Calcium in PDB 6twx: MAGI1_2 Complexed with A Phosphorylated 16E6 Peptide

The structure of MAGI1_2 Complexed with A Phosphorylated 16E6 Peptide, PDB code: 6twx was solved by G.Gogl, A.Cousido-Siah, G.Trave, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	46.91 / 2.30
Space group	P 2 21 21
Cell size a, b, c (Å), α, β, γ (°)	61.470, 96.550, 198.520, 90.00, 90.00, 90.00
R / Rfree (%)	20.9 / 25.9

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 11;

Binding sites:

The binding sites of Calcium atom in the MAGI1_2 Complexed with A Phosphorylated 16E6 Peptide (pdb code 6twx). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 11 binding sites of Calcium where determined in the MAGI1_2 Complexed with A Phosphorylated 16E6 Peptide, PDB code: 6twx:
Jump to Calcium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Calcium binding site 1 out of 11 in the MAGI1_2 Complexed with A Phosphorylated 16E6 Peptide


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of MAGI1_2 Complexed with A Phosphorylated 16E6 Peptide within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca903 b:0.4 occ:1.00 OE1 A:GLU635 3.3 82.1 1.0 OE2 A:GLU635 3.4 81.0 1.0 O A:LYS627 3.5 76.1 1.0 CD A:GLU635 3.8 68.5 1.0 CD A:LYS627 3.8 79.6 1.0 CG A:LYS627 3.8 81.5 1.0 C A:LYS627 4.4 79.1 1.0 O A:LEU630 4.6 73.0 1.0 CE A:LYS627 4.7 84.1 1.0 CA A:LYS627 4.9 75.2 1.0 CB A:LYS627 5.0 79.2 1.0

Calcium binding site 2 out of 11 in the MAGI1_2 Complexed with A Phosphorylated 16E6 Peptide


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of MAGI1_2 Complexed with A Phosphorylated 16E6 Peptide within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca904 b:0.1 occ:1.00 O A:GLY659 2.4 0.6 1.0 OD2 A:ASP701 2.6 0.4 1.0 O A:MET657 3.0 75.1 1.0 CG2 A:THR662 3.1 78.3 1.0 O A:LEU660 3.3 0.9 1.0 C A:MET657 3.4 64.6 1.0 CG A:ASP701 3.4 0.3 1.0 C A:GLY659 3.4 0.3 1.0 O A:GLY661 3.5 0.6 1.0 C A:LEU660 3.6 0.0 1.0 C A:GLY661 3.6 0.5 1.0 CA A:MET657 3.8 69.0 1.0 N A:THR662 3.8 96.4 1.0 CB A:THR662 3.8 81.2 1.0 O A:LYS658 3.8 0.4 1.0 CA A:THR662 3.9 84.0 1.0 C A:LYS658 4.0 0.4 1.0 OD1 A:ASP701 4.1 0.4 1.0 N A:GLY661 4.1 0.7 1.0 CA A:LEU660 4.1 0.4 1.0 N A:LYS658 4.2 80.5 1.0 N A:LEU660 4.2 0.0 1.0 CB A:ASP701 4.2 80.1 1.0 N A:GLY659 4.3 1.0 1.0 CA A:GLY661 4.4 0.6 1.0 CA A:GLY659 4.4 0.9 1.0 CB A:MET657 4.5 63.0 1.0 CA A:LYS658 4.6 93.2 1.0 O A:SER656 4.8 60.7 1.0 N A:MET657 5.0 67.4 1.0

Calcium binding site 3 out of 11 in the MAGI1_2 Complexed with A Phosphorylated 16E6 Peptide


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of MAGI1_2 Complexed with A Phosphorylated 16E6 Peptide within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca905 b:0.8 occ:1.00 O A:VAL590 2.6 76.6 1.0 O A:GLY589 2.7 87.9 1.0 C A:GLY589 3.7 83.1 1.0 C A:VAL590 3.8 81.5 1.0 CG A:GLU592 3.8 91.8 1.0 OE2 A:GLU592 4.2 0.3 1.0 CD A:GLU592 4.4 0.7 1.0 N A:VAL590 4.5 80.5 1.0 CA A:VAL590 4.5 84.2 1.0 CA A:GLY589 4.6 83.7 1.0 CB A:VAL590 4.7 75.1 1.0 N A:GLU592 4.7 76.2 1.0 N A:ASP591 4.9 81.7 1.0

Calcium binding site 4 out of 11 in the MAGI1_2 Complexed with A Phosphorylated 16E6 Peptide


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of MAGI1_2 Complexed with A Phosphorylated 16E6 Peptide within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca906 b:0.2 occ:1.00 OE2 A:GLU786 3.2 66.6 1.0 O A:ARG744 3.2 65.9 1.0 OE1 A:GLU786 3.3 66.4 1.0 N A:GLY746 3.5 62.7 1.0 CD A:GLU786 3.6 63.5 1.0 O A:GLY746 3.7 62.0 1.0 CA A:LYS745 4.1 71.9 1.0 NZ A:LYS745 4.1 0.3 1.0 NZ A:LYS785 4.1 98.7 1.0 O A:GLY741 4.2 69.7 1.0 C A:LYS745 4.2 67.7 1.0 C A:GLY746 4.2 68.2 1.0 CA A:GLY746 4.2 69.2 1.0 CD A:LYS745 4.3 0.7 1.0 C A:ARG744 4.3 65.8 1.0 CE A:LYS745 4.6 0.9 1.0 N A:LYS745 4.7 68.1 1.0 OG1 A:THR747 4.7 55.8 1.0

Calcium binding site 5 out of 11 in the MAGI1_2 Complexed with A Phosphorylated 16E6 Peptide


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 5 of MAGI1_2 Complexed with A Phosphorylated 16E6 Peptide within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca907 b:73.8 occ:1.00 O A:GLY821 2.4 64.6 1.0 O A:GLY819 2.5 54.6 1.0 O A:MET817 2.6 45.1 1.0 OD1 A:ASP861 2.6 61.7 1.0 OD2 A:ASP861 2.8 66.5 1.0 CG A:ASP861 3.0 62.3 1.0 C A:MET817 3.5 45.8 1.0 C A:GLY821 3.5 58.7 1.0 C A:GLY819 3.7 55.6 1.0 N A:GLY821 3.8 56.2 1.0 CA A:MET817 3.9 49.7 1.0 N A:GLY819 4.2 50.7 1.0 CA A:GLY821 4.2 55.4 1.0 C A:LYS820 4.3 59.7 1.0 C A:LYS818 4.4 51.4 1.0 N A:LYS818 4.5 44.8 1.0 OG1 A:THR822 4.5 50.0 1.0 CA A:GLY819 4.5 45.5 1.0 CB A:ASP861 4.5 59.8 1.0 CB A:MET817 4.5 54.6 1.0 O A:HOH1014 4.5 55.8 1.0 N A:LYS820 4.6 58.8 1.0 N A:THR822 4.6 59.4 1.0 CA A:LYS820 4.6 55.6 1.0 O A:LYS818 4.8 54.0 1.0 O A:LYS820 4.8 61.7 1.0 CA A:THR822 4.9 49.3 1.0 CA A:LYS818 4.9 50.5 1.0

Calcium binding site 6 out of 11 in the MAGI1_2 Complexed with A Phosphorylated 16E6 Peptide


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 6 of MAGI1_2 Complexed with A Phosphorylated 16E6 Peptide within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca904 b:85.4 occ:1.00 OG B:SER760 3.6 66.0 1.0 N B:SER760 3.9 53.0 1.0 CB B:HIS763 4.0 43.0 1.0 CG B:HIS763 4.1 48.8 1.0 CB B:SER760 4.3 56.9 1.0 ND1 B:HIS763 4.3 45.0 1.0 CD B:ARG759 4.5 47.1 1.0 CB B:ALA719 4.5 60.5 1.0 CA B:ARG759 4.6 55.8 1.0 O B:HOH1003 4.6 65.9 1.0 CD2 B:HIS763 4.7 44.9 1.0 CA B:SER760 4.7 50.0 1.0 CB B:ARG759 4.7 57.3 1.0 CD2 B:LEU729 4.8 46.7 1.0 C B:ARG759 4.8 53.5 1.0 O B:GLU720 4.8 77.3 1.0 CE1 B:HIS763 5.0 42.9 1.0 N B:GLY722 5.0 0.0 1.0

Calcium binding site 7 out of 11 in the MAGI1_2 Complexed with A Phosphorylated 16E6 Peptide


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 7 of MAGI1_2 Complexed with A Phosphorylated 16E6 Peptide within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca905 b:0.8 occ:1.00 OE2 B:GLU592 2.6 89.2 1.0 O B:GLY589 2.6 94.9 1.0 O B:VAL590 2.7 78.8 1.0 CD B:GLU592 3.3 89.0 1.0 OE1 B:GLU592 3.3 86.3 1.0 C B:GLY589 3.6 86.9 1.0 C B:VAL590 3.8 78.3 1.0 N B:VAL590 4.4 78.9 1.0 CA B:GLY589 4.4 80.6 1.0 CA B:VAL590 4.5 74.2 1.0 CB B:VAL590 4.7 70.3 1.0 CG B:GLU592 4.7 79.2 1.0 N B:GLU592 4.8 77.1 1.0 N B:ASP591 4.9 76.3 1.0

Calcium binding site 8 out of 11 in the MAGI1_2 Complexed with A Phosphorylated 16E6 Peptide


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 8 of MAGI1_2 Complexed with A Phosphorylated 16E6 Peptide within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca906 b:0.7 occ:1.00 OE1 B:GLU635 3.0 82.2 1.0 OE2 B:GLU635 3.1 72.7 1.0 CD B:GLU635 3.4 73.1 1.0 O B:LYS627 3.7 81.6 1.0 CG B:LYS627 4.0 79.3 1.0 CD B:LYS627 4.2 83.1 1.0 C B:LYS627 4.7 76.6 1.0 O B:LEU630 4.7 69.5 1.0 CG B:GLU635 4.9 65.5 1.0

Calcium binding site 9 out of 11 in the MAGI1_2 Complexed with A Phosphorylated 16E6 Peptide


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 9 of MAGI1_2 Complexed with A Phosphorylated 16E6 Peptide within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca907 b:0.5 occ:1.00 OD2 B:ASP701 2.3 0.2 1.0 O B:GLY659 2.5 0.9 1.0 CG B:ASP701 3.1 0.9 1.0 OD1 B:ASP701 3.2 0.4 1.0 C B:GLY659 3.4 0.9 1.0 O B:MET657 3.4 95.6 1.0 N B:GLY659 4.0 0.2 1.0 C B:MET657 4.1 94.7 1.0 N B:LEU660 4.2 0.6 1.0 CA B:GLY659 4.2 0.6 1.0 CA B:LEU660 4.3 0.9 1.0 O B:LEU660 4.4 0.6 1.0 CB B:ASP701 4.5 98.0 1.0 O B:HOH1015 4.5 91.8 1.0 C B:LEU660 4.6 0.2 1.0 C B:LYS658 4.6 0.6 1.0 CG2 B:THR662 4.7 99.6 1.0 CA B:MET657 4.8 85.0 1.0 N B:LYS658 4.9 0.9 1.0 CB B:MET657 4.9 77.8 1.0 CA B:LYS658 5.0 0.9 1.0

Calcium binding site 10 out of 11 in the MAGI1_2 Complexed with A Phosphorylated 16E6 Peptide


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 10 of MAGI1_2 Complexed with A Phosphorylated 16E6 Peptide within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca908 b:0.0 occ:1.00 O B:HOH1034 2.4 77.0 1.0 N B:GLY746 3.3 78.2 1.0 O B:HOH1023 3.3 71.1 1.0 CD B:LYS745 3.5 0.4 1.0 OE2 B:GLU786 3.8 75.4 1.0 OE1 B:GLU786 3.8 71.1 1.0 O B:ARG744 3.9 77.7 1.0 CA B:LYS745 3.9 0.5 1.0 C B:LYS745 4.1 86.7 1.0 O B:GLY746 4.1 68.2 1.0 CD B:GLU786 4.1 75.3 1.0 CA B:GLY746 4.1 76.0 1.0 NZ B:LYS745 4.3 1.0 1.0 CE B:LYS745 4.3 0.8 1.0 C B:GLY746 4.4 69.9 1.0 CG B:LYS745 4.5 0.9 1.0 C B:ARG744 4.7 87.5 1.0 CB B:LYS745 4.8 0.5 1.0 N B:LYS745 4.8 98.4 1.0 OG1 B:THR747 4.9 74.2 1.0

G.Gogl, A.Cousido-Siah, G.Trave. MAGI1_2 Complexed with A Phosphorylated 16E6 Peptide To Be Published.