Atomistry » Calcium » PDB 6ry5-6sau » 6s6c
Atomistry »
  Calcium »
    PDB 6ry5-6sau »
      6s6c »

Calcium in PDB 6s6c: Ground State Structure of Archaerhodopsin-3 at 100K

Protein crystallography data

The structure of Ground State Structure of Archaerhodopsin-3 at 100K, PDB code: 6s6c was solved by I.Moraes, P.J.Judge, D.Axford, T.O.C.Kwan, J.F.Bada Juarez, J.Vinals, A.Watts, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 52.10 / 1.07
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 44.669, 47.357, 104.193, 90.00, 90.00, 90.00
R / Rfree (%) 15.8 / 17

Other elements in 6s6c:

The structure of Ground State Structure of Archaerhodopsin-3 at 100K also contains other interesting chemical elements:

Chlorine (Cl) 3 atoms
Sodium (Na) 1 atom

Calcium Binding Sites:

The binding sites of Calcium atom in the Ground State Structure of Archaerhodopsin-3 at 100K (pdb code 6s6c). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Ground State Structure of Archaerhodopsin-3 at 100K, PDB code: 6s6c:

Calcium binding site 1 out of 1 in 6s6c

Go back to Calcium Binding Sites List in 6s6c
Calcium binding site 1 out of 1 in the Ground State Structure of Archaerhodopsin-3 at 100K


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Ground State Structure of Archaerhodopsin-3 at 100K within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca713

b:11.5
occ:0.90
O A:LEU240 2.3 12.7 1.0
OD2 A:ASP48 2.4 13.4 1.0
O A:HOH586 2.4 14.9 1.0
O A:HOH589 2.4 13.5 1.0
OD1 A:ASP46 2.4 14.2 1.0
OD2 A:ASP46 2.7 13.6 1.0
CG A:ASP46 2.9 13.9 1.0
HB2 A:ASP48 3.3 12.9 1.0
C A:LEU240 3.5 12.0 1.0
H A:ASP48 3.5 13.8 1.0
CG A:ASP48 3.5 12.3 0.9
HA A:LEU240 3.8 12.2 1.0
CB A:ASP48 3.9 12.9 1.0
HB3 A:LEU240 4.0 13.1 1.0
CA A:LEU240 4.1 12.1 1.0
O A:HOH594 4.2 22.7 1.0
HA A:ASP242 4.4 14.6 1.0
N A:ASP48 4.4 13.8 1.0
CB A:ASP46 4.4 13.6 1.0
C A:GLY241 4.4 13.7 1.0
H A:LYS47 4.5 15.0 1.0
N A:GLY241 4.5 12.8 1.0
HA2 A:GLY241 4.6 13.4 1.0
OD1 A:ASP48 4.6 11.6 0.8
O A:GLY241 4.6 13.7 1.0
H A:ALA49 4.6 12.2 1.0
HB3 A:ASP48 4.6 13.0 1.0
CB A:LEU240 4.7 13.1 1.0
N A:ASP242 4.7 14.3 1.0
CA A:GLY241 4.7 13.3 1.0
HB2 A:ASP46 4.8 13.7 1.0
CA A:ASP48 4.8 13.0 1.0
HD21 A:LEU240 4.8 14.8 1.0
O A:HOH629 4.9 19.1 1.0
HB3 A:ASP46 4.9 13.7 1.0
N A:LYS47 4.9 14.9 1.0
H A:ASP242 5.0 14.0 1.0

Reference:

J.F.Bada Juarez, P.J.Judge, J.Vinals, D.Axford, J.Birch, P.Aller, A.Butryn, R.L.Owen, D.A.Sherrell, J.H.Beale, T.O.C.Kwan, R.Reis, A.M.Orville, A.Watts, I.Moraes. Structure of the Archaerhodopsin-3 at 100K To Be Published.
Page generated: Tue Jul 16 14:33:40 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy