Atomistry » Calcium » PDB 6toy-6tz7 » 6trd
Atomistry »
  Calcium »
    PDB 6toy-6tz7 »
      6trd »

Calcium in PDB 6trd: Cryo- Em Structure of the Thermosynechococcus Elongatus Photosystem I in the Presence of Cytochrome C6

Enzymatic activity of Cryo- Em Structure of the Thermosynechococcus Elongatus Photosystem I in the Presence of Cytochrome C6

All present enzymatic activity of Cryo- Em Structure of the Thermosynechococcus Elongatus Photosystem I in the Presence of Cytochrome C6:
1.97.1.12;

Other elements in 6trd:

The structure of Cryo- Em Structure of the Thermosynechococcus Elongatus Photosystem I in the Presence of Cytochrome C6 also contains other interesting chemical elements:

Magnesium (Mg) 291 atoms
Iron (Fe) 36 atoms

Calcium Binding Sites:

The binding sites of Calcium atom in the Cryo- Em Structure of the Thermosynechococcus Elongatus Photosystem I in the Presence of Cytochrome C6 (pdb code 6trd). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 6 binding sites of Calcium where determined in the Cryo- Em Structure of the Thermosynechococcus Elongatus Photosystem I in the Presence of Cytochrome C6, PDB code: 6trd:
Jump to Calcium binding site number: 1; 2; 3; 4; 5; 6;

Calcium binding site 1 out of 6 in 6trd

Go back to Calcium Binding Sites List in 6trd
Calcium binding site 1 out of 6 in the Cryo- Em Structure of the Thermosynechococcus Elongatus Photosystem I in the Presence of Cytochrome C6


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Cryo- Em Structure of the Thermosynechococcus Elongatus Photosystem I in the Presence of Cytochrome C6 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca801

b:9.5
occ:1.00
 OE2 B:GLU200 2.4 9.1 1.0
OE1 B:GLU200 2.6 9.1 1.0
CD B:GLU200 2.7 9.1 1.0
CD2 B:HIS205 2.8 10.1 1.0
NE2 B:HIS205 3.3 10.1 1.0
OD2 B:ASP133 3.7 8.2 1.0
CG B:GLU200 4.0 9.1 1.0
CG B:HIS205 4.0 10.1 1.0
N B:VAL206 4.2 9.8 1.0
N B:GLY207 4.2 9.9 1.0
O1D B:CLA814 4.3 9.6 1.0
CG B:ASP133 4.5 8.2 1.0
CE1 B:HIS205 4.5 10.1 1.0
OD1 B:ASP133 4.6 8.2 1.0
CA B:HIS205 4.6 10.1 1.0
CA B:GLY207 4.7 9.9 1.0
CB B:HIS205 4.8 10.1 1.0
O B:GLY127 4.8 7.3 1.0
ND1 B:HIS205 4.9 10.1 1.0
C B:HIS205 4.9 10.1 1.0

Calcium binding site 2 out of 6 in 6trd

Go back to Calcium Binding Sites List in 6trd
Calcium binding site 2 out of 6 in the Cryo- Em Structure of the Thermosynechococcus Elongatus Photosystem I in the Presence of Cytochrome C6


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Cryo- Em Structure of the Thermosynechococcus Elongatus Photosystem I in the Presence of Cytochrome C6 within 5.0Å range:
probe atom residue distance (Å) B Occ
L:Ca202

b:8.8
occ:1.00
 O L:PRO67 2.2 1.5 1.0
O l:PHE153 2.7 4.6 1.0
C L:PRO67 3.4 1.5 1.0
CB L:ASP70 3.5 5.1 1.0
OD2 L:ASP70 3.7 5.1 1.0
C l:PHE153 3.9 4.6 1.0
CG L:ASP70 4.1 5.1 1.0
N L:ASP70 4.2 5.1 1.0
CA L:PRO67 4.2 1.5 1.0
N L:LEU68 4.3 2.5 1.0
CA L:ASP70 4.5 5.1 1.0
CA L:LEU68 4.5 2.5 1.0
CA l:ASN154 4.5 2.6 1.0
N l:ASN154 4.7 2.6 1.0
C L:LEU68 4.7 2.5 1.0
N L:ARG69 4.7 1.4 1.0
OD1 A:ASP473 4.8 1.1 1.0
NH1 L:ARG69 5.0 1.4 1.0
CA l:PHE153 5.0 4.6 1.0
CB L:PRO67 5.0 1.5 1.0

Calcium binding site 3 out of 6 in 6trd

Go back to Calcium Binding Sites List in 6trd
Calcium binding site 3 out of 6 in the Cryo- Em Structure of the Thermosynechococcus Elongatus Photosystem I in the Presence of Cytochrome C6


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Cryo- Em Structure of the Thermosynechococcus Elongatus Photosystem I in the Presence of Cytochrome C6 within 5.0Å range:
probe atom residue distance (Å) B Occ
b:Ca801

b:9.7
occ:1.00
 OE2 b:GLU200 2.4 5.7 1.0
OE1 b:GLU200 2.6 5.7 1.0
CD b:GLU200 2.7 5.7 1.0
CD2 b:HIS205 2.8 7.1 1.0
NE2 b:HIS205 3.3 7.1 1.0
OD2 b:ASP133 3.7 4.7 1.0
CG b:GLU200 4.0 5.7 1.0
CG b:HIS205 4.0 7.1 1.0
N b:VAL206 4.2 7.1 1.0
N b:GLY207 4.2 6.2 1.0
O1D b:CLA815 4.3 5.5 1.0
CG b:ASP133 4.5 4.7 1.0
CE1 b:HIS205 4.5 7.1 1.0
OD1 b:ASP133 4.6 4.7 1.0
CA b:HIS205 4.6 7.1 1.0
CA b:GLY207 4.7 6.2 1.0
CB b:HIS205 4.8 7.1 1.0
O b:GLY127 4.8 4.4 1.0
ND1 b:HIS205 4.9 7.1 1.0
C b:HIS205 4.9 7.1 1.0

Calcium binding site 4 out of 6 in 6trd

Go back to Calcium Binding Sites List in 6trd
Calcium binding site 4 out of 6 in the Cryo- Em Structure of the Thermosynechococcus Elongatus Photosystem I in the Presence of Cytochrome C6


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of Cryo- Em Structure of the Thermosynechococcus Elongatus Photosystem I in the Presence of Cytochrome C6 within 5.0Å range:
probe atom residue distance (Å) B Occ
l:Ca203

b:7.7
occ:1.00
 O l:PRO67 2.2 1.2 1.0
O 0:PHE153 2.6 2.8 1.0
C l:PRO67 3.4 1.2 1.0
CB l:ASP70 3.5 4.8 1.0
OD2 l:ASP70 3.7 4.8 1.0
C 0:PHE153 3.8 2.8 1.0
CG l:ASP70 4.1 4.8 1.0
N l:ASP70 4.2 4.8 1.0
CA l:PRO67 4.2 1.2 1.0
N l:LEU68 4.3 1.8 1.0
CA 0:ASN154 4.4 1.7 1.0
CA l:ASP70 4.5 4.8 1.0
CA l:LEU68 4.5 1.8 1.0
N 0:ASN154 4.5 1.7 1.0
C l:LEU68 4.7 1.8 1.0
N l:ARG69 4.7 1.5 1.0
OD1 a:ASP473 4.7 1.5 1.0
CA 0:PHE153 4.8 2.8 1.0
NH1 l:ARG69 5.0 1.5 1.0
CB l:PRO67 5.0 1.2 1.0

Calcium binding site 5 out of 6 in 6trd

Go back to Calcium Binding Sites List in 6trd
Calcium binding site 5 out of 6 in the Cryo- Em Structure of the Thermosynechococcus Elongatus Photosystem I in the Presence of Cytochrome C6


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 5 of Cryo- Em Structure of the Thermosynechococcus Elongatus Photosystem I in the Presence of Cytochrome C6 within 5.0Å range:
probe atom residue distance (Å) B Occ
2:Ca801

b:7.7
occ:1.00
 OE2 2:GLU200 2.4 7.9 1.0
OE1 2:GLU200 2.6 7.9 1.0
CD 2:GLU200 2.7 7.9 1.0
CD2 2:HIS205 2.8 7.4 1.0
NE2 2:HIS205 3.3 7.4 1.0
OD2 2:ASP133 3.7 6.2 1.0
CG 2:GLU200 4.0 7.9 1.0
CG 2:HIS205 4.0 7.4 1.0
N 2:VAL206 4.2 8.6 1.0
N 2:GLY207 4.2 8.7 1.0
O1D 2:CLA815 4.3 10.0 1.0
CG 2:ASP133 4.5 6.2 1.0
CE1 2:HIS205 4.5 7.4 1.0
OD1 2:ASP133 4.6 6.2 1.0
CA 2:HIS205 4.6 7.4 1.0
CA 2:GLY207 4.7 8.7 1.0
CB 2:HIS205 4.8 7.4 1.0
O 2:GLY127 4.8 5.3 1.0
ND1 2:HIS205 4.9 7.4 1.0
C 2:HIS205 4.9 7.4 1.0

Calcium binding site 6 out of 6 in 6trd

Go back to Calcium Binding Sites List in 6trd
Calcium binding site 6 out of 6 in the Cryo- Em Structure of the Thermosynechococcus Elongatus Photosystem I in the Presence of Cytochrome C6


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 6 of Cryo- Em Structure of the Thermosynechococcus Elongatus Photosystem I in the Presence of Cytochrome C6 within 5.0Å range:
probe atom residue distance (Å) B Occ
0:Ca204

b:6.7
occ:1.00
 O 0:PRO67 2.2 1.4 1.0
O L:PHE153 2.9 2.4 1.0
C 0:PRO67 3.4 1.4 1.0
CB 0:ASP70 3.5 3.9 1.0
OD2 0:ASP70 3.7 3.9 1.0
CG 0:ASP70 4.1 3.9 1.0
C L:PHE153 4.1 2.4 1.0
N 0:ASP70 4.2 3.9 1.0
CA 0:PRO67 4.2 1.4 1.0
N 0:LEU68 4.3 1.8 1.0
CA 0:ASP70 4.5 3.9 1.0
CA 0:LEU68 4.5 1.8 1.0
C 0:LEU68 4.7 1.8 1.0
N 0:ARG69 4.7 1.6 1.0
CA L:ASN154 4.8 1.7 1.0
OD1 1:ASP473 4.9 1.5 1.0
N L:ASN154 4.9 1.7 1.0
NH1 0:ARG69 5.0 1.6 1.0
CB 0:PRO67 5.0 1.4 1.0

Reference:

A.Koelsch, C.Radon, M.Golub, A.Baumert, J.Burger, T.Miehlke, F.Lisdat, A.Feoktystov, J.Pieper, A.Zouni, P.Wendler. Current Limits of Structural Biology: the Transient Interaction Between Cytochrome C6 and Photosystem I Curr.Opin.Struct.Biol. V. 2 171 2020.
ISSN: ISSN 0959-440X
DOI: 10.1016/J.CRSTBI.2020.08.003
Page generated: Tue Jul 16 15:27:23 2024

Last articles

Zn in 9J0N
Zn in 9J0O
Zn in 9J0P
Zn in 9FJX
Zn in 9EKB
Zn in 9C0F
Zn in 9CAH
Zn in 9CH0
Zn in 9CH3
Zn in 9CH1
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy