Calcium in PDB 6twu: MAGI1_2 Complexed with A Phosphomimetic 16E6 Peptide

The structure of MAGI1_2 Complexed with A Phosphomimetic 16E6 Peptide, PDB code: 6twu was solved by G.Gogl, A.Cousido-Siah, G.Trave, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	48.22 / 2.40
Space group	P 2 21 21
Cell size a, b, c (Å), α, β, γ (°)	61.160, 96.440, 197.710, 90.00, 90.00, 90.00
R / Rfree (%)	21.6 / 25.5

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 11;

Binding sites:

The binding sites of Calcium atom in the MAGI1_2 Complexed with A Phosphomimetic 16E6 Peptide (pdb code 6twu). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 11 binding sites of Calcium where determined in the MAGI1_2 Complexed with A Phosphomimetic 16E6 Peptide, PDB code: 6twu:
Jump to Calcium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Calcium binding site 1 out of 11 in the MAGI1_2 Complexed with A Phosphomimetic 16E6 Peptide


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of MAGI1_2 Complexed with A Phosphomimetic 16E6 Peptide within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca904 b:0.6 occ:1.00 O A:LYS627 2.9 95.7 1.0 OE2 A:GLU635 3.3 96.4 1.0 O A:LEU630 3.6 80.2 1.0 C A:LYS627 4.0 88.5 1.0 CD A:GLU635 4.1 84.1 1.0 OE1 A:GLU635 4.1 96.9 1.0 CG A:LYS627 4.4 0.6 1.0 CD A:LYS627 4.7 95.2 1.0 CA A:SER628 4.8 92.9 1.0 C A:LEU630 4.8 79.4 1.0 N A:SER628 4.8 92.2 1.0 CA A:LYS627 4.9 88.8 1.0

Calcium binding site 2 out of 11 in the MAGI1_2 Complexed with A Phosphomimetic 16E6 Peptide


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of MAGI1_2 Complexed with A Phosphomimetic 16E6 Peptide within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca905 b:0.1 occ:1.00 O A:GLY659 2.5 0.8 1.0 OD2 A:ASP701 2.8 0.6 1.0 O A:MET657 3.0 90.6 1.0 CG2 A:THR662 3.2 83.8 1.0 O A:LEU660 3.3 0.7 1.0 C A:MET657 3.4 79.9 1.0 C A:GLY659 3.5 0.5 1.0 O A:LYS658 3.5 0.6 1.0 C A:GLY661 3.5 0.1 1.0 C A:LEU660 3.6 0.3 1.0 N A:THR662 3.6 99.5 1.0 CG A:ASP701 3.6 99.5 1.0 O A:GLY661 3.6 0.6 1.0 CA A:THR662 3.6 88.4 1.0 CB A:THR662 3.7 92.8 1.0 CA A:MET657 3.8 78.8 1.0 C A:LYS658 3.9 96.7 1.0 N A:GLY661 4.0 0.0 1.0 CA A:LEU660 4.1 0.9 1.0 N A:LYS658 4.1 84.4 1.0 N A:LEU660 4.2 0.7 1.0 OD1 A:ASP701 4.2 0.7 1.0 CA A:GLY661 4.3 0.5 1.0 N A:GLY659 4.3 0.1 1.0 CB A:ASP701 4.4 86.7 1.0 CA A:GLY659 4.5 0.5 1.0 CB A:MET657 4.5 74.5 1.0 CA A:LYS658 4.6 96.1 1.0 O A:SER656 4.7 76.8 1.0 N A:MET657 4.9 76.9 1.0

Calcium binding site 3 out of 11 in the MAGI1_2 Complexed with A Phosphomimetic 16E6 Peptide


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of MAGI1_2 Complexed with A Phosphomimetic 16E6 Peptide within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca906 b:0.3 occ:1.00 O A:VAL590 2.5 93.7 1.0 O A:GLY589 2.6 84.4 1.0 C A:VAL590 3.7 86.5 1.0 C A:GLY589 3.7 90.4 1.0 CG A:GLU592 3.8 89.2 1.0 CD A:GLU592 4.4 0.8 1.0 CA A:VAL590 4.4 90.0 1.0 N A:VAL590 4.4 89.8 1.0 OE2 A:GLU592 4.4 0.4 1.0 CB A:VAL590 4.5 89.5 1.0 N A:GLU592 4.6 83.1 1.0 CA A:GLY589 4.7 88.9 1.0 N A:ASP591 4.7 89.8 1.0 CA A:ASP591 5.0 87.2 1.0 CB A:GLU592 5.0 78.9 1.0

Calcium binding site 4 out of 11 in the MAGI1_2 Complexed with A Phosphomimetic 16E6 Peptide


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of MAGI1_2 Complexed with A Phosphomimetic 16E6 Peptide within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca907 b:0.9 occ:1.00 OE1 A:GLU786 3.4 88.7 1.0 OE2 A:GLU786 3.6 74.5 1.0 N A:GLY746 3.9 73.9 1.0 CD A:GLU786 3.9 70.1 1.0 O A:ARG744 3.9 74.8 1.0 NZ A:LYS745 3.9 99.4 1.0 NZ A:LYS785 4.0 97.1 1.0 O A:GLY746 4.2 79.7 1.0 CD A:LYS745 4.3 0.1 1.0 CA A:LYS745 4.5 73.0 1.0 CE A:LYS745 4.5 0.9 1.0 CA A:GLY746 4.6 60.1 1.0 C A:LYS745 4.6 67.0 1.0 C A:GLY746 4.7 63.7 1.0 C A:ARG744 4.9 66.9 1.0 O A:LYS785 4.9 64.0 1.0 O A:GLY741 4.9 65.2 1.0

Calcium binding site 5 out of 11 in the MAGI1_2 Complexed with A Phosphomimetic 16E6 Peptide


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 5 of MAGI1_2 Complexed with A Phosphomimetic 16E6 Peptide within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca908 b:85.4 occ:1.00 O A:GLY819 2.4 82.5 1.0 O A:GLY821 2.4 97.2 1.0 O A:MET817 2.5 54.6 1.0 OD2 A:ASP861 2.6 94.0 1.0 OD1 A:ASP861 2.7 81.5 1.0 CG A:ASP861 3.0 82.0 1.0 C A:MET817 3.4 52.2 1.0 C A:GLY821 3.6 66.2 1.0 C A:GLY819 3.6 62.1 1.0 N A:GLY821 3.9 79.9 1.0 CA A:MET817 4.0 52.0 1.0 N A:GLY819 4.1 61.8 1.0 C A:LYS820 4.2 74.5 1.0 CA A:GLY821 4.2 61.4 1.0 C A:LYS818 4.4 57.7 1.0 OG1 A:THR822 4.4 66.1 1.0 CA A:GLY819 4.4 60.8 1.0 O A:HOH1008 4.5 60.2 1.0 N A:LYS818 4.5 55.0 1.0 CB A:ASP861 4.5 71.0 1.0 N A:LYS820 4.6 71.9 1.0 CB A:MET817 4.6 55.8 1.0 CA A:LYS820 4.6 62.5 1.0 N A:THR822 4.6 67.6 1.0 O A:LYS818 4.7 67.5 1.0 O A:LYS820 4.7 78.2 1.0 CA A:LYS818 4.9 62.2 1.0 CA A:THR822 4.9 61.1 1.0

Calcium binding site 6 out of 11 in the MAGI1_2 Complexed with A Phosphomimetic 16E6 Peptide


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 6 of MAGI1_2 Complexed with A Phosphomimetic 16E6 Peptide within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca904 b:99.6 occ:1.00 OG B:SER760 3.5 78.4 1.0 N B:SER760 4.0 68.4 1.0 CB B:HIS763 4.0 59.8 1.0 CB B:SER760 4.1 71.4 1.0 CG B:HIS763 4.2 60.9 1.0 ND1 B:HIS763 4.3 60.3 1.0 O B:HOH1002 4.7 72.7 1.0 CA B:SER760 4.7 67.9 1.0 N B:GLY722 4.7 0.0 1.0 O B:GLU720 4.8 0.9 1.0 CD B:ARG759 4.8 63.3 1.0 CD2 B:LEU729 4.8 64.2 1.0 CB B:ALA719 4.8 84.8 1.0 CD2 B:HIS763 4.9 62.4 1.0 CA B:ARG759 4.9 67.1 1.0 C B:ARG759 5.0 68.8 1.0

Calcium binding site 7 out of 11 in the MAGI1_2 Complexed with A Phosphomimetic 16E6 Peptide


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 7 of MAGI1_2 Complexed with A Phosphomimetic 16E6 Peptide within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca905 b:0.0 occ:1.00 O B:VAL590 2.9 92.0 1.0 O B:GLY589 3.0 98.0 1.0 OE2 B:GLU592 3.2 92.2 1.0 C B:GLY589 3.8 99.7 1.0 CG B:GLU592 3.9 94.4 1.0 CD B:GLU592 4.0 0.2 1.0 C B:VAL590 4.1 92.2 1.0 CA B:GLY589 4.6 87.3 1.0 N B:VAL590 4.6 95.3 1.0 CA B:VAL590 4.8 91.4 1.0 N B:GLU592 4.9 89.6 1.0

Calcium binding site 8 out of 11 in the MAGI1_2 Complexed with A Phosphomimetic 16E6 Peptide


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 8 of MAGI1_2 Complexed with A Phosphomimetic 16E6 Peptide within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca906 b:0.3 occ:1.00 OE2 B:GLU635 3.2 97.3 1.0 OE1 B:GLU635 3.5 0.2 1.0 CD B:GLU635 3.7 89.6 1.0 O B:LYS627 4.0 90.5 1.0 CG B:LYS627 4.4 91.1 1.0 O B:LEU630 4.8 83.5 1.0 CD B:LYS627 4.9 86.8 1.0

Calcium binding site 9 out of 11 in the MAGI1_2 Complexed with A Phosphomimetic 16E6 Peptide


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 9 of MAGI1_2 Complexed with A Phosphomimetic 16E6 Peptide within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca907 b:0.3 occ:1.00 OD2 B:ASP701 2.4 0.8 1.0 O B:GLY659 2.6 0.6 1.0 OD1 B:ASP701 2.8 0.6 1.0 CG B:ASP701 2.9 0.7 1.0 O B:MET657 3.3 88.4 1.0 C B:GLY659 3.5 0.6 1.0 O B:LEU660 4.2 0.6 1.0 N B:GLY659 4.2 0.2 1.0 C B:MET657 4.2 91.9 1.0 N B:LEU660 4.3 0.8 1.0 CA B:LEU660 4.3 0.0 1.0 CB B:ASP701 4.4 88.8 1.0 CA B:GLY659 4.4 0.5 1.0 C B:LEU660 4.6 0.8 1.0 C B:LYS658 4.8 0.8 1.0 CG2 B:THR662 4.9 91.0 1.0 CA B:MET657 4.9 86.3 1.0 CB B:MET657 4.9 77.3 1.0

Calcium binding site 10 out of 11 in the MAGI1_2 Complexed with A Phosphomimetic 16E6 Peptide


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 10 of MAGI1_2 Complexed with A Phosphomimetic 16E6 Peptide within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca908 b:0.0 occ:1.00 OE1 B:GLU786 3.4 96.7 1.0 N B:GLY746 3.5 85.9 1.0 O B:ARG744 3.6 99.8 1.0 OE2 B:GLU786 3.6 97.4 1.0 O B:HOH1006 3.6 70.6 1.0 CD B:LYS745 3.7 0.9 1.0 CD B:GLU786 3.8 86.2 1.0 CA B:LYS745 3.9 0.5 1.0 NZ B:LYS745 4.0 0.5 1.0 O B:GLY746 4.1 94.1 1.0 C B:LYS745 4.1 94.5 1.0 CE B:LYS745 4.2 0.8 1.0 CA B:GLY746 4.3 81.3 1.0 C B:GLY746 4.5 87.3 1.0 C B:ARG744 4.5 86.6 1.0 O B:GLY741 4.6 98.4 1.0 N B:LYS745 4.7 98.7 1.0 CG B:LYS745 4.8 0.0 1.0 CB B:LYS745 4.8 99.1 1.0

G.Gogl, A.Cousido-Siah, G.Trave. MAGI1_2 Complexed with A Phosphomimetic 16E6 Peptide To Be Published.