Calcium in PDB 6t1d: Pleurotus Ostreatus Lectin (Pol), Compelx with Melibiose
Protein crystallography data
The structure of Pleurotus Ostreatus Lectin (Pol), Compelx with Melibiose, PDB code: 6t1d
was solved by
L.Destefanis,
M.Perduca,
M.Bovi,
H.L.Monaco,
S.Capaldi,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
29.95 /
2.20
|
Space group
|
P 1 21 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
109.605,
136.421,
110.022,
90.00,
112.37,
90.00
|
R / Rfree (%)
|
21.2 /
26.5
|
Calcium Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
12;
Binding sites:
The binding sites of Calcium atom in the Pleurotus Ostreatus Lectin (Pol), Compelx with Melibiose
(pdb code 6t1d). This binding sites where shown within
5.0 Angstroms radius around Calcium atom.
In total 12 binding sites of Calcium where determined in the
Pleurotus Ostreatus Lectin (Pol), Compelx with Melibiose, PDB code: 6t1d:
Jump to Calcium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Calcium binding site 1 out
of 12 in 6t1d
Go back to
Calcium Binding Sites List in 6t1d
Calcium binding site 1 out
of 12 in the Pleurotus Ostreatus Lectin (Pol), Compelx with Melibiose
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 1 of Pleurotus Ostreatus Lectin (Pol), Compelx with Melibiose within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca401
b:41.0
occ:1.00
|
OD1
|
A:ASN138
|
2.3
|
36.5
|
1.0
|
O3
|
A:MLB501
|
2.4
|
64.3
|
1.0
|
OG
|
A:SER143
|
2.4
|
45.8
|
1.0
|
OD2
|
A:ASP98
|
2.4
|
37.2
|
1.0
|
OD1
|
A:ASP97
|
2.4
|
41.0
|
1.0
|
O
|
A:PRO144
|
2.6
|
31.8
|
1.0
|
O4
|
A:MLB501
|
2.8
|
58.2
|
1.0
|
C4
|
A:MLB501
|
3.3
|
56.7
|
1.0
|
CG
|
A:ASP98
|
3.3
|
39.7
|
1.0
|
C3
|
A:MLB501
|
3.4
|
60.3
|
1.0
|
CB
|
A:SER143
|
3.4
|
41.1
|
1.0
|
CG
|
A:ASP97
|
3.4
|
33.9
|
1.0
|
CG
|
A:ASN138
|
3.5
|
40.4
|
1.0
|
OD2
|
A:ASP97
|
3.7
|
28.7
|
1.0
|
OD1
|
A:ASP98
|
3.7
|
42.1
|
1.0
|
C
|
A:PRO144
|
3.8
|
38.9
|
1.0
|
ND2
|
A:ASN138
|
4.1
|
50.9
|
1.0
|
C
|
A:SER143
|
4.1
|
37.5
|
1.0
|
CB
|
A:VAL140
|
4.2
|
38.6
|
1.0
|
O
|
A:VAL140
|
4.2
|
39.7
|
1.0
|
N
|
A:PRO144
|
4.3
|
40.0
|
1.0
|
N
|
A:VAL140
|
4.3
|
43.7
|
1.0
|
O
|
A:SER143
|
4.4
|
42.2
|
1.0
|
CA
|
A:SER143
|
4.4
|
42.5
|
1.0
|
C2
|
A:MLB501
|
4.4
|
57.6
|
1.0
|
CG2
|
A:VAL140
|
4.6
|
37.0
|
1.0
|
N
|
A:LEU139
|
4.6
|
38.5
|
1.0
|
CA
|
A:PRO144
|
4.6
|
43.4
|
1.0
|
C
|
A:ASP97
|
4.6
|
21.3
|
1.0
|
CB
|
A:ASP98
|
4.6
|
30.0
|
1.0
|
O
|
A:ASP97
|
4.6
|
18.3
|
1.0
|
CB
|
A:ASN138
|
4.7
|
21.4
|
1.0
|
CA
|
A:VAL140
|
4.7
|
38.4
|
1.0
|
N
|
A:ASP98
|
4.7
|
33.9
|
1.0
|
CA
|
A:ASN138
|
4.7
|
31.3
|
1.0
|
C5
|
A:MLB501
|
4.8
|
62.6
|
1.0
|
CB
|
A:ASP97
|
4.8
|
30.9
|
1.0
|
N
|
A:ALA145
|
4.8
|
39.1
|
1.0
|
CA
|
A:ALA145
|
4.9
|
34.5
|
1.0
|
C
|
A:VAL140
|
4.9
|
40.6
|
1.0
|
|
Calcium binding site 2 out
of 12 in 6t1d
Go back to
Calcium Binding Sites List in 6t1d
Calcium binding site 2 out
of 12 in the Pleurotus Ostreatus Lectin (Pol), Compelx with Melibiose
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 2 of Pleurotus Ostreatus Lectin (Pol), Compelx with Melibiose within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca402
b:74.6
occ:1.00
|
O
|
A:PRO305
|
2.0
|
27.3
|
1.0
|
O3
|
A:MLB502
|
2.1
|
33.7
|
1.0
|
OD1
|
A:ASP259
|
2.2
|
26.7
|
1.0
|
OD2
|
A:ASP260
|
2.4
|
21.1
|
1.0
|
O
|
A:GLY303
|
2.5
|
36.0
|
1.0
|
O4
|
A:MLB502
|
2.5
|
33.7
|
1.0
|
OD1
|
A:ASN301
|
2.5
|
41.3
|
1.0
|
CG
|
A:ASP259
|
3.1
|
30.7
|
1.0
|
C3
|
A:MLB502
|
3.1
|
32.2
|
1.0
|
C4
|
A:MLB502
|
3.1
|
24.4
|
1.0
|
C
|
A:PRO305
|
3.3
|
23.2
|
1.0
|
CG
|
A:ASP260
|
3.3
|
21.2
|
1.0
|
OD2
|
A:ASP259
|
3.4
|
33.6
|
1.0
|
C
|
A:GLY303
|
3.6
|
31.9
|
1.0
|
OD1
|
A:ASP260
|
3.7
|
34.7
|
1.0
|
CG
|
A:ASN301
|
3.8
|
30.8
|
1.0
|
C2
|
A:MLB502
|
3.9
|
31.2
|
1.0
|
N
|
A:GLY303
|
4.0
|
22.0
|
1.0
|
N
|
A:PRO305
|
4.0
|
27.5
|
1.0
|
C
|
A:GLY304
|
4.1
|
36.6
|
1.0
|
N
|
A:ALA306
|
4.2
|
22.2
|
1.0
|
CA
|
A:PRO305
|
4.2
|
21.1
|
1.0
|
O
|
A:GLY304
|
4.3
|
39.0
|
1.0
|
CA
|
A:ALA306
|
4.3
|
19.8
|
1.0
|
N
|
A:GLY302
|
4.3
|
26.5
|
1.0
|
O
|
A:ASP259
|
4.4
|
20.1
|
1.0
|
C
|
A:ASP259
|
4.4
|
17.8
|
1.0
|
CA
|
A:GLY303
|
4.4
|
20.3
|
1.0
|
CB
|
A:ASP259
|
4.5
|
23.0
|
1.0
|
CB
|
A:ASP260
|
4.5
|
19.8
|
1.0
|
N
|
A:ASP260
|
4.5
|
19.5
|
1.0
|
N
|
A:GLY304
|
4.5
|
21.8
|
1.0
|
ND2
|
A:ASN301
|
4.5
|
36.4
|
1.0
|
CD
|
A:PRO305
|
4.6
|
22.0
|
1.0
|
CA
|
A:GLY304
|
4.6
|
28.8
|
1.0
|
C5
|
A:MLB502
|
4.6
|
23.9
|
1.0
|
O2
|
A:MLB502
|
4.7
|
48.9
|
1.0
|
CB
|
A:ALA306
|
4.8
|
10.2
|
1.0
|
CA
|
A:ASN301
|
4.8
|
22.1
|
1.0
|
CB
|
A:ASN301
|
4.8
|
20.8
|
1.0
|
CB
|
A:PRO305
|
4.9
|
11.4
|
1.0
|
CA
|
A:ASP260
|
4.9
|
21.3
|
1.0
|
CA
|
A:ASP259
|
4.9
|
16.6
|
1.0
|
C
|
A:GLY302
|
4.9
|
28.4
|
1.0
|
C
|
A:ASN301
|
5.0
|
15.1
|
1.0
|
|
Calcium binding site 3 out
of 12 in 6t1d
Go back to
Calcium Binding Sites List in 6t1d
Calcium binding site 3 out
of 12 in the Pleurotus Ostreatus Lectin (Pol), Compelx with Melibiose
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 3 of Pleurotus Ostreatus Lectin (Pol), Compelx with Melibiose within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ca401
b:44.4
occ:1.00
|
OD1
|
B:ASN138
|
2.4
|
48.5
|
1.0
|
OD1
|
B:ASP97
|
2.4
|
43.9
|
1.0
|
OG
|
B:SER143
|
2.5
|
59.8
|
1.0
|
O3
|
B:MLB501
|
2.5
|
64.2
|
1.0
|
OD2
|
B:ASP98
|
2.6
|
66.3
|
1.0
|
O
|
B:PRO144
|
2.8
|
49.3
|
1.0
|
O4
|
B:MLB501
|
3.0
|
38.4
|
1.0
|
CG
|
B:ASP98
|
3.2
|
63.3
|
1.0
|
OD1
|
B:ASP98
|
3.3
|
62.3
|
1.0
|
CG
|
B:ASP97
|
3.3
|
41.4
|
1.0
|
CB
|
B:SER143
|
3.4
|
51.6
|
1.0
|
C4
|
B:MLB501
|
3.4
|
57.8
|
1.0
|
CG
|
B:ASN138
|
3.5
|
52.3
|
1.0
|
C3
|
B:MLB501
|
3.5
|
64.4
|
1.0
|
OD2
|
B:ASP97
|
3.6
|
37.6
|
1.0
|
C
|
B:PRO144
|
4.0
|
52.1
|
1.0
|
ND2
|
B:ASN138
|
4.1
|
62.7
|
1.0
|
C
|
B:SER143
|
4.3
|
45.4
|
1.0
|
N
|
B:PRO144
|
4.4
|
46.9
|
1.0
|
O
|
B:VAL140
|
4.4
|
59.1
|
1.0
|
CB
|
B:ASP98
|
4.5
|
50.6
|
1.0
|
CB
|
B:VAL140
|
4.5
|
56.1
|
1.0
|
CA
|
B:SER143
|
4.5
|
51.5
|
1.0
|
C2
|
B:MLB501
|
4.6
|
62.3
|
1.0
|
N
|
B:VAL140
|
4.6
|
49.6
|
1.0
|
O
|
B:SER143
|
4.6
|
43.5
|
1.0
|
C
|
B:ASP97
|
4.6
|
34.6
|
1.0
|
N
|
B:ASP98
|
4.7
|
34.0
|
1.0
|
CB
|
B:ASP97
|
4.7
|
39.8
|
1.0
|
CB
|
B:ASN138
|
4.7
|
34.5
|
1.0
|
N
|
B:LEU139
|
4.7
|
47.5
|
1.0
|
O
|
B:ASP97
|
4.8
|
27.3
|
1.0
|
CA
|
B:PRO144
|
4.8
|
50.9
|
1.0
|
CA
|
B:ASN138
|
4.9
|
40.5
|
1.0
|
C5
|
B:MLB501
|
4.9
|
58.7
|
1.0
|
N
|
B:ALA145
|
5.0
|
46.7
|
1.0
|
CA
|
B:VAL140
|
5.0
|
57.3
|
1.0
|
|
Calcium binding site 4 out
of 12 in 6t1d
Go back to
Calcium Binding Sites List in 6t1d
Calcium binding site 4 out
of 12 in the Pleurotus Ostreatus Lectin (Pol), Compelx with Melibiose
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 4 of Pleurotus Ostreatus Lectin (Pol), Compelx with Melibiose within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ca402
b:40.1
occ:1.00
|
O
|
B:PRO305
|
2.3
|
23.8
|
1.0
|
OD2
|
B:ASP260
|
2.4
|
18.5
|
1.0
|
OD1
|
B:ASP259
|
2.4
|
23.7
|
1.0
|
O
|
B:GLY303
|
2.4
|
37.0
|
1.0
|
O3
|
B:MLB502
|
2.5
|
21.9
|
1.0
|
OD1
|
B:ASN301
|
2.5
|
31.4
|
1.0
|
O4
|
B:MLB502
|
2.6
|
25.6
|
1.0
|
CG
|
B:ASP260
|
3.1
|
20.0
|
1.0
|
CG
|
B:ASP259
|
3.3
|
17.4
|
1.0
|
OD1
|
B:ASP260
|
3.4
|
35.0
|
1.0
|
C4
|
B:MLB502
|
3.4
|
30.1
|
1.0
|
C3
|
B:MLB502
|
3.5
|
27.2
|
1.0
|
C
|
B:PRO305
|
3.5
|
24.5
|
1.0
|
C
|
B:GLY303
|
3.5
|
17.8
|
1.0
|
OD2
|
B:ASP259
|
3.6
|
19.4
|
1.0
|
CG
|
B:ASN301
|
3.7
|
21.7
|
1.0
|
N
|
B:GLY303
|
4.0
|
19.4
|
1.0
|
C2
|
B:MLB502
|
4.0
|
27.4
|
1.0
|
N
|
B:PRO305
|
4.1
|
29.0
|
1.0
|
C
|
B:GLY304
|
4.1
|
30.2
|
1.0
|
ND2
|
B:ASN301
|
4.4
|
31.6
|
1.0
|
CA
|
B:GLY303
|
4.4
|
18.9
|
1.0
|
CA
|
B:PRO305
|
4.4
|
24.6
|
1.0
|
CB
|
B:ASP260
|
4.4
|
16.5
|
1.0
|
O
|
B:GLY304
|
4.4
|
38.9
|
1.0
|
N
|
B:GLY302
|
4.5
|
30.4
|
1.0
|
N
|
B:GLY304
|
4.5
|
20.1
|
1.0
|
N
|
B:ALA306
|
4.5
|
20.9
|
1.0
|
CA
|
B:GLY304
|
4.6
|
21.2
|
1.0
|
C
|
B:ASP259
|
4.6
|
10.3
|
1.0
|
N
|
B:ASP260
|
4.6
|
13.4
|
1.0
|
CA
|
B:ALA306
|
4.6
|
18.0
|
1.0
|
CD
|
B:PRO305
|
4.6
|
20.6
|
1.0
|
O
|
B:ASP259
|
4.7
|
36.0
|
1.0
|
CB
|
B:ASP259
|
4.7
|
10.7
|
1.0
|
O2
|
B:MLB502
|
4.8
|
33.0
|
1.0
|
C5
|
B:MLB502
|
4.8
|
31.2
|
1.0
|
CA
|
B:ASP260
|
4.9
|
18.6
|
1.0
|
CB
|
B:ASN301
|
4.9
|
10.6
|
1.0
|
C
|
B:GLY302
|
4.9
|
27.2
|
1.0
|
CA
|
B:ASN301
|
5.0
|
27.6
|
1.0
|
CB
|
B:PRO305
|
5.0
|
15.8
|
1.0
|
|
Calcium binding site 5 out
of 12 in 6t1d
Go back to
Calcium Binding Sites List in 6t1d
Calcium binding site 5 out
of 12 in the Pleurotus Ostreatus Lectin (Pol), Compelx with Melibiose
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 5 of Pleurotus Ostreatus Lectin (Pol), Compelx with Melibiose within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Ca401
b:49.2
occ:1.00
|
OD1
|
C:ASP97
|
2.4
|
47.8
|
1.0
|
O3
|
C:MLB501
|
2.4
|
69.1
|
1.0
|
O
|
C:PRO144
|
2.4
|
26.1
|
1.0
|
OG
|
C:SER143
|
2.5
|
57.1
|
1.0
|
OD1
|
C:ASN138
|
2.5
|
48.9
|
1.0
|
OD1
|
C:ASP98
|
2.6
|
60.8
|
1.0
|
C4
|
C:MLB501
|
3.1
|
70.8
|
1.0
|
OD2
|
C:ASP98
|
3.1
|
53.8
|
1.0
|
O4
|
C:MLB501
|
3.1
|
89.5
|
1.0
|
CG
|
C:ASP98
|
3.2
|
49.8
|
1.0
|
C3
|
C:MLB501
|
3.2
|
72.6
|
1.0
|
CG
|
C:ASP97
|
3.3
|
37.6
|
1.0
|
CB
|
C:SER143
|
3.4
|
54.0
|
1.0
|
OD2
|
C:ASP97
|
3.6
|
38.9
|
1.0
|
C
|
C:PRO144
|
3.6
|
39.5
|
1.0
|
CG
|
C:ASN138
|
3.7
|
40.4
|
1.0
|
C
|
C:SER143
|
4.2
|
50.7
|
1.0
|
N
|
C:PRO144
|
4.2
|
39.8
|
1.0
|
ND2
|
C:ASN138
|
4.3
|
35.0
|
1.0
|
O
|
C:VAL140
|
4.4
|
57.3
|
1.0
|
O
|
C:SER143
|
4.4
|
62.2
|
1.0
|
CA
|
C:SER143
|
4.5
|
51.2
|
1.0
|
CB
|
C:VAL140
|
4.5
|
42.1
|
1.0
|
C2
|
C:MLB501
|
4.5
|
74.6
|
1.0
|
C5
|
C:MLB501
|
4.5
|
63.0
|
1.0
|
CB
|
C:ASP98
|
4.5
|
37.4
|
1.0
|
CA
|
C:PRO144
|
4.5
|
35.0
|
1.0
|
C
|
C:ASP97
|
4.6
|
35.9
|
1.0
|
N
|
C:ALA145
|
4.6
|
45.6
|
1.0
|
N
|
C:VAL140
|
4.6
|
52.9
|
1.0
|
CA
|
C:ALA145
|
4.6
|
42.4
|
1.0
|
CB
|
C:ASP97
|
4.6
|
28.2
|
1.0
|
N
|
C:ASP98
|
4.7
|
32.8
|
1.0
|
O
|
C:ASP97
|
4.7
|
46.7
|
1.0
|
N
|
C:LEU139
|
4.8
|
34.4
|
1.0
|
CB
|
C:ASN138
|
4.8
|
30.7
|
1.0
|
CA
|
C:ASN138
|
4.9
|
37.5
|
1.0
|
CA
|
C:ASP98
|
4.9
|
23.6
|
1.0
|
CA
|
C:ASP97
|
5.0
|
21.7
|
1.0
|
CG2
|
C:VAL140
|
5.0
|
44.5
|
1.0
|
CB
|
C:ALA145
|
5.0
|
32.2
|
1.0
|
|
Calcium binding site 6 out
of 12 in 6t1d
Go back to
Calcium Binding Sites List in 6t1d
Calcium binding site 6 out
of 12 in the Pleurotus Ostreatus Lectin (Pol), Compelx with Melibiose
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 6 of Pleurotus Ostreatus Lectin (Pol), Compelx with Melibiose within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Ca402
b:47.9
occ:1.00
|
O
|
C:PRO305
|
2.3
|
48.2
|
1.0
|
OD1
|
C:ASP259
|
2.4
|
49.6
|
1.0
|
O
|
C:GLY303
|
2.4
|
69.0
|
1.0
|
OD2
|
C:ASP260
|
2.4
|
52.3
|
1.0
|
OD1
|
C:ASN301
|
2.4
|
48.1
|
1.0
|
O3
|
C:MLB502
|
2.5
|
48.1
|
1.0
|
O4
|
C:MLB502
|
2.8
|
59.1
|
1.0
|
CG
|
C:ASP260
|
3.3
|
49.0
|
1.0
|
CG
|
C:ASP259
|
3.3
|
45.5
|
1.0
|
C
|
C:GLY303
|
3.5
|
58.7
|
1.0
|
C
|
C:PRO305
|
3.6
|
48.6
|
1.0
|
OD2
|
C:ASP259
|
3.6
|
46.1
|
1.0
|
C3
|
C:MLB502
|
3.6
|
52.7
|
1.0
|
C4
|
C:MLB502
|
3.6
|
57.7
|
1.0
|
OD1
|
C:ASP260
|
3.6
|
61.0
|
1.0
|
CG
|
C:ASN301
|
3.7
|
48.4
|
1.0
|
N
|
C:GLY303
|
3.8
|
55.3
|
1.0
|
C
|
C:GLY304
|
4.2
|
53.3
|
1.0
|
C2
|
C:MLB502
|
4.2
|
52.7
|
1.0
|
N
|
C:PRO305
|
4.2
|
59.2
|
1.0
|
N
|
C:GLY302
|
4.3
|
47.7
|
1.0
|
CA
|
C:GLY303
|
4.3
|
54.0
|
1.0
|
O
|
C:GLY304
|
4.3
|
65.7
|
1.0
|
ND2
|
C:ASN301
|
4.4
|
49.6
|
1.0
|
C
|
C:ASP259
|
4.4
|
54.7
|
1.0
|
N
|
C:ALA306
|
4.4
|
47.9
|
1.0
|
N
|
C:GLY304
|
4.4
|
52.6
|
1.0
|
CA
|
C:ALA306
|
4.4
|
54.9
|
1.0
|
CB
|
C:ASP260
|
4.4
|
44.5
|
1.0
|
O
|
C:ASP259
|
4.5
|
62.7
|
1.0
|
N
|
C:ASP260
|
4.5
|
52.5
|
1.0
|
CA
|
C:PRO305
|
4.5
|
59.1
|
1.0
|
CA
|
C:GLY304
|
4.6
|
52.6
|
1.0
|
CB
|
C:ASP259
|
4.6
|
54.2
|
1.0
|
CB
|
C:ASN301
|
4.7
|
47.4
|
1.0
|
CA
|
C:ASN301
|
4.7
|
46.6
|
1.0
|
C
|
C:GLY302
|
4.8
|
55.0
|
1.0
|
CB
|
C:ALA306
|
4.8
|
57.2
|
1.0
|
CA
|
C:ASP260
|
4.9
|
43.4
|
1.0
|
C
|
C:ASN301
|
4.9
|
47.8
|
1.0
|
O2
|
C:MLB502
|
4.9
|
56.5
|
1.0
|
CD
|
C:PRO305
|
4.9
|
51.4
|
1.0
|
CA
|
C:GLY302
|
4.9
|
48.8
|
1.0
|
CA
|
C:ASP259
|
5.0
|
43.0
|
1.0
|
|
Calcium binding site 7 out
of 12 in 6t1d
Go back to
Calcium Binding Sites List in 6t1d
Calcium binding site 7 out
of 12 in the Pleurotus Ostreatus Lectin (Pol), Compelx with Melibiose
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 7 of Pleurotus Ostreatus Lectin (Pol), Compelx with Melibiose within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Ca401
b:76.5
occ:1.00
|
OG
|
D:SER143
|
2.4
|
80.8
|
1.0
|
OD1
|
D:ASP97
|
2.4
|
91.3
|
1.0
|
OD1
|
D:ASP98
|
2.5
|
87.8
|
1.0
|
O
|
D:PRO144
|
2.5
|
66.0
|
1.0
|
OD1
|
D:ASN138
|
2.5
|
69.3
|
1.0
|
O4
|
D:MLB501
|
2.8
|
72.4
|
1.0
|
O3
|
D:MLB501
|
2.9
|
56.6
|
1.0
|
C4
|
D:MLB501
|
3.2
|
55.4
|
1.0
|
CG
|
D:ASP97
|
3.2
|
84.0
|
1.0
|
OD2
|
D:ASP97
|
3.4
|
89.5
|
1.0
|
CG
|
D:ASP98
|
3.4
|
82.7
|
1.0
|
CB
|
D:SER143
|
3.4
|
80.9
|
1.0
|
C3
|
D:MLB501
|
3.6
|
50.0
|
1.0
|
OD2
|
D:ASP98
|
3.6
|
85.8
|
1.0
|
CG
|
D:ASN138
|
3.7
|
67.8
|
1.0
|
C
|
D:PRO144
|
3.7
|
77.4
|
1.0
|
C
|
D:SER143
|
4.1
|
97.9
|
1.0
|
N
|
D:PRO144
|
4.2
|
90.7
|
1.0
|
ND2
|
D:ASN138
|
4.3
|
71.8
|
1.0
|
O
|
D:SER143
|
4.4
|
0.6
|
1.0
|
CA
|
D:SER143
|
4.4
|
87.6
|
1.0
|
O
|
D:VAL140
|
4.4
|
74.6
|
1.0
|
CB
|
D:VAL140
|
4.4
|
50.5
|
1.0
|
CA
|
D:PRO144
|
4.6
|
85.8
|
1.0
|
N
|
D:VAL140
|
4.6
|
56.9
|
1.0
|
C5
|
D:MLB501
|
4.6
|
64.8
|
1.0
|
CB
|
D:ASP97
|
4.7
|
73.6
|
1.0
|
N
|
D:ALA145
|
4.7
|
77.5
|
1.0
|
CB
|
D:ASP98
|
4.7
|
73.5
|
1.0
|
C
|
D:ASP97
|
4.7
|
68.5
|
1.0
|
C2
|
D:MLB501
|
4.8
|
46.6
|
1.0
|
CA
|
D:ALA145
|
4.8
|
75.4
|
1.0
|
N
|
D:ASP98
|
4.9
|
63.6
|
1.0
|
O
|
D:ASP97
|
4.9
|
71.3
|
1.0
|
N
|
D:LEU139
|
4.9
|
60.8
|
1.0
|
C6
|
D:MLB501
|
4.9
|
86.3
|
1.0
|
CB
|
D:ASN138
|
4.9
|
65.0
|
1.0
|
CG2
|
D:VAL140
|
4.9
|
43.0
|
1.0
|
CD
|
D:PRO144
|
5.0
|
80.9
|
1.0
|
CA
|
D:VAL140
|
5.0
|
63.0
|
1.0
|
|
Calcium binding site 8 out
of 12 in 6t1d
Go back to
Calcium Binding Sites List in 6t1d
Calcium binding site 8 out
of 12 in the Pleurotus Ostreatus Lectin (Pol), Compelx with Melibiose
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 8 of Pleurotus Ostreatus Lectin (Pol), Compelx with Melibiose within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Ca402
b:40.5
occ:1.00
|
O
|
D:GLY303
|
2.3
|
56.4
|
1.0
|
O
|
D:PRO305
|
2.3
|
29.9
|
1.0
|
OD2
|
D:ASP260
|
2.3
|
45.5
|
1.0
|
OD1
|
D:ASP259
|
2.4
|
52.1
|
1.0
|
O3
|
D:MLB502
|
2.5
|
42.0
|
1.0
|
OD1
|
D:ASN301
|
2.5
|
58.5
|
1.0
|
O4
|
D:MLB502
|
2.6
|
60.5
|
1.0
|
CG
|
D:ASP260
|
3.1
|
42.9
|
1.0
|
C4
|
D:MLB502
|
3.2
|
44.8
|
1.0
|
CG
|
D:ASP259
|
3.3
|
43.0
|
1.0
|
OD1
|
D:ASP260
|
3.3
|
50.6
|
1.0
|
C
|
D:GLY303
|
3.4
|
42.8
|
1.0
|
C3
|
D:MLB502
|
3.4
|
40.2
|
1.0
|
C
|
D:PRO305
|
3.5
|
36.7
|
1.0
|
OD2
|
D:ASP259
|
3.5
|
41.4
|
1.0
|
CG
|
D:ASN301
|
3.7
|
53.8
|
1.0
|
N
|
D:GLY303
|
3.8
|
31.3
|
1.0
|
C
|
D:GLY304
|
4.1
|
55.9
|
1.0
|
N
|
D:PRO305
|
4.1
|
50.9
|
1.0
|
O
|
D:GLY304
|
4.2
|
57.1
|
1.0
|
CA
|
D:GLY303
|
4.2
|
31.9
|
1.0
|
C2
|
D:MLB502
|
4.3
|
35.6
|
1.0
|
N
|
D:GLY304
|
4.4
|
35.8
|
1.0
|
CB
|
D:ASP260
|
4.4
|
25.6
|
1.0
|
N
|
D:GLY302
|
4.4
|
35.0
|
1.0
|
CA
|
D:PRO305
|
4.4
|
44.1
|
1.0
|
ND2
|
D:ASN301
|
4.4
|
47.3
|
1.0
|
N
|
D:ALA306
|
4.4
|
34.8
|
1.0
|
CA
|
D:GLY304
|
4.5
|
45.9
|
1.0
|
C
|
D:ASP259
|
4.5
|
35.0
|
1.0
|
N
|
D:ASP260
|
4.6
|
37.0
|
1.0
|
CA
|
D:ALA306
|
4.6
|
33.4
|
1.0
|
CB
|
D:ASP259
|
4.6
|
30.2
|
1.0
|
CD
|
D:PRO305
|
4.6
|
38.6
|
1.0
|
O
|
D:ASP259
|
4.7
|
35.2
|
1.0
|
C5
|
D:MLB502
|
4.7
|
35.2
|
1.0
|
C
|
D:GLY302
|
4.7
|
43.1
|
1.0
|
CB
|
D:ASN301
|
4.8
|
46.9
|
1.0
|
CA
|
D:ASP260
|
4.8
|
33.7
|
1.0
|
CA
|
D:ASN301
|
4.9
|
47.7
|
1.0
|
CB
|
D:ALA306
|
5.0
|
21.8
|
1.0
|
CA
|
D:GLY302
|
5.0
|
39.2
|
1.0
|
|
Calcium binding site 9 out
of 12 in 6t1d
Go back to
Calcium Binding Sites List in 6t1d
Calcium binding site 9 out
of 12 in the Pleurotus Ostreatus Lectin (Pol), Compelx with Melibiose
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 9 of Pleurotus Ostreatus Lectin (Pol), Compelx with Melibiose within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Ca401
b:0.5
occ:1.00
|
OG
|
E:SER143
|
2.4
|
0.2
|
1.0
|
O
|
E:PRO144
|
2.5
|
69.7
|
1.0
|
OD1
|
E:ASN138
|
2.5
|
79.3
|
1.0
|
OD1
|
E:ASP97
|
2.5
|
0.8
|
1.0
|
OD2
|
E:ASP98
|
2.5
|
83.4
|
1.0
|
O3
|
E:MLB501
|
2.7
|
67.5
|
1.0
|
O4
|
E:MLB501
|
3.0
|
81.6
|
1.0
|
CB
|
E:SER143
|
3.3
|
0.9
|
1.0
|
CG
|
E:ASP97
|
3.3
|
97.8
|
1.0
|
CG
|
E:ASP98
|
3.3
|
85.0
|
1.0
|
C4
|
E:MLB501
|
3.5
|
75.9
|
1.0
|
OD2
|
E:ASP97
|
3.5
|
95.8
|
1.0
|
OD1
|
E:ASP98
|
3.5
|
82.9
|
1.0
|
CG
|
E:ASN138
|
3.6
|
76.9
|
1.0
|
C
|
E:PRO144
|
3.7
|
94.8
|
1.0
|
C3
|
E:MLB501
|
3.7
|
73.8
|
1.0
|
ND2
|
E:ASN138
|
4.0
|
83.0
|
1.0
|
C
|
E:SER143
|
4.1
|
0.4
|
1.0
|
N
|
E:PRO144
|
4.1
|
0.4
|
1.0
|
CA
|
E:SER143
|
4.3
|
0.9
|
1.0
|
CB
|
E:VAL140
|
4.4
|
76.8
|
1.0
|
O
|
E:SER143
|
4.5
|
0.6
|
1.0
|
CA
|
E:PRO144
|
4.5
|
0.5
|
1.0
|
O
|
E:VAL140
|
4.5
|
95.7
|
1.0
|
N
|
E:ALA145
|
4.7
|
0.0
|
1.0
|
N
|
E:VAL140
|
4.7
|
88.7
|
1.0
|
CB
|
E:ASP98
|
4.7
|
82.0
|
1.0
|
CB
|
E:ASP97
|
4.7
|
88.9
|
1.0
|
C
|
E:ASP97
|
4.7
|
64.0
|
1.0
|
CD
|
E:PRO144
|
4.8
|
0.1
|
1.0
|
CA
|
E:ALA145
|
4.8
|
0.0
|
1.0
|
C2
|
E:MLB501
|
4.8
|
69.5
|
1.0
|
O
|
E:ASP97
|
4.8
|
54.8
|
1.0
|
CB
|
E:ASN138
|
4.8
|
70.2
|
1.0
|
N
|
E:ASP98
|
4.9
|
72.6
|
1.0
|
CG2
|
E:VAL140
|
4.9
|
75.2
|
1.0
|
C5
|
E:MLB501
|
4.9
|
75.6
|
1.0
|
N
|
E:LEU139
|
4.9
|
95.6
|
1.0
|
CA
|
E:VAL140
|
5.0
|
81.3
|
1.0
|
|
Calcium binding site 10 out
of 12 in 6t1d
Go back to
Calcium Binding Sites List in 6t1d
Calcium binding site 10 out
of 12 in the Pleurotus Ostreatus Lectin (Pol), Compelx with Melibiose
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 10 of Pleurotus Ostreatus Lectin (Pol), Compelx with Melibiose within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Ca402
b:44.4
occ:1.00
|
O
|
E:PRO305
|
2.1
|
40.6
|
1.0
|
O
|
E:GLY303
|
2.3
|
51.1
|
1.0
|
O3
|
E:MLB502
|
2.3
|
50.0
|
1.0
|
OD1
|
E:ASN301
|
2.4
|
56.3
|
1.0
|
O4
|
E:MLB502
|
2.4
|
49.3
|
1.0
|
OD1
|
E:ASP259
|
2.4
|
40.9
|
1.0
|
OD2
|
E:ASP260
|
2.4
|
46.2
|
1.0
|
CG
|
E:ASP260
|
3.2
|
47.7
|
1.0
|
CG
|
E:ASP259
|
3.2
|
44.4
|
1.0
|
C4
|
E:MLB502
|
3.3
|
52.6
|
1.0
|
C3
|
E:MLB502
|
3.3
|
52.8
|
1.0
|
OD2
|
E:ASP259
|
3.3
|
42.0
|
1.0
|
C
|
E:PRO305
|
3.3
|
41.2
|
1.0
|
OD1
|
E:ASP260
|
3.4
|
57.6
|
1.0
|
C
|
E:GLY303
|
3.4
|
47.8
|
1.0
|
CG
|
E:ASN301
|
3.6
|
48.9
|
1.0
|
C2
|
E:MLB502
|
3.8
|
58.9
|
1.0
|
N
|
E:PRO305
|
3.9
|
30.7
|
1.0
|
N
|
E:GLY303
|
4.0
|
47.7
|
1.0
|
C
|
E:GLY304
|
4.0
|
38.9
|
1.0
|
CA
|
E:PRO305
|
4.2
|
32.0
|
1.0
|
O
|
E:GLY304
|
4.2
|
47.6
|
1.0
|
ND2
|
E:ASN301
|
4.2
|
45.5
|
1.0
|
N
|
E:ALA306
|
4.3
|
43.3
|
1.0
|
CA
|
E:GLY303
|
4.3
|
54.9
|
1.0
|
N
|
E:GLY304
|
4.3
|
37.1
|
1.0
|
CA
|
E:GLY304
|
4.4
|
37.1
|
1.0
|
CA
|
E:ALA306
|
4.4
|
29.2
|
1.0
|
CD
|
E:PRO305
|
4.5
|
28.7
|
1.0
|
CB
|
E:ASP260
|
4.5
|
34.2
|
1.0
|
N
|
E:GLY302
|
4.5
|
37.0
|
1.0
|
O2
|
E:MLB502
|
4.6
|
58.2
|
1.0
|
CB
|
E:ASP259
|
4.6
|
41.0
|
1.0
|
C5
|
E:MLB502
|
4.6
|
45.4
|
1.0
|
C
|
E:ASP259
|
4.6
|
31.5
|
1.0
|
N
|
E:ASP260
|
4.7
|
31.8
|
1.0
|
CB
|
E:ASN301
|
4.7
|
48.1
|
1.0
|
O
|
E:ASP259
|
4.8
|
44.4
|
1.0
|
CB
|
E:ALA306
|
4.9
|
28.4
|
1.0
|
CA
|
E:ASN301
|
4.9
|
38.5
|
1.0
|
CB
|
E:PRO305
|
4.9
|
28.2
|
1.0
|
CA
|
E:ASP260
|
4.9
|
32.8
|
1.0
|
C
|
E:GLY302
|
4.9
|
39.3
|
1.0
|
|
Reference:
M.Perduca,
L.Destefanis,
M.Bovi,
M.Galliano,
F.Munari,
M.Assfalg,
F.Ferrari,
H.L.Monaco,
S.Capaldi.
Structure and Properties of the Oyster Mushroom (Pleurotus Ostreatus) Lectin (Pol). Glycobiology 2020.
ISSN: ESSN 1460-2423
PubMed: 31985778
DOI: 10.1093/GLYCOB/CWAA006
Page generated: Tue Jul 16 15:05:53 2024
|