Calcium in PDB 6sqi: Crystal Structure of Mouse PRMT6 with C-Terminal Tev Cleavage Site

Enzymatic activity of Crystal Structure of Mouse PRMT6 with C-Terminal Tev Cleavage Site

All present enzymatic activity of Crystal Structure of Mouse PRMT6 with C-Terminal Tev Cleavage Site:
2.1.1.319;

Protein crystallography data

The structure of Crystal Structure of Mouse PRMT6 with C-Terminal Tev Cleavage Site, PDB code: 6sqi was solved by L.Bonnefond, J.Cavarelli, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 40.69 / 1.60
Space group I 41
Cell size a, b, c (Å), α, β, γ (°) 79.644, 79.644, 117.738, 90.00, 90.00, 90.00
R / Rfree (%) 14.4 / 16.7

Calcium Binding Sites:

The binding sites of Calcium atom in the Crystal Structure of Mouse PRMT6 with C-Terminal Tev Cleavage Site (pdb code 6sqi). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Crystal Structure of Mouse PRMT6 with C-Terminal Tev Cleavage Site, PDB code: 6sqi:

Calcium binding site 1 out of 1 in 6sqi

Go back to Calcium Binding Sites List in 6sqi
Calcium binding site 1 out of 1 in the Crystal Structure of Mouse PRMT6 with C-Terminal Tev Cleavage Site


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of Mouse PRMT6 with C-Terminal Tev Cleavage Site within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca401

b:16.8
occ:1.00
OD1 A:ASN382 2.3 18.7 1.0
O A:HOH592 2.3 15.6 1.0
O A:HOH576 2.4 15.0 1.0
OE1 A:GLU167 2.4 15.9 1.0
O A:HOH667 2.5 21.8 1.0
O A:HOH566 2.5 15.7 1.0
OE2 A:GLU167 2.6 14.8 1.0
CD A:GLU167 2.9 14.3 1.0
CG A:ASN382 3.4 16.6 1.0
HE2 A:HIS166 3.4 15.7 1.0
HD21 A:ASN382 3.7 20.6 1.0
ND2 A:ASN382 4.0 17.2 1.0
NE2 A:HIS166 4.2 13.1 1.0
HA A:ASN382 4.3 20.9 1.0
CG A:GLU167 4.4 12.8 1.0
O A:SER380 4.4 20.5 1.0
O A:ASP378 4.4 26.9 1.0
O A:HOH695 4.5 20.8 1.0
O A:GLU381 4.6 19.6 1.0
OG A:SER380 4.6 22.0 1.0
CB A:ASN382 4.6 16.9 1.0
O A:HOH598 4.6 17.2 1.0
O A:PHE385 4.7 18.8 1.0
O A:HOH577 4.7 15.6 1.0
HG2 A:GLU167 4.7 15.3 1.0
O A:HOH549 4.7 18.5 1.0
HG3 A:GLU167 4.7 15.3 1.0
HB3 A:ASN382 4.8 20.3 1.0
HE1 A:HIS166 4.8 16.1 1.0
HD22 A:ASN382 4.9 20.6 1.0
CA A:ASN382 4.9 17.5 1.0
HG A:SER380 4.9 26.4 1.0
CE1 A:HIS166 4.9 13.4 1.0
HB2 A:PHE385 5.0 23.0 1.0

Reference:

L.Bonnefond, J.Cavarelli. Crystal Structure of Mouse PRMT6 in Complex with Inhibitors To Be Published.
Page generated: Sat Dec 12 07:39:25 2020

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