Calcium in PDB 6svj: Terahertz Irradiated Structure of Bovine Trypsin (Odd Frames of Crystal X42)

All present enzymatic activity of Terahertz Irradiated Structure of Bovine Trypsin (Odd Frames of Crystal X42):
3.4.21.4;

The structure of Terahertz Irradiated Structure of Bovine Trypsin (Odd Frames of Crystal X42), PDB code: 6svj was solved by V.Ahlberg Gagner, I.Lundholm, M.J.Garcia-Bonete, H.Rodilla, R.Friedman, V.Zhaunerchyk, G.Bourenkov, T.Schneider, J.Stake, G.Katona, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	43.12 / 1.16
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	53.910, 57.150, 65.700, 90.00, 90.00, 90.00
R / Rfree (%)	15 / 19.2

The binding sites of Calcium atom in the Terahertz Irradiated Structure of Bovine Trypsin (Odd Frames of Crystal X42) (pdb code 6svj). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Terahertz Irradiated Structure of Bovine Trypsin (Odd Frames of Crystal X42), PDB code: 6svj:

Calcium binding site 1 out of 1 in the Terahertz Irradiated Structure of Bovine Trypsin (Odd Frames of Crystal X42)


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Terahertz Irradiated Structure of Bovine Trypsin (Odd Frames of Crystal X42) within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca301 b:7.2 occ:1.00 OE1 A:GLU70 2.2 7.5 1.0 O A:VAL75 2.3 7.3 1.0 OE2 A:GLU80 2.3 8.0 1.0 O A:ASN72 2.3 7.5 1.0 O A:HOH417 2.4 8.2 1.0 CD A:GLU80 3.4 7.0 1.0 CD A:GLU70 3.4 7.1 1.0 C A:VAL75 3.4 7.5 1.0 C A:ASN72 3.5 6.8 1.0 CG A:GLU80 3.7 8.1 1.0 OE2 A:GLU70 3.8 7.8 1.0 CA A:VAL76 4.1 8.1 1.0 N A:GLU77 4.1 8.9 1.0 N A:VAL76 4.2 7.6 1.0 N A:VAL75 4.2 7.5 1.0 CA A:ILE73 4.3 8.0 1.0 OE1 A:GLU77 4.3 10.6 1.0 N A:ILE73 4.3 7.7 1.0 N A:ASN72 4.3 7.4 1.0 CA A:ASN72 4.4 8.0 1.0 CA A:VAL75 4.5 8.6 1.0 CG A:GLU77 4.5 9.5 1.0 OE1 A:GLU80 4.5 8.2 1.0 O A:HOH506 4.5 9.1 1.0 C A:ILE73 4.5 7.5 1.0 N A:ASP71 4.5 8.0 1.0 C A:VAL76 4.6 9.8 1.0 CG A:GLU70 4.6 7.1 1.0 CA A:GLU70 4.7 6.9 1.0 CD A:GLU77 4.8 10.2 1.0 CB A:GLU77 4.8 10.0 1.0 CB A:ASN72 4.8 8.6 1.0 CB A:GLU70 4.8 6.7 1.0 O A:ILE73 4.9 7.9 1.0 N A:ASN74 4.9 7.7 1.0 C A:ASP71 5.0 7.8 1.0

V.Ahlberg Gagner, I.Lundholm, M.J.Garcia-Bonete, H.Rodilla, R.Friedman, V.Zhaunerchyk, G.Bourenkov, T.Schneider, J.Stake, G.Katona. Clustering of Atomic Displacement Parameters in Bovine Trypsin Reveals A Distributed Lattice of Atoms with Shared Chemical Properties Sci Rep 2020.
ISSN: ESSN 2045-2322