Calcium in PDB 6rvp: Saftsz-Gdp-Metpyr

The structure of Saftsz-Gdp-Metpyr, PDB code: 6rvp was solved by C.Fernandez-Tornero, J.M.Andreu, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	36.21 / 1.16
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	72.477, 50.079, 88.502, 90.00, 111.78, 90.00
R / Rfree (%)	19.1 / 20.8

The binding sites of Calcium atom in the Saftsz-Gdp-Metpyr (pdb code 6rvp). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Saftsz-Gdp-Metpyr, PDB code: 6rvp:

Calcium binding site 1 out of 1 in the Saftsz-Gdp-Metpyr


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Saftsz-Gdp-Metpyr within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca402 b:30.2 occ:0.50 O A:VAL203 2.3 31.9 1.0 O A:LEU200 2.4 32.0 1.0 O A:HOH688 2.5 27.6 1.0 O A:LEU209 2.6 20.6 1.0 OD1 A:ASN208 2.7 22.3 1.0 HA A:SER204 3.4 34.0 1.0 HD21 A:ASN208 3.5 33.2 1.0 C A:VAL203 3.5 28.6 1.0 CG A:ASN208 3.6 22.8 1.0 H A:GLY205 3.6 27.6 1.0 C A:LEU200 3.7 33.1 1.0 C A:LEU209 3.8 19.7 1.0 H A:LEU209 3.8 25.9 1.0 HA A:ASP210 3.8 21.2 1.0 ND2 A:ASN208 3.9 27.6 1.0 H A:VAL203 4.0 40.0 1.0 HA A:ILE201 4.0 36.0 1.0 HB3 A:ASP210 4.1 20.8 1.0 HG A:LEU200 4.1 44.9 1.0 CA A:SER204 4.2 28.3 1.0 N A:SER204 4.3 28.8 1.0 N A:GLY205 4.3 23.0 1.0 N A:LEU209 4.3 21.6 1.0 HA A:LEU200 4.3 36.7 1.0 O A:ILE201 4.3 29.8 1.0 N A:VAL203 4.4 33.3 1.0 C A:ILE201 4.5 27.7 1.0 CA A:ASP210 4.5 17.7 1.0 CA A:ILE201 4.5 29.9 1.0 CA A:VAL203 4.5 34.5 1.0 HA A:ASN208 4.6 24.8 1.0 N A:ILE201 4.6 27.6 1.0 CA A:LEU200 4.6 30.6 1.0 N A:ASP210 4.6 17.2 1.0 HD12 A:LEU200 4.7 46.0 1.0 CB A:ASP210 4.7 17.3 1.0 CA A:LEU209 4.7 19.8 1.0 HD22 A:ASN208 4.7 33.2 1.0 HB A:VAL203 4.7 48.2 1.0 C A:SER204 4.7 28.0 1.0 O A:HOH565 4.8 20.2 1.0 HB2 A:ASP210 4.8 20.8 1.0 HB2 A:LEU209 4.8 25.2 1.0 O A:HOH690 4.9 32.3 1.0 CB A:ASN208 4.9 20.8 1.0 CG A:LEU200 4.9 37.4 1.0 O A:HOH502 4.9 32.3 1.0

S.Huecas, A.J.Canosa-Valls, L.Araujo-Bazan, F.M.Ruiz, D.V.Laurents, C.Fernandez-Tornero, J.M.Andreu. Nucleotide-Induced Folding of Cell Division Protein Ftsz From Staphylococcus Aureus. Febs J. 2020.
ISSN: ISSN 1742-464X
PubMed: 31997533
DOI: 10.1111/FEBS.15235