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Calcium in PDB 6rbc: X-Ray Structure of Human Glutamate Carboxypeptidase II (Gcpii) in Complex with A Inhibitor KB1157

Enzymatic activity of X-Ray Structure of Human Glutamate Carboxypeptidase II (Gcpii) in Complex with A Inhibitor KB1157

All present enzymatic activity of X-Ray Structure of Human Glutamate Carboxypeptidase II (Gcpii) in Complex with A Inhibitor KB1157:
3.4.17.21;

Protein crystallography data

The structure of X-Ray Structure of Human Glutamate Carboxypeptidase II (Gcpii) in Complex with A Inhibitor KB1157, PDB code: 6rbc was solved by C.Barinka, Z.Kutil, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 45.00 / 1.77
Space group I 2 2 2
Cell size a, b, c (Å), α, β, γ (°) 101.551, 130.470, 159.045, 90.00, 90.00, 90.00
R / Rfree (%) 16.4 / 19.1

Other elements in 6rbc:

The structure of X-Ray Structure of Human Glutamate Carboxypeptidase II (Gcpii) in Complex with A Inhibitor KB1157 also contains other interesting chemical elements:

Zinc (Zn) 2 atoms
Iodine (I) 1 atom
Chlorine (Cl) 1 atom

Calcium Binding Sites:

The binding sites of Calcium atom in the X-Ray Structure of Human Glutamate Carboxypeptidase II (Gcpii) in Complex with A Inhibitor KB1157 (pdb code 6rbc). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the X-Ray Structure of Human Glutamate Carboxypeptidase II (Gcpii) in Complex with A Inhibitor KB1157, PDB code: 6rbc:

Calcium binding site 1 out of 1 in 6rbc

Go back to Calcium Binding Sites List in 6rbc
Calcium binding site 1 out of 1 in the X-Ray Structure of Human Glutamate Carboxypeptidase II (Gcpii) in Complex with A Inhibitor KB1157


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of X-Ray Structure of Human Glutamate Carboxypeptidase II (Gcpii) in Complex with A Inhibitor KB1157 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca815

b:23.8
occ:1.00
 O A:TYR272 2.4 24.3 1.0
OE2 A:GLU436 2.4 25.2 1.0
O A:HOH1023 2.4 24.6 1.0
OE1 A:GLU433 2.4 26.6 1.0
O A:THR269 2.4 23.9 1.0
OE2 A:GLU433 2.4 24.3 1.0
OG1 A:THR269 2.5 22.7 1.0
CD A:GLU433 2.8 24.4 1.0
C A:THR269 3.3 23.6 1.0
CB A:THR269 3.3 23.9 1.0
CD A:GLU436 3.5 23.6 1.0
C A:TYR272 3.5 23.1 1.0
CA A:THR269 3.9 23.6 1.0
OE1 A:GLU436 3.9 23.7 1.0
N A:TYR272 4.0 23.5 1.0
CA A:PRO273 4.2 24.7 1.0
CB A:ASP266 4.2 23.3 1.0
N A:PRO270 4.2 22.6 1.0
N A:ALA274 4.3 23.4 1.0
N A:PRO273 4.3 23.7 1.0
CG A:GLU433 4.3 24.5 1.0
CA A:TYR272 4.4 23.9 1.0
C A:PRO273 4.4 25.4 1.0
N A:ASP266 4.4 21.2 1.0
CA A:PRO270 4.5 22.9 1.0
O A:ASP266 4.5 24.5 1.0
N A:GLY271 4.5 23.9 1.0
N A:THR269 4.6 23.8 1.0
O A:ALA264 4.6 24.8 1.0
CG2 A:THR269 4.7 24.2 1.0
CG A:GLU436 4.7 22.5 1.0
OD2 A:ASP266 4.7 26.2 1.0
C A:PRO270 4.8 24.5 1.0
CB A:ALA274 4.8 25.8 1.0
CA A:ASP266 4.9 24.3 1.0
CB A:GLU436 4.9 23.2 1.0
C A:GLY271 5.0 24.2 1.0

Reference:

C.Barinka, Z.Kutil. X-Ray Structure of Human Glutamate Carboxypeptidase II (Gcpii) in Complex with A Inhibitor KB1157 To Be Published.
Page generated: Tue Jul 16 14:19:24 2024

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