH1104
|
4.5
|
17.9
|
1.0
|
|
OD2
|
F:ASP304
|
4.6
|
23.8
|
1.0
|
|
CA
|
F:LEU309
|
4.6
|
26.4
|
1.0
|
|
N
|
F:ALA310
|
4.6
|
27.8
|
1.0
|
|
N
|
F:ASP315
|
4.6
|
19.0
|
1.0
|
|
N
|
F:ALA305
|
4.6
|
25.3
|
1.0
|
|
CA
|
F:ALA310
|
4.6
|
25.8
|
1.0
|
|
N
|
F:LEU309
|
4.6
|
29.5
|
1.0
|
|
CA
|
F:VAL314
|
4.7
|
19.0
|
1.0
|
|
CB
|
F:ILE313
|
4.7
|
17.4
|
1.0
|
|
CB
|
F:ASP311
|
4.7
|
25.8
|
1.0
|
|
CB
|
F:LEU309
|
4.8
|
27.0
|
1.0
|
|
CA
|
F:ASP311
|
4.8
|
27.9
|
1.0
|
|
C
|
F:ALA310
|
4.8
|
29.8
|
1.0
|
|
N
|
F:GLY312
|
4.9
|
20.0
|
1.0
|
|
CA
|
F:ALA305
|
4.9
|
27.2
|
1.0
|
|
Calcium binding site 7 out
of 10 in 6qz2
Go back to
Calcium Binding Sites List in 6qz2
Calcium binding site 7 out
of 10 in the Structure of Mhetase From Ideonella Sakaiensis
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 7 of Structure of Mhetase From Ideonella Sakaiensis within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
G:Ca801
b:25.1
occ:1.00
|
O
|
G:LEU309
|
2.3
|
20.0
|
1.0
|
|
O
|
G:ILE313
|
2.4
|
20.2
|
1.0
|
|
OD1
|
G:ASP304
|
2.5
|
23.7
|
1.0
|
|
OD1
|
G:ASP307
|
2.5
|
28.8
|
1.0
|
|
O
|
G:HOH962
|
2.5
|
26.0
|
1.0
|
|
OD1
|
G:ASP311
|
2.5
|
19.5
|
1.0
|
|
OD2
|
G:ASP307
|
2.6
|
25.3
|
1.0
|
|
O
|
G:ASP304
|
2.6
|
24.6
|
1.0
|
|
CG
|
G:ASP307
|
2.9
|
28.0
|
1.0
|
|
CG
|
G:ASP311
|
3.5
|
21.8
|
1.0
|
|
C
|
G:LEU309
|
3.5
|
26.8
|
1.0
|
|
C
|
G:ASP304
|
3.6
|
27.1
|
1.0
|
|
C
|
G:ILE313
|
3.7
|
22.8
|
1.0
|
|
CG
|
G:ASP304
|
3.7
|
21.9
|
1.0
|
|
OD2
|
G:ASP311
|
4.0
|
24.2
|
1.0
|
|
N
|
G:ASP311
|
4.0
|
25.1
|
1.0
|
|
CA
|
G:ASP304
|
4.1
|
22.6
|
1.0
|
|
N
|
G:ILE313
|
4.3
|
18.6
|
1.0
|
|
CB
|
G:ASP307
|
4.4
|
25.2
|
1.0
|
|
CA
|
G:LEU309
|
4.4
|
24.1
|
1.0
|
|
N
|
G:ALA310
|
4.5
|
20.8
|
1.0
|
|
CA
|
G:ILE313
|
4.5
|
22.5
|
1.0
|
|
N
|
G:LEU309
|
4.5
|
24.2
|
1.0
|
|
OD2
|
G:ASP315
|
4.5
|
31.7
|
1.0
|
|
CB
|
G:ASP304
|
4.5
|
22.1
|
1.0
|
|
CA
|
G:ALA310
|
4.5
|
23.4
|
1.0
|
|
OD2
|
G:ASP304
|
4.5
|
24.3
|
1.0
|
|
O
|
G:HOH1101
|
4.6
|
26.0
|
1.0
|
|
N
|
G:ALA305
|
4.6
|
26.7
|
1.0
|
|
CB
|
G:LEU309
|
4.6
|
27.0
|
1.0
|
|
N
|
G:VAL314
|
4.6
|
21.1
|
1.0
|
|
N
|
G:ASP315
|
4.7
|
22.4
|
1.0
|
|
CB
|
G:ASP311
|
4.7
|
23.2
|
1.0
|
|
CA
|
G:VAL314
|
4.8
|
22.3
|
1.0
|
|
C
|
G:ALA310
|
4.8
|
26.2
|
1.0
|
|
CB
|
G:ILE313
|
4.8
|
21.8
|
1.0
|
|
CA
|
G:ASP311
|
4.8
|
23.6
|
1.0
|
|
CA
|
G:ALA305
|
4.9
|
26.5
|
1.0
|
|
Calcium binding site 8 out
of 10 in 6qz2
Go back to
Calcium Binding Sites List in 6qz2
Calcium binding site 8 out
of 10 in the Structure of Mhetase From Ideonella Sakaiensis
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 8 of Structure of Mhetase From Ideonella Sakaiensis within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
H:Ca801
b:26.5
occ:1.00
|
O
|
H:LEU309
|
2.4
|
30.7
|
1.0
|
|
OD1
|
H:ASP304
|
2.4
|
30.8
|
1.0
|
|
O
|
H:ILE313
|
2.4
|
21.7
|
1.0
|
|
O
|
H:HOH969
|
2.4
|
32.3
|
1.0
|
|
O
|
H:ASP304
|
2.5
|
29.8
|
1.0
|
|
OD1
|
H:ASP307
|
2.5
|
32.3
|
1.0
|
|
OD2
|
H:ASP307
|
2.5
|
31.5
|
1.0
|
|
OD1
|
H:ASP311
|
2.6
|
22.6
|
1.0
|
|
CG
|
H:ASP307
|
2.9
|
34.0
|
1.0
|
|
C
|
H:ASP304
|
3.4
|
32.5
|
1.0
|
|
C
|
H:LEU309
|
3.6
|
34.9
|
1.0
|
|
CG
|
H:ASP304
|
3.6
|
27.8
|
1.0
|
|
C
|
H:ILE313
|
3.6
|
31.0
|
1.0
|
|
CG
|
H:ASP311
|
3.7
|
25.8
|
1.0
|
|
CA
|
H:ASP304
|
4.0
|
30.4
|
1.0
|
|
N
|
H:ASP311
|
4.1
|
29.1
|
1.0
|
|
OD2
|
H:ASP311
|
4.1
|
26.8
|
1.0
|
|
N
|
H:ILE313
|
4.2
|
24.1
|
1.0
|
|
CA
|
H:ILE313
|
4.4
|
25.7
|
1.0
|
|
CB
|
H:ASP307
|
4.4
|
32.9
|
1.0
|
|
CB
|
H:ASP304
|
4.4
|
29.4
|
1.0
|
|
OD2
|
H:ASP315
|
4.4
|
38.9
|
1.0
|
|
CA
|
H:LEU309
|
4.4
|
31.7
|
1.0
|
|
O
|
H:HOH1001
|
4.4
|
31.9
|
1.0
|
|
OD2
|
H:ASP304
|
4.5
|
31.0
|
1.0
|
|
N
|
H:ALA310
|
4.5
|
26.1
|
1.0
|
|
N
|
H:LEU309
|
4.5
|
32.8
|
1.0
|
|
N
|
H:ALA305
|
4.5
|
34.6
|
1.0
|
|
CA
|
H:ALA310
|
4.5
|
29.0
|
1.0
|
|
N
|
H:VAL314
|
4.6
|
22.9
|
1.0
|
|
N
|
H:ASP315
|
4.6
|
28.6
|
1.0
|
|
CB
|
H:LEU309
|
4.6
|
30.4
|
1.0
|
|
CB
|
H:ILE313
|
4.7
|
23.7
|
1.0
|
|
CA
|
H:VAL314
|
4.8
|
26.4
|
1.0
|
|
CB
|
H:ASP311
|
4.8
|
25.3
|
1.0
|
|
CA
|
H:ALA305
|
4.8
|
34.9
|
1.0
|
|
C
|
H:ALA310
|
4.9
|
33.8
|
1.0
|
|
CA
|
H:ASP311
|
4.9
|
25.8
|
1.0
|
|
N
|
H:GLY312
|
4.9
|
23.6
|
1.0
|
|
N
|
H:ASP307
|
5.0
|
32.1
|
1.0
|
|
Calcium binding site 9 out
of 10 in 6qz2
Go back to
Calcium Binding Sites List in 6qz2
Calcium binding site 9 out
of 10 in the Structure of Mhetase From Ideonella Sakaiensis
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 9 of Structure of Mhetase From Ideonella Sakaiensis within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
I:Ca801
b:47.8
occ:1.00
|
O
|
I:HOH963
|
2.1
|
48.6
|
1.0
|
|
OD1
|
I:ASP304
|
2.2
|
47.0
|
1.0
|
|
O
|
I:ASP304
|
2.3
|
51.5
|
1.0
|
|
O
|
I:LEU309
|
2.3
|
56.3
|
1.0
|
|
O
|
I:ILE313
|
2.4
|
53.2
|
1.0
|
|
OD2
|
I:ASP307
|
2.6
|
52.5
|
1.0
|
|
OD1
|
I:ASP311
|
2.6
|
51.4
|
1.0
|
|
OD1
|
I:ASP307
|
2.7
|
58.6
|
1.0
|
|
CG
|
I:ASP307
|
3.0
|
56.5
|
1.0
|
|
C
|
I:ASP304
|
3.3
|
55.1
|
1.0
|
|
CG
|
I:ASP304
|
3.4
|
52.3
|
1.0
|
|
C
|
I:LEU309
|
3.5
|
58.2
|
1.0
|
|
C
|
I:ILE313
|
3.6
|
52.8
|
1.0
|
|
CG
|
I:ASP311
|
3.7
|
52.9
|
1.0
|
|
CA
|
I:ASP304
|
3.8
|
52.3
|
1.0
|
|
N
|
I:ASP311
|
4.0
|
50.8
|
1.0
|
|
OD2
|
I:ASP311
|
4.2
|
52.1
|
1.0
|
|
CB
|
I:ASP304
|
4.2
|
52.5
|
1.0
|
|
N
|
I:ILE313
|
4.2
|
49.3
|
1.0
|
|
OD2
|
I:ASP304
|
4.3
|
52.6
|
1.0
|
|
N
|
I:ALA305
|
4.4
|
54.5
|
1.0
|
|
CA
|
I:LEU309
|
4.4
|
57.5
|
1.0
|
|
N
|
I:ALA310
|
4.4
|
52.1
|
1.0
|
|
CA
|
I:ILE313
|
4.4
|
52.5
|
1.0
|
|
CA
|
I:ALA310
|
4.5
|
56.5
|
1.0
|
|
CB
|
I:ASP307
|
4.5
|
55.2
|
1.0
|
|
N
|
I:VAL314
|
4.5
|
46.9
|
1.0
|
|
CB
|
I:LEU309
|
4.5
|
53.2
|
1.0
|
|
CA
|
I:VAL314
|
4.6
|
49.0
|
1.0
|
|
N
|
I:LEU309
|
4.6
|
60.2
|
1.0
|
|
O
|
I:HOH958
|
4.6
|
52.1
|
1.0
|
|
N
|
I:ASP315
|
4.6
|
48.0
|
1.0
|
|
OD2
|
I:ASP315
|
4.7
|
52.9
|
1.0
|
|
CA
|
I:ALA305
|
4.7
|
57.2
|
1.0
|
|
C
|
I:ALA310
|
4.8
|
55.5
|
1.0
|
|
CB
|
I:ASP311
|
4.8
|
51.0
|
1.0
|
|
CB
|
I:ILE313
|
4.9
|
49.2
|
1.0
|
|
CA
|
I:ASP311
|
4.9
|
50.8
|
1.0
|
|
N
|
I:GLY312
|
4.9
|
51.1
|
1.0
|
|
Calcium binding site 10 out
of 10 in 6qz2
Go back to
Calcium Binding Sites List in 6qz2
Calcium binding site 10 out
of 10 in the Structure of Mhetase From Ideonella Sakaiensis
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 10 of Structure of Mhetase From Ideonella Sakaiensis within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
J:Ca801
b:44.1
occ:1.00
|
O
|
J:HOH968
|
2.2
|
41.0
|
1.0
|
|
O
|
J:ILE313
|
2.3
|
42.0
|
1.0
|
|
O
|
J:LEU309
|
2.3
|
46.9
|
1.0
|
|
OD1
|
J:ASP304
|
2.4
|
41.2
|
1.0
|
|
O
|
J:ASP304
|
2.4
|
41.9
|
1.0
|
|
OD2
|
J:ASP307
|
2.5
|
45.7
|
1.0
|
|
OD1
|
J:ASP307
|
2.6
|
46.0
|
1.0
|
|
OD1
|
J:ASP311
|
2.7
|
45.4
|
1.0
|
|
CG
|
J:ASP307
|
2.9
|
46.9
|
1.0
|
|
C
|
J:ASP304
|
3.4
|
45.6
|
1.0
|
|
C
|
J:ILE313
|
3.5
|
42.6
|
1.0
|
|
C
|
J:LEU309
|
3.5
|
46.9
|
1.0
|
|
CG
|
J:ASP304
|
3.6
|
45.0
|
1.0
|
|
CG
|
J:ASP311
|
3.8
|
43.5
|
1.0
|
|
CA
|
J:ASP304
|
3.9
|
44.7
|
1.0
|
|
N
|
J:ASP311
|
4.0
|
45.8
|
1.0
|
|
O
|
J:HOH943
|
4.2
|
44.8
|
1.0
|
|
N
|
J:ILE313
|
4.2
|
36.7
|
1.0
|
|
CB
|
J:ASP304
|
4.3
|
44.6
|
1.0
|
|
OD2
|
J:ASP311
|
4.3
|
43.7
|
1.0
|
|
CA
|
J:ILE313
|
4.4
|
40.5
|
1.0
|
|
CB
|
J:ASP307
|
4.4
|
42.6
|
1.0
|
|
CA
|
J:LEU309
|
4.4
|
46.2
|
1.0
|
|
N
|
J:VAL314
|
4.5
|
39.0
|
1.0
|
|
N
|
J:ALA310
|
4.5
|
46.1
|
1.0
|
|
OD2
|
J:ASP304
|
4.5
|
42.3
|
1.0
|
|
N
|
J:ALA305
|
4.5
|
45.0
|
1.0
|
|
N
|
J:LEU309
|
4.5
|
48.9
|
1.0
|
|
CA
|
J:ALA310
|
4.5
|
47.5
|
1.0
|
|
CA
|
J:VAL314
|
4.6
|
38.8
|
1.0
|
|
CB
|
J:LEU309
|
4.6
|
49.2
|
1.0
|
|
OD2
|
J:ASP315
|
4.6
|
47.0
|
1.0
|
|
N
|
J:ASP315
|
4.7
|
39.4
|
1.0
|
|
C
|
J:ALA310
|
4.8
|
49.7
|
1.0
|
|
CB
|
J:ILE313
|
4.8
|
39.8
|
1.0
|
|
CA
|
J:ALA305
|
4.8
|
46.9
|
1.0
|
|
CB
|
J:ASP311
|
4.9
|
44.2
|
1.0
|
|
CA
|
J:ASP311
|
4.9
|
45.3
|
1.0
|
|
N
|
J:GLY312
|
5.0
|
41.3
|
1.0
|
|
N
|
J:ASP307
|
5.0
|
45.4
|
1.0
|
|
Reference:
B.C.Knott,
E.Erickson,
M.D.Allen,
J.E.Gado,
R.Graham,
F.L.Kearns,
I.Pardo,
E.Topuzlu,
J.J.Anderson,
H.P.Austin,
G.Dominick,
C.W.Johnson,
N.A.Rorrer,
C.J.Szostkiewicz,
V.Copie,
C.M.Payne,
H.L.Woodcock,
B.S.Donohoe,
G.T.Beckham,
J.E.Mcgeehan.
Characterization and Engineering of A Two-Enzyme System For Plastics Depolymerization. Proc.Natl.Acad.Sci.Usa V. 117 25476 2020.
ISSN: ESSN 1091-6490
PubMed: 32989159
DOI: 10.1073/PNAS.2006753117
Page generated: Tue Jul 16 14:08:59 2024
|
