Calcium in PDB 6u6t: Neuronal Growth Regulator 1 (NEGR1)

The structure of Neuronal Growth Regulator 1 (NEGR1), PDB code: 6u6t was solved by M.Machius, H.Venkannagari, A.Misra, G.Rudenko, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	31.81 / 3.01
Space group	C 2 2 21
Cell size a, b, c (Å), α, β, γ (°)	73.569, 97.218, 252.424, 90.00, 90.00, 90.00
R / Rfree (%)	23.4 / 28.6

The binding sites of Calcium atom in the Neuronal Growth Regulator 1 (NEGR1) (pdb code 6u6t). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Neuronal Growth Regulator 1 (NEGR1), PDB code: 6u6t:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in the Neuronal Growth Regulator 1 (NEGR1)


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Neuronal Growth Regulator 1 (NEGR1) within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca406 b:58.1 occ:1.00 OD2 A:ASP189 2.3 52.2 1.0 CG A:ASP189 3.3 45.5 1.0 OD1 A:ASP189 3.6 49.2 1.0 HB2 A:TYR187 4.0 42.4 1.0 HB3 A:TYR187 4.5 42.4 1.0 HH A:TYR191 4.6 46.2 1.0 CB A:ASP189 4.7 39.9 1.0 CB A:TYR187 4.7 35.3 1.0 HB2 A:ASP189 4.7 47.9 1.0 HD2 A:TYR187 4.8 47.5 1.0 OH A:TYR191 5.0 38.5 1.0

Calcium binding site 2 out of 2 in the Neuronal Growth Regulator 1 (NEGR1)


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Neuronal Growth Regulator 1 (NEGR1) within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca407 b:98.5 occ:0.50 OD1 A:ASP143 2.5 57.5 1.0 CG A:ASP143 3.5 58.4 1.0 OD2 A:ASP143 3.8 56.6 1.0 HD21 A:ASN146 4.2 55.1 1.0 O A:ILE144 4.5 21.5 1.0 ND2 A:ASN146 4.7 45.9 1.0 H A:ILE144 4.7 25.9 1.0 HA A:SER145 4.8 25.9 1.0 CB A:ASP143 4.9 58.9 1.0

H.Venkannagari, J.Kasper, A.Misra, S.Rush, H.Sun, S.Seshadrinathan, M.Machius, J.Hommel, G.Rudenko. Neuronal Growth Regulator 1 (NEGR1) To Be Published.