Calcium in PDB 6ts2: Truncated Version of Chaetomium Thermophilum Udp-Glucose Glucosyl Transferase (Uggt) Lacking Domain TRXL2 (417-650).

The structure of Truncated Version of Chaetomium Thermophilum Udp-Glucose Glucosyl Transferase (Uggt) Lacking Domain TRXL2 (417-650)., PDB code: 6ts2 was solved by P.Roversi, N.Zitzmann, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	140.60 / 5.74
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	151.145, 191.014, 158.807, 90.00, 117.70, 90.00
R / Rfree (%)	17.4 / 24.9

The binding sites of Calcium atom in the Truncated Version of Chaetomium Thermophilum Udp-Glucose Glucosyl Transferase (Uggt) Lacking Domain TRXL2 (417-650). (pdb code 6ts2). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 4 binding sites of Calcium where determined in the Truncated Version of Chaetomium Thermophilum Udp-Glucose Glucosyl Transferase (Uggt) Lacking Domain TRXL2 (417-650)., PDB code: 6ts2:
Jump to Calcium binding site number: 1; 2; 3; 4;

Calcium binding site 1 out of 4 in the Truncated Version of Chaetomium Thermophilum Udp-Glucose Glucosyl Transferase (Uggt) Lacking Domain TRXL2 (417-650).


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Truncated Version of Chaetomium Thermophilum Udp-Glucose Glucosyl Transferase (Uggt) Lacking Domain TRXL2 (417-650). within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca1604 b:0.3 occ:0.46 OD1 A:ASP1435 2.6 0.8 1.0 OD2 A:ASP1304 2.7 0.0 1.0 OD1 A:ASP1304 2.7 0.1 1.0 CG A:ASP1304 2.8 0.3 1.0 CG A:ASP1302 2.9 91.5 1.0 OD2 A:ASP1302 2.9 0.1 1.0 O A:ASP1304 2.9 0.5 1.0 OD2 A:ASP1435 2.9 0.1 1.0 O A:ASP1302 2.9 85.3 1.0 CG A:ASP1435 2.9 0.4 1.0 OD1 A:ASP1302 3.0 92.1 1.0 O A:ASP1435 3.0 0.6 1.0 CB A:ASP1302 3.6 78.5 1.0 C A:ASP1304 3.8 98.3 1.0 C A:ASP1302 3.9 83.0 1.0 C A:ASP1435 4.0 0.2 1.0 CB A:ASP1304 4.1 95.6 1.0 N A:ASP1304 4.2 88.6 1.0 CB A:ASP1435 4.2 0.4 1.0 CA A:ASP1304 4.3 92.8 1.0 CA A:ASP1435 4.3 0.5 1.0 CG A:GLN1305 4.3 0.6 1.0 CA A:ASP1302 4.4 75.8 1.0 N A:GLN1305 4.9 92.8 1.0 N A:ALA1303 5.0 79.7 1.0

Calcium binding site 2 out of 4 in the Truncated Version of Chaetomium Thermophilum Udp-Glucose Glucosyl Transferase (Uggt) Lacking Domain TRXL2 (417-650).


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Truncated Version of Chaetomium Thermophilum Udp-Glucose Glucosyl Transferase (Uggt) Lacking Domain TRXL2 (417-650). within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca1604 b:0.8 occ:0.46 OD1 B:ASP1304 2.5 0.4 1.0 OD1 B:ASP1435 2.5 0.7 1.0 OD2 B:ASP1435 2.5 97.8 1.0 CG B:ASP1304 2.6 94.7 1.0 OD2 B:ASP1304 2.6 95.0 1.0 CG B:ASP1302 2.7 84.4 1.0 OD2 B:ASP1302 2.7 92.8 1.0 CG B:ASP1435 2.7 98.3 1.0 OD1 B:ASP1302 2.7 86.2 1.0 O B:ASP1304 2.8 87.8 1.0 O B:ASP1302 2.8 76.0 1.0 O B:ASP1435 3.0 97.3 1.0 CB B:ASP1302 3.6 69.8 1.0 C B:ASP1304 3.7 85.9 1.0 C B:ASP1302 3.7 74.7 1.0 CB B:ASP1304 3.8 84.4 1.0 N B:ASP1304 4.0 79.4 1.0 C B:ASP1435 4.0 95.8 1.0 OD1 B:ASN1438 4.0 0.1 1.0 CB B:ASP1435 4.0 87.1 1.0 CA B:ASP1304 4.1 81.9 1.0 CA B:ASP1302 4.2 67.3 1.0 CA B:ASP1435 4.2 87.7 1.0 CG B:GLN1305 4.5 87.1 1.0 O B:LEU1436 4.6 0.6 1.0 NZ B:LYS1446 4.7 0.2 1.0 N B:ASP1302 4.8 66.1 1.0 N B:ALA1303 4.8 72.3 1.0 N B:GLN1305 4.8 80.5 1.0 C B:ALA1303 5.0 82.3 1.0 CG B:ASN1438 5.0 0.8 1.0

Calcium binding site 3 out of 4 in the Truncated Version of Chaetomium Thermophilum Udp-Glucose Glucosyl Transferase (Uggt) Lacking Domain TRXL2 (417-650).


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Truncated Version of Chaetomium Thermophilum Udp-Glucose Glucosyl Transferase (Uggt) Lacking Domain TRXL2 (417-650). within 5.0Å range: probe atom residue distance (Å) B Occ C:Ca1608 b:0.1 occ:0.46 OD1 C:ASP1435 2.6 0.8 1.0 OD2 C:ASP1304 2.7 1.0 1.0 OD1 C:ASP1304 2.7 0.3 1.0 CG C:ASP1302 2.9 0.4 1.0 CG C:ASP1304 2.9 0.7 1.0 OD2 C:ASP1435 2.9 0.2 1.0 OD2 C:ASP1302 2.9 0.4 1.0 O C:ASP1302 2.9 0.2 1.0 O C:ASP1304 2.9 0.6 1.0 CG C:ASP1435 2.9 0.3 1.0 OD1 C:ASP1302 3.0 0.1 1.0 O C:ASP1435 3.0 0.8 1.0 CB C:ASP1302 3.6 0.5 1.0 C C:ASP1304 3.8 0.1 1.0 C C:ASP1302 3.9 0.9 1.0 C C:ASP1435 4.0 0.3 1.0 CB C:ASP1304 4.1 0.4 1.0 CB C:ASP1435 4.2 0.8 1.0 N C:ASP1304 4.2 0.9 1.0 CA C:ASP1435 4.3 1.0 1.0 CA C:ASP1304 4.3 0.0 1.0 CG C:GLN1305 4.3 0.2 1.0 CA C:ASP1302 4.4 0.8 1.0 N C:GLN1305 4.9 0.0 1.0

Calcium binding site 4 out of 4 in the Truncated Version of Chaetomium Thermophilum Udp-Glucose Glucosyl Transferase (Uggt) Lacking Domain TRXL2 (417-650).


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of Truncated Version of Chaetomium Thermophilum Udp-Glucose Glucosyl Transferase (Uggt) Lacking Domain TRXL2 (417-650). within 5.0Å range: probe atom residue distance (Å) B Occ D:Ca1607 b:0.8 occ:0.46 OD1 D:ASP1435 2.6 1.0 1.0 OD2 D:ASP1304 2.7 0.9 1.0 OD1 D:ASP1304 2.7 0.7 1.0 CG D:ASP1304 2.9 0.3 1.0 CG D:ASP1302 2.9 0.8 1.0 OD2 D:ASP1302 2.9 0.8 1.0 OD2 D:ASP1435 2.9 0.6 1.0 O D:ASP1304 2.9 0.2 1.0 O D:ASP1302 2.9 0.6 1.0 CG D:ASP1435 2.9 0.4 1.0 OD1 D:ASP1302 3.0 0.2 1.0 O D:ASP1435 3.0 0.8 1.0 CB D:ASP1302 3.7 0.1 1.0 C D:ASP1304 3.9 0.1 1.0 C D:ASP1302 3.9 0.7 1.0 C D:ASP1435 4.0 0.9 1.0 CB D:ASP1304 4.1 0.5 1.0 CB D:ASP1435 4.2 0.9 1.0 N D:ASP1304 4.2 0.3 1.0 CA D:ASP1435 4.3 0.6 1.0 CA D:ASP1304 4.3 0.7 1.0 CG D:GLN1305 4.3 0.8 1.0 CA D:ASP1302 4.4 0.1 1.0 N D:GLN1305 4.9 0.7 1.0

P.Roversi, N.Zitzmann. Clamping, Bending, and Twisting Inter-Domain Motions in the Misfold-Recognising Portion of Udp-Glucose:Glycoprotein Glucosyl-Transferase Biorxiv 2019.
DOI: 10.1101/2019.12.25.888438