Calcium in PDB 6ryg: Native Structure of Conglutinin Carbohydrate Recognition Domain

The structure of Native Structure of Conglutinin Carbohydrate Recognition Domain, PDB code: 6ryg was solved by A.K.Shrive, T.J.Greenhough, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	50.00 / 0.97
Space group	P 43
Cell size a, b, c (Å), α, β, γ (°)	50.170, 50.170, 52.247, 90.00, 90.00, 90.00
R / Rfree (%)	13.5 / 13.9

The binding sites of Calcium atom in the Native Structure of Conglutinin Carbohydrate Recognition Domain (pdb code 6ryg). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Native Structure of Conglutinin Carbohydrate Recognition Domain, PDB code: 6ryg:

Calcium binding site 1 out of 1 in the Native Structure of Conglutinin Carbohydrate Recognition Domain


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Native Structure of Conglutinin Carbohydrate Recognition Domain within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca400 b:16.9 occ:1.00 OD1 A:ASP338 2.3 15.7 1.0 OD1 A:ASN337 2.4 13.2 1.0 OE1 A:GLU325 2.4 18.8 1.0 OD1 A:ASN317 2.4 22.5 1.0 O A:HOH530 2.5 20.7 1.0 OE1 A:GLU315 2.5 18.3 1.0 O A:ASP338 2.6 12.6 1.0 CD A:GLU315 3.3 16.8 1.0 CG A:ASP338 3.4 15.7 1.0 CG A:ASN317 3.5 20.1 1.0 CD A:GLU325 3.5 18.1 1.0 CG A:ASN337 3.5 11.5 1.0 O A:HOH503 3.5 29.3 1.0 C A:ASP338 3.5 11.3 1.0 N A:ASP338 3.6 11.0 1.0 OE2 A:GLU315 3.7 18.5 1.0 OE2 A:GLU325 3.9 25.3 1.0 CA A:ASP338 3.9 11.1 1.0 ND2 A:ASN337 4.0 12.5 1.0 CB A:ASP338 4.2 13.2 1.0 ND2 A:ASN317 4.2 22.6 1.0 N A:ASN317 4.2 23.1 1.0 OD2 A:ASP338 4.3 17.7 1.0 CB A:ASN317 4.4 22.7 1.0 C A:ASN337 4.4 9.1 1.0 CG A:GLU315 4.6 15.6 1.0 CB A:ASN337 4.7 9.9 1.0 CG A:GLU325 4.7 17.4 1.0 N A:VAL339 4.7 10.4 1.0 CA A:ASN337 4.7 9.2 1.0 CB A:GLU325 4.8 15.7 1.0 CA A:ASN317 4.9 26.0 1.0

J.M.Paterson, A.J.Shaw, I.Burns, A.W.Dodds, A.Prasad, K.B.Reid, T.J.Greenhough, A.K.Shrive. Atomic-Resolution Crystal Structures of the Immune Protein Conglutinin From Cow Reveal Specific Interactions of Its Binding Site Withn-Acetylglucosamine. J.Biol.Chem. V. 294 17155 2019.
ISSN: ESSN 1083-351X
PubMed: 31562242
DOI: 10.1074/JBC.RA119.010271