Calcium in PDB 6sl4: The Unique Cbm-CTHE_0271 of Ruminiclostridium Thermocellum

The structure of The Unique Cbm-CTHE_0271 of Ruminiclostridium Thermocellum, PDB code: 6sl4 was solved by M.V.Milana, R.Almog, O.Yaniv, L.Oded, R.G.Inna, F.Felix, A.B.Edward, L.Raphael, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	67.54 / 1.80
Space group	P 61 2 2
Cell size a, b, c (Å), α, β, γ (°)	77.990, 77.990, 288.830, 90.00, 90.00, 120.00
R / Rfree (%)	20.8 / 25.2

The binding sites of Calcium atom in the The Unique Cbm-CTHE_0271 of Ruminiclostridium Thermocellum (pdb code 6sl4). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 5 binding sites of Calcium where determined in the The Unique Cbm-CTHE_0271 of Ruminiclostridium Thermocellum, PDB code: 6sl4:
Jump to Calcium binding site number: 1; 2; 3; 4; 5;

Calcium binding site 1 out of 5 in the The Unique Cbm-CTHE_0271 of Ruminiclostridium Thermocellum


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of The Unique Cbm-CTHE_0271 of Ruminiclostridium Thermocellum within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca201 b:30.8 occ:1.00 O A:ASN136 2.1 28.2 1.0 OG1 A:THR65 2.2 31.9 1.0 OD1 A:ASN139 2.4 31.6 1.0 OD1 A:ASP140 2.5 28.8 1.0 O A:THR65 2.5 33.1 1.0 O A:HOH320 2.5 25.6 1.0 OE2 A:GLU67 2.6 33.8 1.0 OE1 A:GLU67 2.6 33.1 1.0 CD A:GLU67 2.9 36.1 1.0 C A:ASN136 3.3 28.1 1.0 CG A:ASP140 3.4 28.3 1.0 CG A:ASN139 3.4 35.8 1.0 CB A:THR65 3.5 28.3 1.0 C A:THR65 3.5 28.7 1.0 OD2 A:ASP140 3.6 27.9 1.0 ND2 A:ASN139 3.8 36.0 1.0 CA A:THR65 3.9 29.3 1.0 N A:THR65 3.9 30.4 1.0 CA A:ASN136 4.1 30.5 1.0 CB A:ASN136 4.1 34.1 1.0 N A:ASN136 4.1 29.1 1.0 C A:ASN139 4.3 30.0 1.0 O A:ASN139 4.3 31.8 1.0 N A:GLN137 4.3 26.4 1.0 CG A:GLU67 4.4 38.3 1.0 CG2 A:THR65 4.5 29.1 1.0 N A:ASP140 4.5 27.2 1.0 CA A:GLN137 4.6 30.3 1.0 CB A:ASN139 4.6 34.3 1.0 CB A:ASP140 4.7 25.2 1.0 N A:LYS66 4.7 34.7 1.0 N A:GLU67 4.8 41.6 1.0 CG A:ASN136 4.8 43.6 1.0 CA A:ASN139 4.8 32.0 1.0 N A:ASN139 4.8 31.7 1.0 CA A:ASP140 4.9 25.9 1.0

Calcium binding site 2 out of 5 in the The Unique Cbm-CTHE_0271 of Ruminiclostridium Thermocellum


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of The Unique Cbm-CTHE_0271 of Ruminiclostridium Thermocellum within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca201 b:30.9 occ:1.00 O B:THR65 2.2 29.9 1.0 OG1 B:THR65 2.3 34.5 1.0 O B:ASN136 2.4 28.2 1.0 OD1 B:ASP140 2.4 25.6 1.0 O B:HOH310 2.4 22.8 1.0 OE2 B:GLU67 2.5 34.7 1.0 OD1 B:ASN139 2.5 29.2 1.0 OE1 B:GLU67 2.5 36.1 1.0 CD B:GLU67 2.8 39.0 1.0 C B:THR65 3.2 28.2 1.0 CG B:ASP140 3.3 25.3 1.0 CG B:ASN139 3.4 36.1 1.0 CB B:THR65 3.4 30.0 1.0 C B:ASN136 3.5 23.0 1.0 OD2 B:ASP140 3.6 26.8 1.0 CA B:THR65 3.6 30.1 1.0 N B:THR65 3.7 30.4 1.0 ND2 B:ASN139 3.8 36.0 1.0 O B:ASN139 4.3 32.1 1.0 CB B:ASN136 4.3 31.3 1.0 N B:ASN136 4.3 27.2 1.0 CA B:ASN136 4.3 28.8 1.0 C B:ASN139 4.3 30.2 1.0 CG B:GLU67 4.3 39.2 1.0 N B:LYS66 4.4 33.0 1.0 N B:GLN137 4.6 27.6 1.0 N B:ASP140 4.6 28.9 1.0 O B:HOH306 4.6 36.6 1.0 CB B:ASP140 4.7 24.6 1.0 CB B:ASN139 4.7 33.9 1.0 CG2 B:THR65 4.7 30.1 1.0 CA B:GLN137 4.9 28.3 1.0 CG B:ASN136 4.9 34.9 1.0 CA B:ASN139 4.9 30.4 1.0 CA B:ASP140 4.9 25.5 1.0 N B:GLU67 4.9 39.8 1.0 C B:TYR64 4.9 27.4 1.0 N B:ASN139 4.9 31.7 1.0 CA B:LYS66 5.0 36.5 1.0

Calcium binding site 3 out of 5 in the The Unique Cbm-CTHE_0271 of Ruminiclostridium Thermocellum


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of The Unique Cbm-CTHE_0271 of Ruminiclostridium Thermocellum within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca202 b:28.6 occ:1.00 NH1 B:ARG145 3.1 32.6 1.0 N A:ARG145 3.2 22.4 1.0 N B:ARG145 3.3 22.5 1.0 CD B:ARG145 3.4 37.4 1.0 CG B:ARG145 3.5 33.6 1.0 CG A:ARG145 3.6 37.1 1.0 ND2 B:ASN144 3.6 20.4 1.0 CG A:ASN144 3.7 20.3 1.0 ND2 A:ASN144 3.7 20.0 1.0 CG B:ASN144 3.7 19.9 1.0 CD A:ARG145 3.8 43.2 1.0 CB B:ARG145 3.8 26.8 1.0 OD1 A:ASN144 3.8 19.4 1.0 CB A:ARG145 3.9 30.6 1.0 CA A:ASN144 3.9 21.9 1.0 OD1 B:ASN144 3.9 20.4 1.0 CA B:ASN144 3.9 24.6 1.0 CZ B:ARG145 4.0 35.5 1.0 C A:ASN144 4.0 21.9 1.0 C B:ASN144 4.1 22.8 1.0 NE B:ARG145 4.1 38.7 1.0 CA A:ARG145 4.2 23.1 1.0 CA B:ARG145 4.2 24.6 1.0 CB A:ASN144 4.4 20.0 1.0 CB B:ASN144 4.4 20.2 1.0 CE2 B:TYR143 4.7 25.3 1.0 CE2 A:TYR143 4.8 25.6 1.0 O B:TYR143 4.8 24.5 1.0 CD2 B:TYR143 4.9 23.6 1.0 O A:TYR143 4.9 25.6 1.0 CD2 A:TYR143 5.0 23.6 1.0

Calcium binding site 4 out of 5 in the The Unique Cbm-CTHE_0271 of Ruminiclostridium Thermocellum


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of The Unique Cbm-CTHE_0271 of Ruminiclostridium Thermocellum within 5.0Å range: probe atom residue distance (Å) B Occ C:Ca201 b:29.2 occ:1.00 O C:THR65 2.2 33.8 1.0 O C:ASN136 2.3 26.5 1.0 OD1 C:ASP140 2.5 26.8 1.0 OE2 C:GLU67 2.5 31.4 1.0 OG1 C:THR65 2.5 29.2 1.0 OD1 C:ASN139 2.5 30.3 1.0 O C:HOH312 2.5 22.8 1.0 OE1 C:GLU67 2.5 29.1 1.0 CD C:GLU67 2.8 35.1 1.0 C C:THR65 3.3 30.3 1.0 CG C:ASP140 3.4 26.1 1.0 C C:ASN136 3.4 25.1 1.0 CG C:ASN139 3.5 34.3 1.0 CB C:THR65 3.5 27.6 1.0 OD2 C:ASP140 3.7 27.4 1.0 CA C:THR65 3.8 29.9 1.0 N C:THR65 3.9 28.5 1.0 ND2 C:ASN139 3.9 36.4 1.0 N C:ASN136 4.1 25.8 1.0 CA C:ASN136 4.2 29.9 1.0 O C:ASN139 4.3 28.0 1.0 CB C:ASN136 4.3 33.9 1.0 CG C:GLU67 4.4 37.0 1.0 C C:ASN139 4.4 27.6 1.0 N C:LYS66 4.4 32.6 1.0 N C:GLN137 4.5 25.5 1.0 N C:GLU67 4.6 36.2 1.0 O C:HOH317 4.7 34.8 1.0 CB C:ASP140 4.7 25.4 1.0 N C:ASP140 4.7 25.1 1.0 CA C:GLN137 4.7 25.3 1.0 CB C:ASN139 4.7 30.6 1.0 CG2 C:THR65 4.8 30.6 1.0 CA C:LYS66 4.9 35.8 1.0 N C:ASN139 4.9 25.4 1.0 CA C:ASP140 4.9 27.1 1.0 CA C:ASN139 4.9 29.9 1.0

Calcium binding site 5 out of 5 in the The Unique Cbm-CTHE_0271 of Ruminiclostridium Thermocellum


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 5 of The Unique Cbm-CTHE_0271 of Ruminiclostridium Thermocellum within 5.0Å range: probe atom residue distance (Å) B Occ C:Ca202 b:31.2 occ:0.50 NH1 C:ARG145 3.0 25.8 0.5 N C:ARG145 3.2 24.6 1.0 CG C:ARG145 3.4 35.4 0.5 CD C:ARG145 3.4 28.4 0.5 CG C:ARG145 3.6 28.2 0.5 CB C:ARG145 3.7 30.8 0.5 CG C:ASN144 3.7 23.4 1.0 ND2 C:ASN144 3.7 23.1 1.0 CB C:ARG145 3.7 27.4 0.5 OD1 C:ASN144 3.8 20.9 1.0 CA C:ASN144 3.9 25.3 1.0 CD C:ARG145 3.9 35.8 0.5 C C:ASN144 4.0 25.5 1.0 CZ C:ARG145 4.1 27.4 0.5 CA C:ARG145 4.1 27.8 0.5 CA C:ARG145 4.1 26.2 0.5 NE C:ARG145 4.2 25.8 0.5 CB C:ASN144 4.4 24.8 1.0 CE2 C:TYR143 4.8 24.3 1.0 O C:TYR143 4.8 22.3 1.0

M.V.Milana, R.Almog, O.Yaniv, L.Oded, R.G.Inna, F.Felix, A.B.Edward, L.Raphael. The Unique Cbm-CTHE_0271 of Ruminiclostridium Thermocellum To Be Published.