Calcium in PDB 6t72: Structure of the Rsaa N-Terminal Domain Bound to Lps

The binding sites of Calcium atom in the Structure of the Rsaa N-Terminal Domain Bound to Lps (pdb code 6t72). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 3 binding sites of Calcium where determined in the Structure of the Rsaa N-Terminal Domain Bound to Lps, PDB code: 6t72:
Jump to Calcium binding site number: 1; 2; 3;

Calcium binding site 1 out of 3 in the Structure of the Rsaa N-Terminal Domain Bound to Lps


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Structure of the Rsaa N-Terminal Domain Bound to Lps within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca301 b:66.2 occ:1.00 O A:SER84 2.3 65.5 1.0 OD1 A:ASP90 2.7 53.1 1.0 OD2 A:ASP93 2.9 60.8 1.0 O A:ASN87 2.9 65.0 1.0 C A:SER84 3.5 64.8 1.0 O A:THR88 3.8 62.0 1.0 CG A:ASP93 3.9 59.8 1.0 CG A:ASP90 3.9 52.8 1.0 C A:ASN87 4.1 65.2 1.0 C A:THR88 4.3 62.2 1.0 N A:SER84 4.3 58.1 1.0 N A:THR85 4.5 68.5 1.0 CA A:THR88 4.5 64.9 1.0 CA A:SER84 4.5 61.6 1.0 CA A:THR85 4.5 71.5 1.0 CB A:ASP93 4.6 58.0 1.0 O A:THR85 4.7 72.2 1.0 C A:THR85 4.7 72.4 1.0 N A:THR88 4.7 65.2 1.0 OD2 A:ASP90 4.7 53.6 1.0 OD1 A:ASP93 4.7 60.3 1.0 CB A:ASP90 4.8 51.1 1.0

Calcium binding site 2 out of 3 in the Structure of the Rsaa N-Terminal Domain Bound to Lps


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Structure of the Rsaa N-Terminal Domain Bound to Lps within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca302 b:34.3 occ:1.00 O A:LEU17 2.9 37.7 1.0 O A:ASP83 3.0 56.4 1.0 OD2 A:ASP83 3.1 63.2 1.0 OD1 A:ASP79 3.2 49.6 1.0 OD2 A:ASP79 3.5 50.1 1.0 CG A:ASP79 3.7 49.1 1.0 CG A:ASP83 4.0 62.8 1.0 C A:LEU17 4.1 37.5 1.0 C A:ASP83 4.1 56.4 1.0 CA A:GLY18 4.3 42.5 1.0 CB A:ASP83 4.4 59.7 1.0 N A:GLY18 4.7 39.7 1.0 CA A:SER84 4.8 61.6 1.0 N A:SER84 4.9 58.1 1.0 C A:GLY18 4.9 44.5 1.0 CA A:ASP83 4.9 55.5 1.0

Calcium binding site 3 out of 3 in the Structure of the Rsaa N-Terminal Domain Bound to Lps


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Structure of the Rsaa N-Terminal Domain Bound to Lps within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca303 b:74.1 occ:1.00 O A:ALA227 2.4 69.3 1.0 OD1 A:ASP222 2.5 40.0 1.0 OD1 A:ASP225 2.8 66.1 1.0 OD2 A:ASP225 3.0 65.8 1.0 O A:ASP222 3.0 37.3 1.0 CG A:ASP225 3.3 65.6 1.0 C A:ALA227 3.6 70.3 1.0 CG A:ASP222 3.7 39.4 1.0 C A:ASP222 4.0 37.2 1.0 N A:SER229 4.3 74.5 1.0 CA A:ASP222 4.4 37.0 1.0 CA A:ALA227 4.5 70.5 1.0 N A:LEU228 4.5 71.0 1.0 OD2 A:ASP222 4.5 40.0 1.0 CA A:LEU228 4.6 71.8 1.0 N A:ALA227 4.6 69.5 1.0 CB A:ALA227 4.6 72.2 1.0 CB A:SER229 4.6 75.7 1.0 CB A:ASP222 4.6 38.3 1.0 C A:LEU228 4.8 73.6 1.0 CB A:ASP225 4.8 63.6 1.0 CA A:SER229 4.9 76.0 1.0

A.Von Kugelgen, H.Tang, G.G.Hardy, D.Kureisaite-Ciziene, Y.V.Brun, P.J.Stansfeld, C.V.Robinson, T.A.M.Bharat. Insitu Structure of An Intact Lipopolysaccharide-Bound Bacterial Surface Layer. Cell 2019.
ISSN: ISSN 1097-4172
PubMed: 31883796
DOI: 10.1016/J.CELL.2019.12.006