Calcium in PDB 6ska: Teneurin 2 in Complex with Latrophilin 1 Lec-Olf Domains

The structure of Teneurin 2 in Complex with Latrophilin 1 Lec-Olf Domains, PDB code: 6ska was solved by A.Chu, M.A.Carrasquero, E.Lowe, E.Seiradake, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	52.09 / 3.86
Space group	P 43 2 2
Cell size a, b, c (Å), α, β, γ (°)	96.260, 96.260, 809.220, 90.00, 90.00, 90.00
R / Rfree (%)	n/a / n/a

The binding sites of Calcium atom in the Teneurin 2 in Complex with Latrophilin 1 Lec-Olf Domains (pdb code 6ska). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Teneurin 2 in Complex with Latrophilin 1 Lec-Olf Domains, PDB code: 6ska:

Calcium binding site 1 out of 1 in the Teneurin 2 in Complex with Latrophilin 1 Lec-Olf Domains


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Teneurin 2 in Complex with Latrophilin 1 Lec-Olf Domains within 5.0Å range: probe atom residue distance (Å) B Occ D:Ca1100 b:20.0 occ:1.00 O D:ALA313 2.2 0.5 1.0 OD1 D:ASP264 2.4 0.8 1.0 O D:VAL367 2.7 81.7 1.0 OD1 D:ASN312 2.7 0.3 1.0 CG D:ASP264 3.1 0.0 1.0 C D:ALA313 3.1 0.8 1.0 OD1 D:ASP368 3.3 0.0 1.0 OD2 D:ASP264 3.4 0.5 1.0 CG D:ASP368 3.7 0.1 1.0 C D:VAL367 3.7 82.4 1.0 CG D:ASN312 3.7 0.5 1.0 N D:ALA313 3.8 0.6 1.0 OD2 D:ASP368 3.9 0.1 1.0 N D:PHE314 3.9 0.0 1.0 CA D:PHE314 4.1 0.9 1.0 CB D:PHE314 4.1 0.2 1.0 CA D:ALA313 4.1 0.5 1.0 CB D:ASP264 4.1 0.3 1.0 C D:ASN312 4.3 0.6 1.0 CA D:ASP368 4.4 98.7 1.0 CB D:ASN312 4.4 0.5 1.0 N D:ASP368 4.4 85.8 1.0 N D:VAL367 4.5 76.3 1.0 CB D:ASP368 4.6 0.9 1.0 CA D:VAL367 4.7 82.0 1.0 OH D:TYR255 4.7 0.7 1.0 ND2 D:ASN312 4.7 0.7 1.0 O D:LEU265 4.7 0.9 1.0 CA D:ASN312 4.8 0.5 1.0 O D:ASN312 4.9 0.9 1.0 CB D:ALA266 5.0 0.4 1.0

D.Del Toro, M.A.Carrasquero-Ordaz, A.Chu, T.Ruff, M.Shahin, V.A.Jackson, M.Chavent, M.Berbeira-Santana, G.Seyit-Bremer, S.Brignani, R.Kaufmann, E.Lowe, R.Klein, E.Seiradake. Structural Basis of Teneurin-Latrophilin Interaction in Repulsive Guidance of Migrating Neurons. Cell V. 180 323 2020.
ISSN: ISSN 1097-4172
PubMed: 31928845
DOI: 10.1016/J.CELL.2019.12.014