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Calcium in PDB 6ueg: Pseudomonas Aeruginosa Lpxa Complex Structure with Ligand

Enzymatic activity of Pseudomonas Aeruginosa Lpxa Complex Structure with Ligand

All present enzymatic activity of Pseudomonas Aeruginosa Lpxa Complex Structure with Ligand:
2.3.1.129;

Protein crystallography data

The structure of Pseudomonas Aeruginosa Lpxa Complex Structure with Ligand, PDB code: 6ueg was solved by Y.Chen, K.Kroeck, M.Sacco, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 55.43 / 2.00
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 80.390, 82.520, 224.020, 90.00, 90.00, 90.00
R / Rfree (%) 17.6 / 23.6

Calcium Binding Sites:

The binding sites of Calcium atom in the Pseudomonas Aeruginosa Lpxa Complex Structure with Ligand (pdb code 6ueg). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Pseudomonas Aeruginosa Lpxa Complex Structure with Ligand, PDB code: 6ueg:

Calcium binding site 1 out of 1 in 6ueg

Go back to Calcium Binding Sites List in 6ueg
Calcium binding site 1 out of 1 in the Pseudomonas Aeruginosa Lpxa Complex Structure with Ligand


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Pseudomonas Aeruginosa Lpxa Complex Structure with Ligand within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca301

b:52.1
occ:1.00
O B:HOH475 3.0 17.2 1.0
OXT B:ARG258 3.3 20.1 1.0
O B:HOH439 3.5 14.9 1.0
O B:TYR219 4.2 21.3 1.0
C B:ARG258 4.5 19.3 1.0
CD1 B:TYR219 4.5 14.4 1.0
CB B:TYR219 4.6 16.2 1.0
O B:ALA190 4.7 18.8 1.0
NH1 B:ARG220 4.9 18.1 1.0
CG B:TYR219 4.9 15.2 1.0

Reference:

K.G.Kroeck, M.D.Sacco, E.W.Smith, X.Zhang, D.Shoun, A.Akhtar, S.E.Darch, F.Cohen, L.D.Andrews, J.E.Knox, Y.Chen. Discovery of Dual-Activity Small-Molecule Ligands of Pseudomonas Aeruginosa Lpxa and Lpxd Using Spr and X-Ray Crystallography. Sci Rep V. 9 15450 2019.
ISSN: ESSN 2045-2322
PubMed: 31664082
DOI: 10.1038/S41598-019-51844-Z
Page generated: Tue Jul 16 15:51:04 2024

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