Atomistry » Calcium » PDB 6suw-6t6v » 6svr
Atomistry »
  Calcium »
    PDB 6suw-6t6v »
      6svr »

Calcium in PDB 6svr: Reference Structure of Bovine Trypsin (Odd Frames of Crystal X28)

Enzymatic activity of Reference Structure of Bovine Trypsin (Odd Frames of Crystal X28)

All present enzymatic activity of Reference Structure of Bovine Trypsin (Odd Frames of Crystal X28):
3.4.21.4;

Protein crystallography data

The structure of Reference Structure of Bovine Trypsin (Odd Frames of Crystal X28), PDB code: 6svr was solved by V.Ahlberg Gagner, I.Lundholm, M.J.Garcia-Bonete, H.Rodilla, R.Friedman, V.Zhaunerchyk, G.Bourenkov, T.Schneider, J.Stake, G.Katona, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 42.89 / 1.16
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 53.410, 56.860, 65.190, 90.00, 90.00, 90.00
R / Rfree (%) 13.1 / 17.1

Calcium Binding Sites:

The binding sites of Calcium atom in the Reference Structure of Bovine Trypsin (Odd Frames of Crystal X28) (pdb code 6svr). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Reference Structure of Bovine Trypsin (Odd Frames of Crystal X28), PDB code: 6svr:

Calcium binding site 1 out of 1 in 6svr

Go back to Calcium Binding Sites List in 6svr
Calcium binding site 1 out of 1 in the Reference Structure of Bovine Trypsin (Odd Frames of Crystal X28)


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Reference Structure of Bovine Trypsin (Odd Frames of Crystal X28) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca301

b:8.3
occ:1.00
OE1 A:GLU70 2.2 8.5 1.0
O A:VAL75 2.3 8.8 1.0
OE2 A:GLU80 2.3 9.2 1.0
O A:ASN72 2.3 8.9 1.0
O A:HOH412 2.4 9.4 1.0
CD A:GLU70 3.3 8.4 1.0
C A:VAL75 3.4 8.8 1.0
CD A:GLU80 3.4 8.7 1.0
C A:ASN72 3.5 8.5 1.0
OE2 A:GLU70 3.7 8.9 1.0
CG A:GLU80 3.7 9.8 1.0
CA A:VAL76 4.0 9.4 1.0
N A:GLU77 4.1 9.8 1.0
N A:VAL76 4.1 8.9 1.0
N A:VAL75 4.2 9.1 1.0
CA A:ILE73 4.2 9.4 1.0
OE1 A:GLU77 4.2 10.4 1.0
N A:ILE73 4.3 8.8 1.0
N A:ASN72 4.3 8.7 1.0
CA A:ASN72 4.4 8.8 1.0
CA A:VAL75 4.4 9.7 1.0
CG A:GLU77 4.5 10.3 1.0
OE1 A:GLU80 4.5 9.8 1.0
C A:ILE73 4.5 8.9 1.0
N A:ASP71 4.5 8.6 1.0
O A:HOH510 4.5 10.4 1.0
C A:VAL76 4.6 9.9 1.0
CG A:GLU70 4.6 8.3 1.0
CA A:GLU70 4.7 8.3 1.0
CD A:GLU77 4.8 11.7 1.0
CB A:ASN72 4.8 10.0 1.0
CB A:GLU77 4.8 10.8 1.0
CB A:GLU70 4.8 8.5 1.0
O A:ILE73 4.9 9.6 1.0
N A:ASN74 4.9 8.6 1.0
C A:ASP71 5.0 9.0 1.0

Reference:

V.Ahlberg Gagner, I.Lundholm, M.J.Garcia-Bonete, H.Rodilla, R.Friedman, V.Zhaunerchyk, G.Bourenkov, T.Schneider, J.Stake, G.Katona. Clustering of Atomic Displacement Parameters in Bovine Trypsin Reveals A Distributed Lattice of Atoms with Shared Chemical Properties Sci Rep 2020.
ISSN: ESSN 2045-2322
Page generated: Tue Jul 16 14:59:56 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy