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Calcium in PDB 6s7g: Cfucosylated Linker Peptide SBL1 Bound to Fucose Binding Lectin Lecb (Pa-Iil) From Pseudomonas Aeruginosa at 1.84 Angstrom Resolution

Protein crystallography data

The structure of Cfucosylated Linker Peptide SBL1 Bound to Fucose Binding Lectin Lecb (Pa-Iil) From Pseudomonas Aeruginosa at 1.84 Angstrom Resolution, PDB code: 6s7g was solved by S.Baeriswyl, A.Stocker, J.-L.Reymond, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 46.43 / 1.84
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 123.230, 56.742, 70.622, 90.00, 90.00, 90.00
R / Rfree (%) 18.8 / 21.1

Calcium Binding Sites:

The binding sites of Calcium atom in the Cfucosylated Linker Peptide SBL1 Bound to Fucose Binding Lectin Lecb (Pa-Iil) From Pseudomonas Aeruginosa at 1.84 Angstrom Resolution (pdb code 6s7g). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 8 binding sites of Calcium where determined in the Cfucosylated Linker Peptide SBL1 Bound to Fucose Binding Lectin Lecb (Pa-Iil) From Pseudomonas Aeruginosa at 1.84 Angstrom Resolution, PDB code: 6s7g:
Jump to Calcium binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Calcium binding site 1 out of 8 in 6s7g

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Calcium binding site 1 out of 8 in the Cfucosylated Linker Peptide SBL1 Bound to Fucose Binding Lectin Lecb (Pa-Iil) From Pseudomonas Aeruginosa at 1.84 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Cfucosylated Linker Peptide SBL1 Bound to Fucose Binding Lectin Lecb (Pa-Iil) From Pseudomonas Aeruginosa at 1.84 Angstrom Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca301

b:20.2
occ:1.00
OD1 A:ASP101 2.4 19.9 1.0
O3 E:ZDC101 2.4 20.7 1.0
OD1 A:ASP99 2.4 25.4 1.0
O4 E:ZDC101 2.5 23.9 1.0
OE1 A:GLU95 2.5 23.6 1.0
OD2 A:ASP104 2.5 17.2 1.0
OD1 A:ASP104 2.6 20.4 1.0
OE2 A:GLU95 2.6 21.8 1.0
H4O E:ZDC101 2.7 28.7 1.0
H3O E:ZDC101 2.7 24.9 1.0
CD A:GLU95 2.8 21.2 1.0
CG A:ASP104 2.9 18.7 1.0
C4 E:ZDC101 3.2 22.7 1.0
C3 E:ZDC101 3.3 21.0 1.0
H4 E:ZDC101 3.3 27.2 1.0
H A:ASP101 3.4 23.3 1.0
CG A:ASP99 3.4 36.2 1.0
CG A:ASP101 3.4 28.7 1.0
H3 E:ZDC101 3.6 25.2 1.0
OD2 A:ASP99 3.6 20.3 1.0
CA A:CA302 3.6 19.0 1.0
H A:TYR102 3.7 25.5 1.0
H A:ASP96 3.8 24.9 1.0
H A:GLY97 3.9 28.1 1.0
OD2 A:ASP101 3.9 19.1 1.0
HA A:GLU95 3.9 21.4 1.0
H A:ASN100 3.9 37.5 1.0
OD1 A:ASP96 4.0 27.4 1.0
N A:ASP101 4.2 19.5 1.0
O A:HOH433 4.2 22.8 1.0
H A:ASP99 4.2 27.2 1.0
CG A:GLU95 4.3 20.7 1.0
H2O E:ZDC101 4.3 24.4 1.0
N A:TYR102 4.4 21.2 1.0
CB A:ASP104 4.4 17.2 1.0
N A:ASN100 4.4 31.2 1.0
H A:ASP104 4.5 20.7 1.0
N A:ASP96 4.5 20.8 1.0
H A:ASN103 4.5 21.5 1.0
N A:GLY97 4.5 23.4 1.0
CB A:ASP101 4.6 19.2 1.0
C2 E:ZDC101 4.6 20.9 1.0
HA3 A:GLY97 4.6 25.3 1.0
OD1 A:ASN103 4.7 18.2 1.0
C5 E:ZDC101 4.7 24.3 1.0
CA A:GLU95 4.7 17.9 1.0
O2 E:ZDC101 4.7 20.4 1.0
HG3 A:GLU95 4.7 24.8 1.0
CB A:ASP99 4.8 26.8 1.0
HB2 A:ASP104 4.8 20.6 1.0
CA A:ASP101 4.8 18.8 1.0
HA A:ASN100 4.8 42.9 1.0
HG2 A:GLU95 4.8 24.8 1.0
HB3 A:ASP104 4.9 20.6 1.0
HB3 A:ASP101 4.9 23.0 1.0
N A:ASP99 4.9 22.6 1.0
HB2 A:GLU95 4.9 22.9 1.0
CB A:GLU95 4.9 19.1 1.0
CG A:ASP96 4.9 23.0 1.0
N A:ASP104 5.0 17.2 1.0
HB2 A:SER22 5.0 20.6 1.0
HA A:TYR102 5.0 25.1 1.0

Calcium binding site 2 out of 8 in 6s7g

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Calcium binding site 2 out of 8 in the Cfucosylated Linker Peptide SBL1 Bound to Fucose Binding Lectin Lecb (Pa-Iil) From Pseudomonas Aeruginosa at 1.84 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Cfucosylated Linker Peptide SBL1 Bound to Fucose Binding Lectin Lecb (Pa-Iil) From Pseudomonas Aeruginosa at 1.84 Angstrom Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca302

b:19.0
occ:1.00
H2O E:ZDC101 2.2 24.4 1.0
OD1 A:ASN103 2.3 18.2 1.0
OD2 A:ASP101 2.3 19.1 1.0
O3 E:ZDC101 2.4 20.7 1.0
O A:ASN21 2.4 19.7 1.0
O2 E:ZDC101 2.4 20.4 1.0
OD1 A:ASP104 2.4 20.4 1.0
O C:GLY114 2.5 16.5 1.0
H3O E:ZDC101 2.7 24.9 1.0
CG A:ASP101 3.1 28.7 1.0
OD1 A:ASP101 3.2 19.9 1.0
H4 E:ZDC101 3.3 27.2 1.0
C3 E:ZDC101 3.3 21.0 1.0
CG A:ASN103 3.4 19.4 1.0
C2 E:ZDC101 3.4 20.9 1.0
HD21 A:ASN103 3.4 22.3 1.0
C C:GLY114 3.4 17.6 1.0
HA A:ASP104 3.5 21.4 1.0
OXT C:GLY114 3.5 25.6 1.0
C A:ASN21 3.6 24.3 1.0
CA A:CA301 3.6 20.2 1.0
CG A:ASP104 3.6 18.7 1.0
H2 E:ZDC101 3.7 25.0 1.0
HB3 A:ASN21 3.7 18.3 1.0
HB2 A:SER22 3.8 20.6 1.0
ND2 A:ASN103 3.8 18.5 1.0
C4 E:ZDC101 3.8 22.7 1.0
HA A:SER22 3.8 20.9 1.0
HB2 A:ASN21 4.0 18.3 1.0
N A:ASP104 4.1 17.2 1.0
H A:ASN103 4.2 21.5 1.0
CA A:ASP104 4.2 17.9 1.0
H3 E:ZDC101 4.2 25.2 1.0
H A:ASP104 4.2 20.7 1.0
CB A:ASN21 4.3 15.3 1.0
CA A:SER22 4.4 17.4 1.0
N A:SER22 4.4 18.6 1.0
O4 E:ZDC101 4.4 23.9 1.0
OD2 A:ASP99 4.4 20.3 1.0
CB A:ASP104 4.5 17.2 1.0
C A:ASN103 4.5 22.7 1.0
OD2 A:ASP104 4.5 17.2 1.0
CB A:SER22 4.5 17.2 1.0
CB A:ASP101 4.5 19.2 1.0
CA A:ASN21 4.6 19.2 1.0
O A:HOH441 4.6 33.8 1.0
HD22 A:ASN103 4.6 22.3 1.0
C1 E:ZDC101 4.7 22.3 1.0
HB2 A:ASP101 4.7 23.0 1.0
CB A:ASN103 4.7 15.5 1.0
HB3 A:ASP104 4.8 20.6 1.0
CA C:GLY114 4.8 23.1 1.0
N A:ASN103 4.9 17.9 1.0
H1M2 E:ZDC101 4.9 27.0 1.0
H4O E:ZDC101 4.9 28.7 1.0
HB3 A:ASP101 4.9 23.0 1.0
O5 E:ZDC101 4.9 23.1 1.0
CA A:ASN103 4.9 21.0 1.0
O A:ASN103 5.0 20.4 1.0

Calcium binding site 3 out of 8 in 6s7g

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Calcium binding site 3 out of 8 in the Cfucosylated Linker Peptide SBL1 Bound to Fucose Binding Lectin Lecb (Pa-Iil) From Pseudomonas Aeruginosa at 1.84 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Cfucosylated Linker Peptide SBL1 Bound to Fucose Binding Lectin Lecb (Pa-Iil) From Pseudomonas Aeruginosa at 1.84 Angstrom Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca303

b:16.1
occ:1.00
H3O G:ZDC101 2.0 19.4 1.0
OD1 C:ASN103 2.3 17.9 1.0
OD1 C:ASP104 2.3 15.2 1.0
O C:ASN21 2.4 14.1 1.0
O2 G:ZDC101 2.4 20.1 1.0
OD2 C:ASP101 2.4 18.0 1.0
O3 G:ZDC101 2.4 16.1 1.0
O A:GLY114 2.6 16.0 1.0
H2O G:ZDC101 2.9 24.2 1.0
CG C:ASP101 3.2 15.5 1.0
OD1 C:ASP101 3.2 17.4 1.0
H4 G:ZDC101 3.2 20.3 1.0
C3 G:ZDC101 3.3 16.4 1.0
C2 G:ZDC101 3.3 18.1 1.0
CG C:ASN103 3.4 17.8 1.0
HD21 C:ASN103 3.4 22.9 1.0
HA C:ASP104 3.5 23.1 1.0
C A:GLY114 3.5 18.9 1.0
CG C:ASP104 3.6 16.8 1.0
OXT A:GLY114 3.6 18.1 1.0
C C:ASN21 3.6 14.0 1.0
H2 G:ZDC101 3.6 21.7 1.0
CA C:CA301 3.7 16.7 1.0
HB3 C:ASN21 3.7 16.4 1.0
C4 G:ZDC101 3.7 16.9 1.0
HB2 C:SER22 3.7 17.3 1.0
ND2 C:ASN103 3.8 19.1 1.0
HA C:SER22 3.8 20.5 1.0
HB2 C:ASN21 3.9 16.4 1.0
N C:ASP104 4.1 13.6 1.0
CA C:ASP104 4.1 19.2 1.0
H C:ASN103 4.1 18.1 1.0
H3 G:ZDC101 4.2 19.6 1.0
CB C:ASN21 4.2 13.7 1.0
H C:ASP104 4.2 16.4 1.0
O4 G:ZDC101 4.4 18.3 1.0
OD2 C:ASP104 4.4 16.4 1.0
CB C:ASP104 4.4 14.0 1.0
CA C:SER22 4.4 17.1 1.0
OD2 C:ASP99 4.4 16.3 1.0
C C:ASN103 4.5 14.3 1.0
N C:SER22 4.5 14.9 1.0
O A:HOH436 4.5 19.9 1.0
CB C:SER22 4.5 14.5 1.0
CA C:ASN21 4.6 13.7 1.0
CB C:ASP101 4.6 14.8 1.0
H4O G:ZDC101 4.7 22.0 1.0
HD22 C:ASN103 4.7 22.9 1.0
C1 G:ZDC101 4.7 18.6 1.0
CB C:ASN103 4.7 14.2 1.0
HB2 C:ASP101 4.7 17.7 1.0
HB3 C:ASP104 4.7 16.7 1.0
O A:HOH496 4.8 38.0 1.0
N C:ASN103 4.9 15.1 1.0
CA A:GLY114 4.9 20.2 1.0
O C:ASN103 4.9 15.7 1.0
CA C:ASN103 4.9 14.0 1.0
O5 G:ZDC101 5.0 19.0 1.0
H1M1 G:ZDC101 5.0 22.4 1.0
HB3 C:ASP101 5.0 17.7 1.0

Calcium binding site 4 out of 8 in 6s7g

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Calcium binding site 4 out of 8 in the Cfucosylated Linker Peptide SBL1 Bound to Fucose Binding Lectin Lecb (Pa-Iil) From Pseudomonas Aeruginosa at 1.84 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of Cfucosylated Linker Peptide SBL1 Bound to Fucose Binding Lectin Lecb (Pa-Iil) From Pseudomonas Aeruginosa at 1.84 Angstrom Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca301

b:18.1
occ:1.00
H3O F:ZDC101 2.3 24.3 1.0
OD1 B:ASP101 2.3 16.8 1.0
OD1 B:ASP99 2.4 23.1 1.0
OE1 B:GLU95 2.4 22.4 1.0
OE2 B:GLU95 2.4 20.8 1.0
OD2 B:ASP104 2.4 14.1 1.0
O4 F:ZDC101 2.5 23.0 1.0
O3 F:ZDC101 2.5 20.2 1.0
OD1 B:ASP104 2.6 17.4 1.0
CD B:GLU95 2.7 18.4 1.0
H4O F:ZDC101 2.8 27.6 1.0
CG B:ASP104 2.9 17.7 1.0
C4 F:ZDC101 3.3 23.0 1.0
CG B:ASP99 3.3 18.3 1.0
CG B:ASP101 3.3 20.9 1.0
H4 F:ZDC101 3.3 27.6 1.0
H B:ASP101 3.4 27.6 1.0
C3 F:ZDC101 3.4 20.9 1.0
OD2 B:ASP99 3.5 22.0 1.0
H B:TYR102 3.7 23.3 1.0
H B:ASP96 3.7 21.7 1.0
CA B:CA302 3.7 16.5 1.0
H3 F:ZDC101 3.7 25.1 1.0
OD2 B:ASP101 3.8 17.3 1.0
HA B:GLU95 3.8 19.3 1.0
H B:GLY97 3.9 32.7 1.0
H B:ASN100 4.0 22.1 1.0
O B:HOH448 4.1 24.9 1.0
OD1 B:ASP96 4.1 18.7 1.0
N B:ASP101 4.1 23.0 1.0
H B:ASP99 4.1 22.4 1.0
CG B:GLU95 4.2 19.3 1.0
N B:TYR102 4.4 19.4 1.0
CB B:ASP104 4.4 12.9 1.0
N B:ASN100 4.5 18.4 1.0
H B:ASP104 4.5 20.4 1.0
H B:ASN103 4.5 24.6 1.0
N B:ASP96 4.5 18.1 1.0
N B:GLY97 4.5 27.2 1.0
CB B:ASP101 4.5 20.6 1.0
HG3 B:GLU95 4.6 23.2 1.0
CA B:GLU95 4.6 16.1 1.0
HA3 B:GLY97 4.7 23.8 1.0
OD1 B:ASN103 4.7 13.4 1.0
C2 F:ZDC101 4.7 20.8 1.0
C5 F:ZDC101 4.7 23.9 1.0
CB B:ASP99 4.7 19.2 1.0
HB2 B:ASP104 4.7 15.5 1.0
HG2 B:GLU95 4.7 23.2 1.0
O2 F:ZDC101 4.7 21.2 1.0
CA B:ASP101 4.8 16.2 1.0
N B:ASP99 4.8 18.7 1.0
HB3 B:ASP104 4.8 15.5 1.0
CB B:GLU95 4.8 19.4 1.0
HB2 B:GLU95 4.8 23.2 1.0
HB3 B:ASP101 4.8 24.7 1.0
CG B:ASP96 4.9 17.6 1.0
HA B:ASN100 4.9 22.4 1.0
HA B:TYR102 4.9 21.0 1.0
N B:ASP104 5.0 17.0 1.0
C B:ASP101 5.0 18.3 1.0
C B:ASP99 5.0 38.1 1.0

Calcium binding site 5 out of 8 in 6s7g

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Calcium binding site 5 out of 8 in the Cfucosylated Linker Peptide SBL1 Bound to Fucose Binding Lectin Lecb (Pa-Iil) From Pseudomonas Aeruginosa at 1.84 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 5 of Cfucosylated Linker Peptide SBL1 Bound to Fucose Binding Lectin Lecb (Pa-Iil) From Pseudomonas Aeruginosa at 1.84 Angstrom Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca302

b:16.5
occ:1.00
H3O F:ZDC101 1.9 24.3 1.0
OD1 B:ASN103 2.3 13.4 1.0
OD2 B:ASP101 2.3 17.3 1.0
O B:ASN21 2.3 16.0 1.0
O2 F:ZDC101 2.4 21.2 1.0
OD1 B:ASP104 2.4 17.4 1.0
O D:GLY114 2.4 15.3 1.0
O3 F:ZDC101 2.5 20.2 1.0
H2O F:ZDC101 2.7 25.4 1.0
CG B:ASP101 3.1 20.9 1.0
OD1 B:ASP101 3.2 16.8 1.0
H4 F:ZDC101 3.3 27.6 1.0
C2 F:ZDC101 3.3 20.8 1.0
CG B:ASN103 3.4 13.5 1.0
C3 F:ZDC101 3.4 20.9 1.0
C D:GLY114 3.4 28.1 1.0
HD21 B:ASN103 3.4 25.6 1.0
HA B:ASP104 3.5 20.6 1.0
C B:ASN21 3.5 16.2 1.0
OXT D:GLY114 3.5 15.8 1.0
HB3 B:ASN21 3.7 15.6 1.0
H2 F:ZDC101 3.7 24.9 1.0
CG B:ASP104 3.7 17.7 1.0
CA B:CA301 3.7 18.1 1.0
C4 F:ZDC101 3.8 23.0 1.0
ND2 B:ASN103 3.8 21.3 1.0
HA B:SER22 3.8 23.5 1.0
HB2 B:ASN21 3.9 15.6 1.0
HB2 B:SER22 3.9 21.5 1.0
CB B:ASN21 4.1 13.0 1.0
N B:ASP104 4.2 17.0 1.0
H B:ASN103 4.2 24.6 1.0
CA B:ASP104 4.2 17.2 1.0
H3 F:ZDC101 4.3 25.1 1.0
H B:ASP104 4.3 20.4 1.0
OD2 B:ASP99 4.4 22.0 1.0
N B:SER22 4.4 15.6 1.0
CA B:SER22 4.4 19.5 1.0
O4 F:ZDC101 4.5 23.0 1.0
C B:ASN103 4.5 16.3 1.0
CA B:ASN21 4.5 13.2 1.0
CB B:ASP104 4.5 12.9 1.0
OD2 B:ASP104 4.5 14.1 1.0
CB B:ASP101 4.5 20.6 1.0
CB B:SER22 4.6 17.9 1.0
HD22 B:ASN103 4.6 25.6 1.0
HB2 B:ASP101 4.7 24.7 1.0
C1 F:ZDC101 4.7 21.1 1.0
O B:HOH485 4.7 32.7 1.0
CB B:ASN103 4.7 15.6 1.0
CA D:GLY114 4.8 17.7 1.0
HB3 B:ASP104 4.8 15.5 1.0
O B:ASN103 4.9 14.2 1.0
H4O F:ZDC101 4.9 27.6 1.0
N B:ASN103 4.9 20.5 1.0
HB3 B:ASP101 4.9 24.7 1.0
CA B:ASN103 4.9 16.4 1.0
O5 F:ZDC101 4.9 22.8 1.0

Calcium binding site 6 out of 8 in 6s7g

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Calcium binding site 6 out of 8 in the Cfucosylated Linker Peptide SBL1 Bound to Fucose Binding Lectin Lecb (Pa-Iil) From Pseudomonas Aeruginosa at 1.84 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 6 of Cfucosylated Linker Peptide SBL1 Bound to Fucose Binding Lectin Lecb (Pa-Iil) From Pseudomonas Aeruginosa at 1.84 Angstrom Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca303

b:17.2
occ:1.00
OD1 D:ASP104 2.3 15.9 1.0
O D:ASN21 2.3 18.3 1.0
OD1 D:ASN103 2.3 14.8 1.0
O2 H:ZDC101 2.4 15.3 1.0
O3 H:ZDC101 2.4 17.9 1.0
OD2 D:ASP101 2.5 18.1 1.0
O B:GLY114 2.5 17.0 1.0
H3O H:ZDC101 2.7 21.5 1.0
H2O H:ZDC101 2.9 18.4 1.0
CG D:ASP101 3.2 16.0 1.0
H4 H:ZDC101 3.2 20.5 1.0
OD1 D:ASP101 3.2 16.3 1.0
C3 H:ZDC101 3.3 16.5 1.0
HD21 D:ASN103 3.4 23.5 1.0
C2 H:ZDC101 3.4 15.4 1.0
CG D:ASN103 3.4 14.2 1.0
C B:GLY114 3.4 19.5 1.0
HA D:ASP104 3.5 34.9 1.0
OXT B:GLY114 3.5 18.6 1.0
C D:ASN21 3.6 15.4 1.0
CG D:ASP104 3.6 18.1 1.0
CA D:CA201 3.7 18.6 1.0
C4 H:ZDC101 3.7 17.0 1.0
H2 H:ZDC101 3.7 18.5 1.0
HB3 D:ASN21 3.7 20.2 1.0
HB2 D:SER22 3.7 20.9 1.0
ND2 D:ASN103 3.8 19.5 1.0
HA D:SER22 3.8 19.2 1.0
HB2 D:ASN21 3.9 20.2 1.0
CA D:ASP104 4.1 29.1 1.0
N D:ASP104 4.2 18.2 1.0
CB D:ASN21 4.2 16.8 1.0
H3 H:ZDC101 4.2 19.8 1.0
H D:ASN103 4.2 23.8 1.0
H D:ASP104 4.3 21.9 1.0
CA D:SER22 4.4 16.1 1.0
CB D:ASP104 4.4 14.2 1.0
O4 H:ZDC101 4.4 17.2 1.0
N D:SER22 4.4 16.6 1.0
OD2 D:ASP104 4.4 17.3 1.0
OD2 D:ASP99 4.5 17.8 1.0
C D:ASN103 4.5 20.2 1.0
CB D:SER22 4.5 17.4 1.0
CA D:ASN21 4.5 21.3 1.0
O D:HOH432 4.6 32.0 1.0
CB D:ASP101 4.6 19.0 1.0
HD22 D:ASN103 4.6 23.5 1.0
H4O H:ZDC101 4.6 20.6 1.0
C1 H:ZDC101 4.7 16.6 1.0
HB3 D:ASP104 4.7 17.0 1.0
CB D:ASN103 4.7 17.1 1.0
HB2 D:ASP101 4.7 22.9 1.0
CA B:GLY114 4.8 18.3 1.0
O D:ASN103 4.9 18.1 1.0
O5 H:ZDC101 4.9 17.2 1.0
N D:ASN103 4.9 19.9 1.0
CA D:ASN103 5.0 15.5 1.0
C5 H:ZDC101 5.0 17.9 1.0

Calcium binding site 7 out of 8 in 6s7g

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Calcium binding site 7 out of 8 in the Cfucosylated Linker Peptide SBL1 Bound to Fucose Binding Lectin Lecb (Pa-Iil) From Pseudomonas Aeruginosa at 1.84 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 7 of Cfucosylated Linker Peptide SBL1 Bound to Fucose Binding Lectin Lecb (Pa-Iil) From Pseudomonas Aeruginosa at 1.84 Angstrom Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Ca301

b:16.7
occ:1.00
H3O G:ZDC101 2.0 19.4 1.0
OD1 C:ASP99 2.3 20.4 1.0
OE2 C:GLU95 2.4 19.3 1.0
O4 G:ZDC101 2.4 18.3 1.0
OD1 C:ASP101 2.4 17.4 1.0
OD2 C:ASP104 2.5 16.4 1.0
O3 G:ZDC101 2.5 16.1 1.0
OE1 C:GLU95 2.5 16.8 1.0
H4O G:ZDC101 2.7 22.0 1.0
OD1 C:ASP104 2.7 15.2 1.0
CD C:GLU95 2.7 16.6 1.0
CG C:ASP104 2.9 16.8 1.0
C4 G:ZDC101 3.2 16.9 1.0
CG C:ASP99 3.3 25.7 1.0
C3 G:ZDC101 3.3 16.4 1.0
H4 G:ZDC101 3.4 20.3 1.0
H C:ASP101 3.4 18.9 1.0
CG C:ASP101 3.5 15.5 1.0
OD2 C:ASP99 3.5 16.3 1.0
H3 G:ZDC101 3.7 19.6 1.0
CA A:CA303 3.7 16.1 1.0
H C:TYR102 3.7 25.0 1.0
H C:ASP96 3.8 22.0 1.0
H C:ASN100 3.8 21.6 1.0
HA C:GLU95 3.9 29.5 1.0
OD2 C:ASP101 3.9 18.0 1.0
H C:GLY97 3.9 20.6 1.0
O C:HOH455 4.0 17.9 1.0
OD1 C:ASP96 4.1 19.4 1.0
H C:ASP99 4.1 24.8 1.0
N C:ASP101 4.2 15.8 1.0
CG C:GLU95 4.2 18.2 1.0
N C:ASN100 4.3 18.0 1.0
CB C:ASP104 4.4 14.0 1.0
N C:TYR102 4.4 20.8 1.0
H C:ASP104 4.5 16.4 1.0
N C:ASP96 4.5 18.3 1.0
H C:ASN103 4.5 18.1 1.0
HG3 C:GLU95 4.6 21.8 1.0
N C:GLY97 4.6 17.1 1.0
C5 G:ZDC101 4.6 17.6 1.0
C2 G:ZDC101 4.6 18.1 1.0
CB C:ASP99 4.7 16.4 1.0
CA C:GLU95 4.7 24.6 1.0
CB C:ASP101 4.7 14.8 1.0
O2 G:ZDC101 4.7 20.1 1.0
HB2 C:ASP104 4.7 16.7 1.0
HG2 C:GLU95 4.7 21.8 1.0
HA3 C:GLY97 4.8 23.0 1.0
OD1 C:ASN103 4.8 17.9 1.0
HA C:ASN100 4.8 22.3 1.0
N C:ASP99 4.8 20.6 1.0
CA C:ASP101 4.8 14.7 1.0
HB3 C:ASP104 4.9 16.7 1.0
CB C:GLU95 4.9 23.1 1.0
CG C:ASP96 4.9 20.7 1.0
HB2 C:GLU95 4.9 27.7 1.0
C C:ASP99 4.9 20.5 1.0
HA C:TYR102 5.0 18.3 1.0
HB3 C:ASP101 5.0 17.7 1.0

Calcium binding site 8 out of 8 in 6s7g

Go back to Calcium Binding Sites List in 6s7g
Calcium binding site 8 out of 8 in the Cfucosylated Linker Peptide SBL1 Bound to Fucose Binding Lectin Lecb (Pa-Iil) From Pseudomonas Aeruginosa at 1.84 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 8 of Cfucosylated Linker Peptide SBL1 Bound to Fucose Binding Lectin Lecb (Pa-Iil) From Pseudomonas Aeruginosa at 1.84 Angstrom Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Ca201

b:18.6
occ:1.00
OD1 D:ASP101 2.3 16.3 1.0
OD1 D:ASP99 2.4 16.1 1.0
OE2 D:GLU95 2.4 15.1 1.0
OE1 D:GLU95 2.5 18.8 1.0
OD2 D:ASP104 2.5 17.3 1.0
O3 H:ZDC101 2.5 17.9 1.0
O4 H:ZDC101 2.6 17.2 1.0
OD1 D:ASP104 2.6 15.9 1.0
H4O H:ZDC101 2.7 20.6 1.0
CD D:GLU95 2.7 15.1 1.0
CG D:ASP104 2.9 18.1 1.0
H3O H:ZDC101 2.9 21.5 1.0
C4 H:ZDC101 3.3 17.0 1.0
CG D:ASP101 3.3 16.0 1.0
H D:ASP101 3.3 26.1 1.0
CG D:ASP99 3.4 19.0 1.0
H4 H:ZDC101 3.4 20.5 1.0
C3 H:ZDC101 3.4 16.5 1.0
OD2 D:ASP99 3.6 17.8 1.0
CA B:CA303 3.7 17.2 1.0
H D:ASP96 3.7 20.1 1.0
H3 H:ZDC101 3.7 19.8 1.0
H D:TYR102 3.7 26.4 1.0
OD2 D:ASP101 3.8 18.1 1.0
H D:GLY97 3.8 19.4 1.0
HA D:GLU95 3.8 19.0 1.0
H D:ASN100 4.0 18.6 1.0
OD1 D:ASP96 4.0 22.4 1.0
H D:ASP99 4.0 26.4 1.0
O D:HOH431 4.1 22.3 1.0
N D:ASP101 4.1 21.7 1.0
CG D:GLU95 4.2 14.9 1.0
N D:TYR102 4.4 22.0 1.0
CB D:ASP104 4.4 14.2 1.0
N D:ASN100 4.4 15.5 1.0
N D:ASP96 4.5 16.7 1.0
N D:GLY97 4.5 16.2 1.0
H D:ASN103 4.5 23.8 1.0
H D:ASP104 4.5 21.9 1.0
HA3 D:GLY97 4.5 26.4 1.0
CB D:ASP101 4.5 19.0 1.0
HG3 D:GLU95 4.6 17.8 1.0
OD1 D:ASN103 4.6 14.8 1.0
CA D:GLU95 4.7 15.8 1.0
N D:ASP99 4.7 22.0 1.0
C2 H:ZDC101 4.7 15.4 1.0
CB D:ASP99 4.7 20.7 1.0
CA D:ASP101 4.7 14.9 1.0
HG2 D:GLU95 4.7 17.8 1.0
H D:THR98 4.7 25.8 1.0
HB2 D:ASP104 4.7 17.0 1.0
C5 H:ZDC101 4.8 17.9 1.0
O2 H:ZDC101 4.8 15.3 1.0
HB3 D:ASP104 4.8 17.0 1.0
HA D:ASN100 4.9 25.2 1.0
CB D:GLU95 4.9 14.2 1.0
HB2 D:GLU95 4.9 17.1 1.0
HB3 D:ASP101 4.9 22.9 1.0
C D:ASP101 4.9 15.8 1.0
CA D:GLY97 4.9 22.0 1.0
C D:ASP99 4.9 23.3 1.0
N D:ASP104 5.0 18.2 1.0
CG D:ASP96 5.0 18.5 1.0

Reference:

S.Baeriswyl, S.Javor, A.Stocker, T.Darbre, J.-L.Reymond. X-Ray Crystal Structure of A Second Generation Peptide Dendrimer in Complex with Pseudomonas Aeruginosa Lectin Lecb Helv.Chim.Acta 2019.
ISSN: ISSN 0018-019X
DOI: 10.1002/HLCA.201900178
Page generated: Tue Jul 16 14:34:16 2024

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