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Calcium in PDB 6s20: Metabolism of Multiple Glycosaminoglycans By Bacteroides Thetaiotaomicron Is Orchestrated By A Versatile Core Genetic Locus (BT3336S-Sulf)

Protein crystallography data

The structure of Metabolism of Multiple Glycosaminoglycans By Bacteroides Thetaiotaomicron Is Orchestrated By A Versatile Core Genetic Locus (BT3336S-Sulf), PDB code: 6s20 was solved by D.Ndeh, A.Basle, H.Strahl, B.Henrissat, N.Terrapon, A.Cartmell, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 70.65 / 1.98
Space group P 41 21 2
Cell size a, b, c (Å), α, β, γ (°) 86.400, 86.400, 122.210, 90.00, 90.00, 90.00
R / Rfree (%) 18.1 / 22.4

Calcium Binding Sites:

The binding sites of Calcium atom in the Metabolism of Multiple Glycosaminoglycans By Bacteroides Thetaiotaomicron Is Orchestrated By A Versatile Core Genetic Locus (BT3336S-Sulf) (pdb code 6s20). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Metabolism of Multiple Glycosaminoglycans By Bacteroides Thetaiotaomicron Is Orchestrated By A Versatile Core Genetic Locus (BT3336S-Sulf), PDB code: 6s20:

Calcium binding site 1 out of 1 in 6s20

Go back to Calcium Binding Sites List in 6s20
Calcium binding site 1 out of 1 in the Metabolism of Multiple Glycosaminoglycans By Bacteroides Thetaiotaomicron Is Orchestrated By A Versatile Core Genetic Locus (BT3336S-Sulf)


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Metabolism of Multiple Glycosaminoglycans By Bacteroides Thetaiotaomicron Is Orchestrated By A Versatile Core Genetic Locus (BT3336S-Sulf) within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Ca603

b:41.6
occ:1.00
OD1 C:ASP44 2.3 24.1 1.0
OD1 C:ASP43 2.4 38.0 1.0
O2S C:NG6601 2.4 24.4 1.0
OD2 C:ASP332 2.4 25.0 1.0
OD1 C:ASN333 2.5 23.5 1.0
OD1 C:ASP332 2.7 22.3 1.0
CG C:ASP332 2.9 23.5 1.0
CG C:ASN333 3.2 20.8 1.0
ND2 C:ASN333 3.3 20.3 1.0
CG C:ASP44 3.4 25.8 1.0
CG C:ASP43 3.6 34.6 1.0
N C:ASP44 3.6 22.8 1.0
S C:NG6601 3.8 27.8 1.0
CB C:SER83 3.9 24.1 1.0
NZ C:LYS136 4.2 35.8 1.0
CA C:ASP44 4.2 24.1 1.0
OD2 C:ASP44 4.2 24.7 1.0
CE C:LYS362 4.2 21.3 1.0
C C:ASP43 4.3 24.2 1.0
CA C:SER83 4.3 22.3 1.0
CB C:ASP332 4.3 23.5 1.0
OD2 C:ASP43 4.3 37.2 1.0
NZ C:LYS362 4.3 23.4 1.0
CA C:ASP43 4.3 25.3 1.0
CB C:ASP44 4.4 23.9 1.0
CD2 C:HIS280 4.4 24.1 1.0
O1S C:NG6601 4.4 24.7 1.0
O3S C:NG6601 4.4 25.2 1.0
N C:SER83 4.5 19.9 1.0
CB C:ASP43 4.5 29.1 1.0
CB C:ASN333 4.6 20.1 1.0
OG C:SER83 4.6 26.0 1.0
N C:ASN333 4.7 20.5 1.0
O6 C:NG6601 4.8 27.0 1.0
NH2 C:ARG87 4.9 25.2 1.0
CD C:LYS362 5.0 21.9 1.0

Reference:

A.Catmell, A.Basle. The Metabolism of Multiple Glycosaminoglycans By the Human Gut Microbiota Is Orchestrated By A Versatile Core Genetic Locus (BT3336S-Sulf) To Be Published.
Page generated: Tue Jul 16 14:29:42 2024

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