Calcium in PDB 6s5p: Cfucosylated Peptide SBL2 Bound to Fucose Binding Lectin Lecb (Pa-Iil) From Pseudomonas Aeruginosa at 1.46 Angstrom Resolution

Protein crystallography data

The structure of Cfucosylated Peptide SBL2 Bound to Fucose Binding Lectin Lecb (Pa-Iil) From Pseudomonas Aeruginosa at 1.46 Angstrom Resolution, PDB code: 6s5p was solved by S.Baeriswyl, A.Stocker, J.-L.Reymond, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 46.37 / 1.46
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 123.099, 56.264, 70.498, 90.00, 90.00, 90.00
R / Rfree (%) 17.7 / 19.4

Calcium Binding Sites:

The binding sites of Calcium atom in the Cfucosylated Peptide SBL2 Bound to Fucose Binding Lectin Lecb (Pa-Iil) From Pseudomonas Aeruginosa at 1.46 Angstrom Resolution (pdb code 6s5p). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 8 binding sites of Calcium where determined in the Cfucosylated Peptide SBL2 Bound to Fucose Binding Lectin Lecb (Pa-Iil) From Pseudomonas Aeruginosa at 1.46 Angstrom Resolution, PDB code: 6s5p:
Jump to Calcium binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Calcium binding site 1 out of 8 in 6s5p

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Calcium binding site 1 out of 8 in the Cfucosylated Peptide SBL2 Bound to Fucose Binding Lectin Lecb (Pa-Iil) From Pseudomonas Aeruginosa at 1.46 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Cfucosylated Peptide SBL2 Bound to Fucose Binding Lectin Lecb (Pa-Iil) From Pseudomonas Aeruginosa at 1.46 Angstrom Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca301

b:17.5
occ:1.00
H2O A:ZDC303 2.0 21.6 1.0
H3O A:ZDC303 2.3 21.7 1.0
OD1 A:ASN103 2.3 15.9 1.0
OD1 A:ASP104 2.3 16.1 1.0
O A:ASN21 2.4 16.2 1.0
OD2 A:ASP101 2.4 16.4 1.0
O2 A:ZDC303 2.5 17.9 1.0
O B:GLY114 2.5 17.3 1.0
O3 A:ZDC303 2.6 18.1 1.0
OD1 A:ASP101 3.0 17.9 1.0
CG A:ASP101 3.1 16.5 1.0
H4 A:ZDC303 3.3 23.4 1.0
HD21 A:ASN103 3.4 21.4 1.0
CG A:ASN103 3.4 15.9 1.0
C2 A:ZDC303 3.4 19.8 1.0
C3 A:ZDC303 3.4 19.4 1.0
C B:GLY114 3.5 24.0 1.0
HA A:ASP104 3.5 19.8 1.0
C A:ASN21 3.6 17.1 1.0
CG A:ASP104 3.6 16.1 1.0
OXT B:GLY114 3.7 17.8 1.0
CA A:CA302 3.7 17.0 1.0
H2 A:ZDC303 3.7 23.8 1.0
HA A:SER22 3.7 19.8 1.0
ND2 A:ASN103 3.7 17.8 1.0
HB3 A:ASN21 3.7 19.1 1.0
HB2 A:SER22 3.8 19.7 1.0
C4 A:ZDC303 3.8 19.5 1.0
HB2 A:ASN21 3.8 19.1 1.0
H A:ASN103 4.2 19.0 1.0
CB A:ASN21 4.2 16.1 1.0
CA A:ASP104 4.2 16.4 1.0
N A:ASP104 4.2 15.7 1.0
H3 A:ZDC303 4.3 23.3 1.0
CA A:SER22 4.4 16.6 1.0
N A:SER22 4.4 16.5 1.0
OD2 A:ASP104 4.4 16.3 1.0
H4O A:ZDC303 4.4 23.1 1.0
CB A:ASP104 4.4 15.8 1.0
O4 A:ZDC303 4.5 19.2 1.0
H A:ASP104 4.5 18.8 1.0
OD2 A:ASP99 4.5 21.6 1.0
C A:ASN103 4.5 15.7 1.0
O A:HOH429 4.5 27.2 1.0
CB A:SER22 4.5 16.6 1.0
CB A:ASP101 4.5 17.9 1.0
CA A:ASN21 4.5 16.1 1.0
HD22 A:ASN103 4.6 21.4 1.0
HB2 A:ASP101 4.7 21.6 1.0
CB A:ASN103 4.7 15.8 1.0
HB3 A:ASP104 4.7 18.9 1.0
C1 A:ZDC303 4.7 19.9 1.0
CA B:GLY114 4.8 17.5 1.0
O A:ASN103 4.8 15.6 1.0
N A:ASN103 4.9 15.9 1.0
HB3 A:ASP101 4.9 21.6 1.0
CA A:ASN103 4.9 15.8 1.0
OD1 A:ASP99 5.0 18.5 1.0
O5 A:ZDC303 5.0 19.4 1.0

Calcium binding site 2 out of 8 in 6s5p

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Calcium binding site 2 out of 8 in the Cfucosylated Peptide SBL2 Bound to Fucose Binding Lectin Lecb (Pa-Iil) From Pseudomonas Aeruginosa at 1.46 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Cfucosylated Peptide SBL2 Bound to Fucose Binding Lectin Lecb (Pa-Iil) From Pseudomonas Aeruginosa at 1.46 Angstrom Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca302

b:17.0
occ:1.00
OD1 A:ASP99 2.3 18.5 1.0
OD1 A:ASP101 2.4 17.9 1.0
OD2 A:ASP104 2.4 16.3 1.0
H4O A:ZDC303 2.4 23.1 1.0
OE1 A:GLU95 2.5 18.4 1.0
O3 A:ZDC303 2.5 18.1 1.0
OE2 A:GLU95 2.5 17.0 1.0
O4 A:ZDC303 2.6 19.2 1.0
OD1 A:ASP104 2.7 16.1 1.0
CD A:GLU95 2.8 16.9 1.0
CG A:ASP104 2.9 16.1 1.0
H3O A:ZDC303 3.1 21.7 1.0
C4 A:ZDC303 3.3 19.5 1.0
H A:ASP101 3.3 20.2 1.0
CG A:ASP99 3.4 18.4 1.0
C3 A:ZDC303 3.4 19.4 1.0
H4 A:ZDC303 3.4 23.4 1.0
CG A:ASP101 3.4 16.5 1.0
OD2 A:ASP99 3.7 21.6 1.0
CA A:CA301 3.7 17.5 1.0
H A:TYR102 3.7 19.9 1.0
H3 A:ZDC303 3.8 23.3 1.0
H A:ASP96 3.8 22.4 1.0
HA A:GLU95 3.8 19.7 1.0
H A:ASN100 4.0 20.8 1.0
OD2 A:ASP101 4.0 16.4 1.0
H A:GLY97 4.0 23.5 1.0
N A:ASP101 4.1 16.9 1.0
O A:HOH461 4.1 22.6 1.0
H A:ASP99 4.2 21.8 1.0
OD1 A:ASP96 4.2 18.2 1.0
CG A:GLU95 4.3 17.0 1.0
CB A:ASP104 4.4 15.8 1.0
N A:ASN100 4.4 17.5 1.0
N A:TYR102 4.4 16.6 1.0
H A:ASN103 4.5 19.0 1.0
N A:ASP96 4.5 18.6 1.0
CB A:ASP101 4.6 17.9 1.0
N A:GLY97 4.6 19.6 1.0
H A:ASP104 4.6 18.8 1.0
HG3 A:GLU95 4.6 20.3 1.0
CA A:GLU95 4.7 16.5 1.0
OD1 A:ASN103 4.7 15.9 1.0
C2 A:ZDC303 4.7 19.8 1.0
CB A:ASP99 4.7 19.3 1.0
CA A:ASP101 4.7 16.7 1.0
HB2 A:ASP104 4.7 18.9 1.0
C5 A:ZDC303 4.8 20.1 1.0
O2 A:ZDC303 4.8 17.9 1.0
HG2 A:GLU95 4.8 20.3 1.0
HA3 A:GLY97 4.8 24.8 1.0
N A:ASP99 4.8 18.1 1.0
H2O A:ZDC303 4.8 21.6 1.0
HB3 A:ASP104 4.8 18.9 1.0
HA A:ASN100 4.8 20.9 1.0
CB A:GLU95 4.9 16.8 1.0
HB2 A:GLU95 4.9 20.0 1.0
HB3 A:ASP101 4.9 21.6 1.0
CG A:ASP96 4.9 19.7 1.0
C A:ASP99 5.0 18.7 1.0
HB2 A:SER22 5.0 19.7 1.0
C A:ASP101 5.0 16.5 1.0

Calcium binding site 3 out of 8 in 6s5p

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Calcium binding site 3 out of 8 in the Cfucosylated Peptide SBL2 Bound to Fucose Binding Lectin Lecb (Pa-Iil) From Pseudomonas Aeruginosa at 1.46 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Cfucosylated Peptide SBL2 Bound to Fucose Binding Lectin Lecb (Pa-Iil) From Pseudomonas Aeruginosa at 1.46 Angstrom Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca304

b:19.4
occ:1.00
O B:ASN21 2.3 19.2 1.0
O2 B:ZDC302 2.4 20.3 1.0
OD1 B:ASN103 2.4 17.9 1.0
OD2 B:ASP101 2.4 20.2 1.0
OD1 B:ASP104 2.4 19.2 1.0
O A:GLY114 2.5 18.3 1.0
O3 B:ZDC302 2.5 21.4 1.0
H3O B:ZDC302 2.5 25.7 1.0
H2O B:ZDC302 2.9 24.4 1.0
CG B:ASP101 3.1 22.1 1.0
OD1 B:ASP101 3.1 18.9 1.0
C2 B:ZDC302 3.3 20.7 1.0
H4 B:ZDC302 3.3 26.5 1.0
C3 B:ZDC302 3.3 20.8 1.0
HD21 B:ASN103 3.3 21.8 1.0
CG B:ASN103 3.4 17.7 1.0
C A:GLY114 3.4 22.9 1.0
HA B:ASP104 3.5 20.9 1.0
C B:ASN21 3.5 18.0 1.0
H2 B:ZDC302 3.6 24.8 1.0
OXT A:GLY114 3.6 24.3 1.0
CG B:ASP104 3.6 22.6 1.0
HB3 B:ASN21 3.7 23.4 1.0
CA B:CA301 3.7 20.4 1.0
ND2 B:ASN103 3.7 18.2 1.0
C4 B:ZDC302 3.8 22.0 1.0
HA B:SER22 3.8 21.8 1.0
HB2 B:SER22 3.9 22.9 1.0
HB2 B:ASN21 3.9 23.4 1.0
CB B:ASN21 4.2 19.4 1.0
H3 B:ZDC302 4.2 25.0 1.0
CA B:ASP104 4.2 17.4 1.0
H B:ASN103 4.2 20.8 1.0
N B:ASP104 4.2 18.8 1.0
CA B:SER22 4.4 18.2 1.0
N B:SER22 4.4 18.3 1.0
O4 B:ZDC302 4.4 23.6 1.0
H B:ASP104 4.4 22.6 1.0
OD2 B:ASP104 4.5 20.9 1.0
CB B:ASP104 4.5 17.6 1.0
CA B:ASN21 4.5 16.3 1.0
OD2 B:ASP99 4.5 22.4 1.0
C B:ASN103 4.5 16.9 1.0
CB B:ASP101 4.6 20.1 1.0
O B:HOH438 4.6 29.9 1.0
CB B:SER22 4.6 19.1 1.0
HD22 B:ASN103 4.6 21.8 1.0
C1 B:ZDC302 4.6 22.2 1.0
HB2 B:ASP101 4.7 24.2 1.0
CB B:ASN103 4.8 17.1 1.0
CA A:GLY114 4.8 21.1 1.0
HB3 B:ASP104 4.8 21.1 1.0
O B:ASN103 4.9 18.3 1.0
O5 B:ZDC302 4.9 22.1 1.0
N B:ASN103 5.0 17.3 1.0
HB3 B:ASP101 5.0 24.2 1.0

Calcium binding site 4 out of 8 in 6s5p

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Calcium binding site 4 out of 8 in the Cfucosylated Peptide SBL2 Bound to Fucose Binding Lectin Lecb (Pa-Iil) From Pseudomonas Aeruginosa at 1.46 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of Cfucosylated Peptide SBL2 Bound to Fucose Binding Lectin Lecb (Pa-Iil) From Pseudomonas Aeruginosa at 1.46 Angstrom Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca301

b:20.4
occ:1.00
OD1 B:ASP99 2.4 20.5 1.0
OD1 B:ASP101 2.4 18.9 1.0
OE2 B:GLU95 2.4 21.4 1.0
O3 B:ZDC302 2.4 21.4 1.0
OD2 B:ASP104 2.5 20.9 1.0
OE1 B:GLU95 2.5 20.9 1.0
O4 B:ZDC302 2.5 23.6 1.0
OD1 B:ASP104 2.6 19.2 1.0
CD B:GLU95 2.8 19.7 1.0
CG B:ASP104 2.9 22.6 1.0
H3O B:ZDC302 3.0 25.7 1.0
H4O B:ZDC302 3.1 28.4 1.0
C4 B:ZDC302 3.3 22.0 1.0
H B:ASP101 3.3 24.1 1.0
C3 B:ZDC302 3.3 20.8 1.0
CG B:ASP99 3.4 30.6 1.0
H4 B:ZDC302 3.4 26.5 1.0
CG B:ASP101 3.4 22.1 1.0
OD2 B:ASP99 3.7 22.4 1.0
H3 B:ZDC302 3.7 25.0 1.0
CA A:CA304 3.7 19.4 1.0
H B:ASP96 3.8 23.9 1.0
H B:TYR102 3.8 21.5 1.0
HA B:GLU95 3.9 21.7 1.0
OD2 B:ASP101 3.9 20.2 1.0
H B:ASN100 4.0 30.1 1.0
H B:GLY97 4.0 28.9 1.0
N B:ASP101 4.1 20.0 1.0
OD1 B:ASP96 4.2 25.5 1.0
O B:HOH455 4.2 26.3 1.0
H B:ASP99 4.2 32.5 1.0
CG B:GLU95 4.3 19.6 1.0
CB B:ASP104 4.4 17.6 1.0
N B:ASN100 4.4 25.1 1.0
N B:TYR102 4.5 18.0 1.0
N B:ASP96 4.5 19.9 1.0
H B:ASN103 4.5 20.8 1.0
H B:ASP104 4.6 22.6 1.0
N B:GLY97 4.6 24.1 1.0
CB B:ASP101 4.6 20.1 1.0
HG3 B:GLU95 4.6 23.5 1.0
C2 B:ZDC302 4.6 20.7 1.0
OD1 B:ASN103 4.7 17.9 1.0
CA B:GLU95 4.7 18.2 1.0
HA3 B:GLY97 4.7 29.6 1.0
C5 B:ZDC302 4.7 23.9 1.0
CA B:ASP101 4.7 19.9 1.0
CB B:ASP99 4.7 26.2 1.0
HB2 B:ASP104 4.8 21.1 1.0
O2 B:ZDC302 4.8 20.3 1.0
HG2 B:GLU95 4.8 23.5 1.0
N B:ASP99 4.8 27.1 1.0
HB3 B:ASP104 4.9 21.1 1.0
HA B:ASN100 4.9 29.6 1.0
HB3 B:ASP101 4.9 24.2 1.0
CB B:GLU95 4.9 18.6 1.0
CG B:ASP96 4.9 22.5 1.0
HB2 B:GLU95 5.0 22.2 1.0
C B:ASP99 5.0 21.6 1.0

Calcium binding site 5 out of 8 in 6s5p

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Calcium binding site 5 out of 8 in the Cfucosylated Peptide SBL2 Bound to Fucose Binding Lectin Lecb (Pa-Iil) From Pseudomonas Aeruginosa at 1.46 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 5 of Cfucosylated Peptide SBL2 Bound to Fucose Binding Lectin Lecb (Pa-Iil) From Pseudomonas Aeruginosa at 1.46 Angstrom Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Ca301

b:18.5
occ:1.00
OD1 C:ASP101 2.4 17.8 1.0
OD1 C:ASP99 2.4 20.1 1.0
OE2 C:GLU95 2.4 19.3 1.0
OD2 C:ASP104 2.4 17.6 1.0
OE1 C:GLU95 2.4 18.8 1.0
O3 C:ZDC303 2.4 19.9 1.0
O4 C:ZDC303 2.5 19.1 1.0
OD1 C:ASP104 2.7 16.8 1.0
CD C:GLU95 2.7 18.4 1.0
CG C:ASP104 2.9 19.0 1.0
H3O C:ZDC303 3.0 24.0 1.0
H4O C:ZDC303 3.1 23.0 1.0
H C:ASP101 3.3 23.3 1.0
C4 C:ZDC303 3.4 19.0 1.0
C3 C:ZDC303 3.4 18.6 1.0
CG C:ASP99 3.4 21.2 1.0
CG C:ASP101 3.4 20.6 1.0
H4 C:ZDC303 3.5 22.8 1.0
H3 C:ZDC303 3.7 22.3 1.0
OD2 C:ASP99 3.7 20.0 1.0
CA C:CA302 3.7 18.4 1.0
H C:TYR102 3.8 21.7 1.0
H C:ASP96 3.8 21.9 1.0
HA C:GLU95 3.9 25.9 1.0
H C:ASN100 3.9 22.5 1.0
OD2 C:ASP101 4.0 20.2 1.0
H C:GLY97 4.0 23.4 1.0
O C:HOH447 4.1 25.5 1.0
N C:ASP101 4.1 19.4 1.0
H C:ASP99 4.1 26.9 1.0
OD1 C:ASP96 4.2 19.1 1.0
CG C:GLU95 4.2 19.5 1.0
N C:ASN100 4.4 18.7 1.0
CB C:ASP104 4.4 16.0 1.0
N C:TYR102 4.4 18.1 1.0
H C:ASN103 4.5 22.1 1.0
N C:ASP96 4.5 18.2 1.0
CB C:ASP101 4.6 19.6 1.0
HG3 C:GLU95 4.6 23.4 1.0
N C:GLY97 4.6 19.5 1.0
H C:ASP104 4.6 18.0 1.0
OD1 C:ASN103 4.7 17.2 1.0
HA3 C:GLY97 4.7 25.1 1.0
CA C:GLU95 4.7 21.6 1.0
C2 C:ZDC303 4.7 19.9 1.0
HB2 C:ASP104 4.7 19.2 1.0
HG2 C:GLU95 4.7 23.4 1.0
CA C:ASP101 4.7 21.9 1.0
O2 C:ZDC303 4.7 19.8 1.0
CB C:ASP99 4.8 20.4 1.0
N C:ASP99 4.8 22.4 1.0
C5 C:ZDC303 4.8 21.1 1.0
H2O C:ZDC303 4.8 23.8 1.0
HA C:ASN100 4.9 22.1 1.0
HB3 C:ASP104 4.9 19.2 1.0
CB C:GLU95 4.9 20.4 1.0
HB3 C:ASP101 4.9 23.5 1.0
HB2 C:GLU95 4.9 24.5 1.0
C C:ASP99 5.0 25.2 1.0
CG C:ASP96 5.0 17.6 1.0
C C:ASP101 5.0 18.9 1.0

Calcium binding site 6 out of 8 in 6s5p

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Calcium binding site 6 out of 8 in the Cfucosylated Peptide SBL2 Bound to Fucose Binding Lectin Lecb (Pa-Iil) From Pseudomonas Aeruginosa at 1.46 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 6 of Cfucosylated Peptide SBL2 Bound to Fucose Binding Lectin Lecb (Pa-Iil) From Pseudomonas Aeruginosa at 1.46 Angstrom Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Ca302

b:18.4
occ:1.00
H2O C:ZDC303 2.0 23.8 1.0
OD1 C:ASN103 2.3 17.2 1.0
O C:ASN21 2.4 18.9 1.0
H3O C:ZDC303 2.4 24.0 1.0
OD2 C:ASP101 2.4 20.2 1.0
O D:GLY114 2.4 17.7 1.0
OD1 C:ASP104 2.4 16.8 1.0
O2 C:ZDC303 2.4 19.8 1.0
O3 C:ZDC303 2.5 19.9 1.0
OD1 C:ASP101 3.1 17.8 1.0
CG C:ASP101 3.1 20.6 1.0
HD21 C:ASN103 3.3 20.9 1.0
CG C:ASN103 3.3 16.1 1.0
C3 C:ZDC303 3.4 18.6 1.0
H4 C:ZDC303 3.4 22.8 1.0
C2 C:ZDC303 3.4 19.9 1.0
C D:GLY114 3.4 18.0 1.0
C C:ASN21 3.5 18.5 1.0
HA C:ASP104 3.5 19.1 1.0
HB3 C:ASN21 3.6 22.3 1.0
OXT D:GLY114 3.7 20.2 1.0
CG C:ASP104 3.7 19.0 1.0
H2 C:ZDC303 3.7 23.9 1.0
ND2 C:ASN103 3.7 17.4 1.0
CA C:CA301 3.7 18.5 1.0
HA C:SER22 3.8 22.4 1.0
C4 C:ZDC303 3.8 19.0 1.0
HB2 C:ASN21 3.8 22.3 1.0
HB2 C:SER22 3.9 25.2 1.0
CB C:ASN21 4.1 18.7 1.0
H C:ASN103 4.2 22.1 1.0
H3 C:ZDC303 4.2 22.3 1.0
CA C:ASP104 4.2 15.8 1.0
N C:ASP104 4.3 15.1 1.0
CA C:SER22 4.4 18.8 1.0
N C:SER22 4.4 18.4 1.0
O4 C:ZDC303 4.4 19.1 1.0
C C:ASN103 4.5 15.4 1.0
CA C:ASN21 4.5 18.3 1.0
OD2 C:ASP104 4.5 17.6 1.0
H C:ASP104 4.5 18.0 1.0
CB C:ASP104 4.5 16.0 1.0
CB C:ASP101 4.5 19.6 1.0
HD22 C:ASN103 4.5 20.9 1.0
OD2 C:ASP99 4.6 20.0 1.0
CB C:SER22 4.6 21.0 1.0
O C:HOH466 4.7 35.5 1.0
CB C:ASN103 4.7 16.0 1.0
HB2 C:ASP101 4.7 23.5 1.0
C1 C:ZDC303 4.7 20.5 1.0
O C:ASN103 4.8 15.1 1.0
CA D:GLY114 4.8 19.6 1.0
HB3 C:ASP104 4.9 19.2 1.0
N C:ASN103 4.9 18.4 1.0
HB3 C:ASP101 4.9 23.5 1.0
CA C:ASN103 4.9 16.6 1.0
O5 C:ZDC303 5.0 20.1 1.0

Calcium binding site 7 out of 8 in 6s5p

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Calcium binding site 7 out of 8 in the Cfucosylated Peptide SBL2 Bound to Fucose Binding Lectin Lecb (Pa-Iil) From Pseudomonas Aeruginosa at 1.46 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 7 of Cfucosylated Peptide SBL2 Bound to Fucose Binding Lectin Lecb (Pa-Iil) From Pseudomonas Aeruginosa at 1.46 Angstrom Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Ca304

b:17.1
occ:1.00
O D:ASN21 2.3 19.0 1.0
H3O C:ZDC305 2.3 23.2 1.0
OD1 D:ASP104 2.3 15.8 1.0
OD1 D:ASN103 2.4 17.0 1.0
O2 C:ZDC305 2.4 18.7 1.0
OD2 D:ASP101 2.4 17.7 1.0
O C:GLY114 2.5 17.3 1.0
O3 C:ZDC305 2.5 19.4 1.0
H2O C:ZDC305 2.8 22.5 1.0
CG D:ASP101 3.1 16.6 1.0
OD1 D:ASP101 3.1 15.2 1.0
H4 C:ZDC305 3.2 22.1 1.0
HD21 D:ASN103 3.3 18.7 1.0
C3 C:ZDC305 3.3 16.6 1.0
C2 C:ZDC305 3.4 17.4 1.0
CG D:ASN103 3.4 15.1 1.0
C C:GLY114 3.5 18.4 1.0
C D:ASN21 3.5 17.4 1.0
HA D:ASP104 3.5 20.0 1.0
CG D:ASP104 3.6 18.2 1.0
HB3 D:ASN21 3.7 24.0 1.0
H2 C:ZDC305 3.7 20.9 1.0
OXT C:GLY114 3.7 20.8 1.0
C4 C:ZDC305 3.7 18.4 1.0
ND2 D:ASN103 3.7 15.5 1.0
CA D:CA201 3.8 18.5 1.0
HA D:SER22 3.8 21.6 1.0
HB2 D:ASN21 3.8 24.0 1.0
HB2 D:SER22 4.0 21.1 1.0
CB D:ASN21 4.1 20.0 1.0
H3 C:ZDC305 4.2 19.9 1.0
CA D:ASP104 4.2 16.6 1.0
H D:ASN103 4.2 19.9 1.0
H4O C:ZDC305 4.3 23.4 1.0
N D:ASP104 4.3 16.6 1.0
O4 C:ZDC305 4.3 19.5 1.0
N D:SER22 4.4 17.6 1.0
CA D:SER22 4.4 18.0 1.0
OD2 D:ASP104 4.4 16.3 1.0
CB D:ASP104 4.4 17.5 1.0
CA D:ASN21 4.5 17.2 1.0
OD2 D:ASP99 4.5 18.1 1.0
C D:ASN103 4.5 15.1 1.0
H D:ASP104 4.5 20.0 1.0
CB D:ASP101 4.6 17.8 1.0
HD22 D:ASN103 4.6 18.7 1.0
CB D:SER22 4.7 17.7 1.0
HB3 D:ASP104 4.7 21.1 1.0
C1 C:ZDC305 4.7 19.4 1.0
HB2 D:ASP101 4.7 21.3 1.0
CB D:ASN103 4.8 16.1 1.0
CA C:GLY114 4.8 19.1 1.0
O D:ASN103 4.9 15.9 1.0
O5 C:ZDC305 4.9 17.9 1.0
N D:ASN103 5.0 16.6 1.0
HB3 D:ASP101 5.0 21.3 1.0

Calcium binding site 8 out of 8 in 6s5p

Go back to Calcium Binding Sites List in 6s5p
Calcium binding site 8 out of 8 in the Cfucosylated Peptide SBL2 Bound to Fucose Binding Lectin Lecb (Pa-Iil) From Pseudomonas Aeruginosa at 1.46 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 8 of Cfucosylated Peptide SBL2 Bound to Fucose Binding Lectin Lecb (Pa-Iil) From Pseudomonas Aeruginosa at 1.46 Angstrom Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Ca201

b:18.5
occ:1.00
H4O C:ZDC305 2.3 23.4 1.0
OD1 D:ASP99 2.3 17.4 1.0
OE2 D:GLU95 2.4 16.8 1.0
OD1 D:ASP101 2.4 15.2 1.0
OD2 D:ASP104 2.4 16.3 1.0
OE1 D:GLU95 2.4 16.6 1.0
O3 C:ZDC305 2.5 19.4 1.0
O4 C:ZDC305 2.5 19.5 1.0
OD1 D:ASP104 2.7 15.8 1.0
CD D:GLU95 2.7 15.3 1.0
CG D:ASP104 2.9 18.2 1.0
H3O C:ZDC305 3.1 23.2 1.0
CG D:ASP99 3.3 19.9 1.0
C4 C:ZDC305 3.3 18.4 1.0
C3 C:ZDC305 3.4 16.6 1.0
H D:ASP101 3.4 19.8 1.0
CG D:ASP101 3.5 16.6 1.0
H4 C:ZDC305 3.5 22.1 1.0
OD2 D:ASP99 3.6 18.1 1.0
H3 C:ZDC305 3.7 19.9 1.0
CA C:CA304 3.8 17.1 1.0
H D:ASP96 3.8 19.8 1.0
H D:GLY97 3.8 20.9 1.0
HA D:GLU95 3.9 19.9 1.0
H D:ASP99 3.9 22.5 1.0
H D:TYR102 3.9 19.6 1.0
OD1 D:ASP96 4.0 19.8 1.0
OD2 D:ASP101 4.0 17.7 1.0
H D:ASN100 4.1 19.8 1.0
N D:ASP101 4.2 16.4 1.0
CG D:GLU95 4.2 17.2 1.0
CB D:ASP104 4.4 17.5 1.0
N D:GLY97 4.4 17.4 1.0
HA3 D:GLY97 4.5 23.0 1.0
N D:ASP96 4.5 16.4 1.0
N D:ASN100 4.5 16.5 1.0
N D:TYR102 4.5 16.4 1.0
H D:ASN103 4.5 19.9 1.0
HG3 D:GLU95 4.6 20.7 1.0
CB D:ASP101 4.6 17.8 1.0
N D:ASP99 4.6 18.8 1.0
CA D:GLU95 4.7 16.6 1.0
CB D:ASP99 4.7 19.5 1.0
OD1 D:ASN103 4.7 17.0 1.0
C2 C:ZDC305 4.7 17.4 1.0
H D:ASP104 4.7 20.0 1.0
HG2 D:GLU95 4.7 20.7 1.0
HB2 D:ASP104 4.8 21.1 1.0
O2 C:ZDC305 4.8 18.7 1.0
CA D:ASP101 4.8 15.0 1.0
C5 C:ZDC305 4.8 19.0 1.0
HB3 D:ASP104 4.8 21.1 1.0
H D:THR98 4.8 22.6 1.0
CA D:GLY97 4.9 19.1 1.0
CB D:GLU95 4.9 18.0 1.0
HB3 D:ASP101 4.9 21.3 1.0
C D:ASP99 4.9 19.8 1.0
CA D:ASP99 5.0 20.0 1.0
HA D:ASN100 5.0 18.1 1.0
HB2 D:GLU95 5.0 21.6 1.0
CG D:ASP96 5.0 20.3 1.0

Reference:

S.Baeriswyl, B.H.Gan, T.N.Siriwardena, R.Visini, M.Robadey, S.Javor, A.Stocker, T.Darbre, J.L.Reymond. X-Ray Crystal Structures of Short Antimicrobial Peptides As Pseudomonas Aeruginosa Lectin B Complexes. Acs Chem.Biol. V. 14 758 2019.
ISSN: ESSN 1554-8937
PubMed: 30830745
DOI: 10.1021/ACSCHEMBIO.9B00047
Page generated: Sat Dec 12 07:32:20 2020

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