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Calcium in PDB 6u5n: Calcium-Bound Mthk Gating Ring State 2

Calcium Binding Sites:

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>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 24;

Binding sites:

The binding sites of Calcium atom in the Calcium-Bound Mthk Gating Ring State 2 (pdb code 6u5n). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 24 binding sites of Calcium where determined in the Calcium-Bound Mthk Gating Ring State 2, PDB code: 6u5n:
Jump to Calcium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Calcium binding site 1 out of 24 in 6u5n

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Calcium binding site 1 out of 24 in the Calcium-Bound Mthk Gating Ring State 2


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Calcium-Bound Mthk Gating Ring State 2 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca401

b:39.9
occ:1.00
 OE1 A:GLU210 2.4 14.2 1.0
OD1 A:ASP184 2.5 12.8 1.0
O A:HOH501 3.0 50.0 1.0
OD2 A:ASP184 3.1 12.8 1.0
CG A:ASP184 3.2 12.8 1.0
CD A:GLU210 3.6 14.2 1.0
OE2 A:GLU212 4.1 19.0 1.0
O A:LEU185 4.3 11.3 1.0
OG A:SER124 4.4 18.9 1.0
OE2 A:GLU210 4.5 14.2 1.0
CG A:GLU212 4.5 19.0 1.0
CG A:GLU210 4.5 14.2 1.0
CB A:ASP184 4.6 12.8 1.0
OG A:SER126 4.8 16.4 1.0
CD A:GLU212 4.8 19.0 1.0
CB A:GLU210 4.8 14.2 1.0
CB A:SER124 4.8 18.9 1.0

Calcium binding site 2 out of 24 in 6u5n

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Calcium binding site 2 out of 24 in the Calcium-Bound Mthk Gating Ring State 2


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Calcium-Bound Mthk Gating Ring State 2 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca402

b:57.9
occ:1.00
 OE2 E:GLU266 2.3 34.1 1.0
OE1 E:GLU266 2.4 34.1 1.0
O A:ASP245 2.5 24.7 1.0
CD E:GLU266 2.6 34.1 1.0
O A:ARG241 2.8 22.3 0.5
O A:ARG241 2.8 22.3 0.5
OE1 A:GLU248 3.1 23.1 1.0
OE2 A:GLU248 3.4 23.1 1.0
CD A:GLU248 3.7 23.1 1.0
C A:ASP245 3.7 24.7 1.0
N A:ASP245 3.9 24.7 1.0
C A:ARG241 4.0 22.3 0.5
C A:ARG241 4.0 22.3 0.5
CG E:GLU266 4.1 34.1 1.0
CA A:ASP245 4.4 24.7 1.0
CB A:ASP244 4.5 23.0 1.0
N A:GLY246 4.7 22.5 1.0
N A:TYR247 4.8 26.6 1.0
CA A:SER242 4.8 18.7 1.0
CA A:GLY246 4.8 22.5 1.0
C A:ASP244 4.9 23.0 1.0
N A:SER242 4.9 18.7 1.0
N A:ASP244 4.9 23.0 1.0
CB E:GLU266 5.0 34.1 1.0
CA A:ARG241 5.0 22.3 0.5
CA A:ARG241 5.0 22.3 0.5
CA A:ASP244 5.0 23.0 1.0

Calcium binding site 3 out of 24 in 6u5n

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Calcium binding site 3 out of 24 in the Calcium-Bound Mthk Gating Ring State 2


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Calcium-Bound Mthk Gating Ring State 2 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca403

b:50.9
occ:1.00
 O A:GLY290 2.1 47.1 1.0
OD2 E:ASP305 2.4 46.5 1.0
OE2 A:GLU326 2.4 54.1 1.0
OD1 E:ASP305 2.8 46.5 1.0
CG E:ASP305 2.9 46.5 1.0
CD A:GLU326 3.0 54.1 1.0
OE1 A:GLU326 3.0 54.1 1.0
C A:GLY290 3.2 47.1 1.0
CA A:GLY290 3.9 47.1 1.0
N A:VAL291 4.3 41.4 1.0
CG A:GLU326 4.4 54.1 1.0
CB E:ASP305 4.4 46.5 1.0
CA A:VAL291 4.6 41.4 1.0
CE1 A:HIS286 4.7 51.4 1.0
CA A:GLY322 4.7 44.0 1.0
N A:ILE292 4.9 36.6 1.0
O E:ASP305 4.9 46.5 1.0
O A:ILE321 4.9 36.2 1.0
ND1 A:HIS286 5.0 51.4 1.0

Calcium binding site 4 out of 24 in 6u5n

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Calcium binding site 4 out of 24 in the Calcium-Bound Mthk Gating Ring State 2


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of Calcium-Bound Mthk Gating Ring State 2 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca404

b:50.0
occ:1.00
 OE1 A:GLU266 2.5 39.2 1.0
O E:ASP245 2.6 30.8 1.0
O E:ARG241 2.7 21.1 1.0
OE2 A:GLU266 2.7 39.2 1.0
CD A:GLU266 2.9 39.2 1.0
OD1 E:ASP245 3.2 30.8 1.0
C E:ARG241 3.7 21.1 1.0
OE2 E:GLU248 3.7 29.1 1.0
C E:ASP245 3.8 30.8 1.0
N E:ASP245 3.9 30.8 1.0
CD E:GLU248 4.2 29.1 1.0
CG E:ASP245 4.3 30.8 1.0
CA E:ASP245 4.4 30.8 1.0
CG A:GLU266 4.4 39.2 1.0
CA E:ARG241 4.5 21.1 1.0
CB E:ASP244 4.5 28.5 1.0
N E:SER242 4.6 18.7 1.0
CA E:SER242 4.7 18.7 1.0
CG E:GLU248 4.7 29.1 1.0
CB E:ARG241 4.7 21.1 1.0
OE1 E:GLU248 4.9 29.1 1.0
N E:GLY246 4.9 26.5 1.0
N E:ASP244 4.9 28.5 1.0
C E:ASP244 5.0 28.5 1.0
CB E:ASP245 5.0 30.8 1.0

Calcium binding site 5 out of 24 in 6u5n

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Calcium binding site 5 out of 24 in the Calcium-Bound Mthk Gating Ring State 2


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 5 of Calcium-Bound Mthk Gating Ring State 2 within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Ca401

b:43.3
occ:1.00
 OE2 E:GLU212 2.6 16.8 1.0
OD1 E:ASP184 2.8 15.4 1.0
OD2 E:ASP184 3.3 15.4 1.0
CG E:ASP184 3.4 15.4 1.0
OE2 E:GLU210 3.5 14.6 1.0
CD E:GLU212 3.7 16.8 1.0
O E:LEU185 4.1 12.8 1.0
OG E:SER124 4.1 19.7 1.0
OE1 E:GLU212 4.1 16.8 1.0
O E:HOH501 4.2 50.0 1.0
CB E:SER124 4.4 19.7 1.0
CD E:GLU210 4.6 14.6 1.0
CE2 A:PHE232 4.7 12.8 1.0
CB E:ASP184 4.9 15.4 1.0
CG E:GLU210 4.9 14.6 1.0
CG E:GLU212 4.9 16.8 1.0

Calcium binding site 6 out of 24 in 6u5n

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Calcium binding site 6 out of 24 in the Calcium-Bound Mthk Gating Ring State 2


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 6 of Calcium-Bound Mthk Gating Ring State 2 within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Ca402

b:41.8
occ:1.00
 O E:GLY290 2.0 50.0 1.0
OD2 A:ASP305 2.3 42.7 1.0
OE2 E:GLU326 2.4 54.8 1.0
OD1 A:ASP305 2.8 42.7 1.0
CG A:ASP305 2.9 42.7 1.0
CD E:GLU326 3.0 54.8 1.0
OE1 E:GLU326 3.1 54.8 1.0
C E:GLY290 3.2 50.0 1.0
CA E:GLY290 3.9 50.0 1.0
N E:VAL291 4.3 42.7 1.0
CB A:ASP305 4.4 42.7 1.0
CG E:GLU326 4.4 54.8 1.0
NE2 E:HIS286 4.4 50.8 1.0
CA E:VAL291 4.5 42.7 1.0
CD2 E:HIS286 4.7 50.8 1.0
CA E:GLY322 4.8 43.3 1.0
O E:ILE321 4.9 32.6 1.0

Calcium binding site 7 out of 24 in 6u5n

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Calcium binding site 7 out of 24 in the Calcium-Bound Mthk Gating Ring State 2


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 7 of Calcium-Bound Mthk Gating Ring State 2 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca401

b:36.7
occ:1.00
 OD1 B:ASP184 2.6 13.6 1.0
OE2 B:GLU212 2.6 15.4 1.0
OE2 B:GLU210 2.8 13.0 1.0
CG B:ASP184 3.3 13.6 1.0
OD2 B:ASP184 3.4 13.6 1.0
CD B:GLU212 3.8 15.4 1.0
O B:LEU185 3.9 11.6 1.0
CD B:GLU210 4.0 13.0 1.0
OG B:SER124 4.0 17.4 1.0
OE1 B:GLU212 4.3 15.4 1.0
O B:HOH501 4.3 17.2 1.0
CB B:SER124 4.4 17.4 1.0
OE1 B:GLU210 4.7 13.0 1.0
CB B:ASP184 4.8 13.6 1.0
CG B:GLU210 4.8 13.0 1.0
CG B:GLU212 4.9 15.4 1.0
C B:LEU185 5.0 11.6 1.0
C B:ASP184 5.0 13.6 1.0

Calcium binding site 8 out of 24 in 6u5n

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Calcium binding site 8 out of 24 in the Calcium-Bound Mthk Gating Ring State 2


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 8 of Calcium-Bound Mthk Gating Ring State 2 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca402

b:56.0
occ:1.00
 OE1 F:GLU266 2.3 43.4 1.0
O B:ASP245 2.5 32.3 1.0
OE2 F:GLU266 2.6 43.4 1.0
CD F:GLU266 2.7 43.4 1.0
O B:ARG241 2.8 24.3 1.0
OE1 B:GLU248 3.2 30.2 1.0
OE2 B:GLU248 3.4 30.2 1.0
C B:ASP245 3.6 32.3 1.0
CD B:GLU248 3.7 30.2 1.0
N B:ASP245 3.8 32.3 1.0
C B:ARG241 4.0 24.3 1.0
CG F:GLU266 4.2 43.4 1.0
CA B:ASP245 4.3 32.3 1.0
CB B:ASP244 4.5 27.2 1.0
N B:GLY246 4.7 27.0 1.0
CB B:ASP245 4.8 32.3 1.0
CA B:ARG241 4.8 24.3 1.0
C B:ASP244 4.9 27.2 1.0
N B:TYR247 4.9 34.4 1.0
CB B:ARG241 4.9 24.3 1.0
CB F:GLU266 4.9 43.4 1.0
N B:SER242 5.0 19.7 1.0
N B:ASP244 5.0 27.2 1.0
CA B:SER242 5.0 19.7 1.0
CA B:GLY246 5.0 27.0 1.0

Calcium binding site 9 out of 24 in 6u5n

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Calcium binding site 9 out of 24 in the Calcium-Bound Mthk Gating Ring State 2


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 9 of Calcium-Bound Mthk Gating Ring State 2 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca403

b:96.2
occ:1.00
 O B:GLY290 2.2 54.5 1.0
OD2 F:ASP305 2.4 51.5 1.0
OE2 B:GLU326 2.6 64.1 1.0
OE1 B:GLU326 2.8 64.1 1.0
OD1 F:ASP305 2.8 51.5 1.0
CG F:ASP305 2.9 51.5 1.0
CD B:GLU326 3.0 64.1 1.0
C B:GLY290 3.4 54.5 1.0
CA B:GLY290 4.0 54.5 1.0
CE1 B:HIS286 4.3 53.9 1.0
CG B:GLU326 4.4 64.1 1.0
CB F:ASP305 4.4 51.5 1.0
N B:VAL291 4.5 49.1 1.0
CA B:VAL291 4.7 49.1 1.0
CA B:GLY322 4.8 50.0 1.0
ND1 B:HIS286 4.8 53.9 1.0
N B:LYS323 4.9 61.5 1.0

Calcium binding site 10 out of 24 in 6u5n

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Calcium binding site 10 out of 24 in the Calcium-Bound Mthk Gating Ring State 2


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 10 of Calcium-Bound Mthk Gating Ring State 2 within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Ca401

b:75.7
occ:1.00
 OD2 B:ASP305 2.4 48.0 1.0
OE1 F:GLU326 2.5 58.7 1.0
O F:GLY290 2.9 50.5 1.0
OD1 B:ASP305 3.0 48.0 1.0
CG B:ASP305 3.0 48.0 1.0
OE2 F:GLU326 3.1 58.7 1.0
CD F:GLU326 3.2 58.7 1.0
C F:GLY290 3.8 50.5 1.0
CA F:GLY290 4.1 50.5 1.0
CB B:ASP305 4.4 48.0 1.0
CG F:GLU326 4.6 58.7 1.0
O B:ASP305 4.8 48.0 1.0
NE2 F:HIS286 4.9 55.3 1.0

Reference:

C.Fan, N.Sukomon, E.Flood, J.Rheinberger, T.W.Allen, C.M.Nimigean. Ball-and-Chain Inactivation in A Calcium-Gated Potassium Channel Nature 2020.
ISSN: ESSN 1476-4687
Page generated: Tue Jul 16 15:42:40 2024

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