Calcium in PDB 6uw5: The Crystal Structure of Fbia From Mycobacterium Smegmatis, Gdp and Fo Bound Form

All present enzymatic activity of The Crystal Structure of Fbia From Mycobacterium Smegmatis, Gdp and Fo Bound Form:
2.7.8.28;

The structure of The Crystal Structure of Fbia From Mycobacterium Smegmatis, Gdp and Fo Bound Form, PDB code: 6uw5 was solved by R.Grinter, D.Gillet, P.F.Cordero, C.Greening, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	45.82 / 2.20
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	46.013, 73.647, 91.270, 90.00, 95.23, 90.00
R / Rfree (%)	20.6 / 26.3

The binding sites of Calcium atom in the The Crystal Structure of Fbia From Mycobacterium Smegmatis, Gdp and Fo Bound Form (pdb code 6uw5). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 4 binding sites of Calcium where determined in the The Crystal Structure of Fbia From Mycobacterium Smegmatis, Gdp and Fo Bound Form, PDB code: 6uw5:
Jump to Calcium binding site number: 1; 2; 3; 4;

Calcium binding site 1 out of 4 in the The Crystal Structure of Fbia From Mycobacterium Smegmatis, Gdp and Fo Bound Form


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of The Crystal Structure of Fbia From Mycobacterium Smegmatis, Gdp and Fo Bound Form within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca403 b:27.5 occ:1.00 O B:HOH540 2.4 26.6 1.0 O B:GLN188 2.4 28.3 1.0 OE2 B:GLU144 2.4 37.3 1.0 OE1 B:GLU144 2.8 27.4 1.0 CD B:GLU144 2.8 39.9 1.0 C B:GLN188 3.6 32.3 1.0 CG B:GLU144 4.1 28.6 1.0 CB B:GLN188 4.3 34.6 1.0 CA B:GLN188 4.5 35.7 1.0 O B:HOH506 4.5 26.4 1.0 CA B:ALA189 4.5 36.2 1.0 CB B:GLU144 4.5 36.6 1.0 N B:ALA189 4.5 27.8 1.0 CG2 B:THR190 4.8 34.8 1.0 N B:THR190 5.0 30.8 1.0

Calcium binding site 2 out of 4 in the The Crystal Structure of Fbia From Mycobacterium Smegmatis, Gdp and Fo Bound Form


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of The Crystal Structure of Fbia From Mycobacterium Smegmatis, Gdp and Fo Bound Form within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca404 b:72.7 occ:1.00 O B:HOH546 2.3 51.0 1.0 OE1 B:GLN221 2.8 46.9 1.0 O B:HOH542 2.8 47.5 1.0 O B:HOH526 2.9 41.0 1.0 CD B:GLN221 3.7 34.4 1.0 NE2 B:GLN221 4.0 30.5 1.0 OD2 B:ASP187 4.7 61.4 1.0

Calcium binding site 3 out of 4 in the The Crystal Structure of Fbia From Mycobacterium Smegmatis, Gdp and Fo Bound Form


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of The Crystal Structure of Fbia From Mycobacterium Smegmatis, Gdp and Fo Bound Form within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca405 b:32.5 occ:1.00 O2B B:GDP401 2.2 30.2 1.0 OD2 B:ASP45 2.3 27.8 1.0 HC51 B:FO1402 2.5 65.3 1.0 OD1 B:ASP57 2.6 28.2 1.0 O6 B:FO1402 2.6 35.8 1.0 OD2 B:ASP57 2.6 28.4 1.0 O B:HOH517 2.6 36.4 1.0 CG B:ASP57 2.9 38.3 1.0 C18 B:FO1402 3.0 54.1 1.0 HO5' B:FO1402 3.1 43.4 1.0 CG B:ASP45 3.4 27.4 1.0 PB B:GDP401 3.5 37.5 1.0 HC4' B:FO1402 3.6 55.5 1.0 C17 B:FO1402 3.7 45.9 1.0 HO4' B:FO1402 3.7 49.0 1.0 OG B:SER215 3.7 48.1 1.0 HC52 B:FO1402 3.8 65.3 1.0 O3B B:GDP401 4.0 43.0 1.0 OD1 B:ASP45 4.0 35.1 1.0 O5 B:FO1402 4.1 40.5 1.0 N B:GLY9 4.1 45.0 1.0 ND2 B:ASN42 4.1 27.9 1.0 O1B B:GDP401 4.2 49.9 1.0 CB B:ASP57 4.4 35.9 1.0 CB B:ASP45 4.5 33.8 1.0 CA B:GLY9 4.6 40.6 1.0 O3A B:GDP401 4.7 49.5 1.0 C B:GLY8 4.8 39.8 1.0 CA B:GLY8 5.0 30.2 1.0

Calcium binding site 4 out of 4 in the The Crystal Structure of Fbia From Mycobacterium Smegmatis, Gdp and Fo Bound Form


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of The Crystal Structure of Fbia From Mycobacterium Smegmatis, Gdp and Fo Bound Form within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca402 b:42.1 occ:1.00 O A:GLY245 2.4 40.8 1.0 C A:GLY245 3.5 40.0 1.0 N A:LYS246 4.4 38.9 1.0 CA A:LYS246 4.4 38.8 1.0 CA A:GLY245 4.4 43.4 1.0 CD A:PRO247 4.7 39.9 1.0 C A:LYS246 4.8 41.4 1.0 N A:PRO247 5.0 44.9 1.0

R.Grinter, R.Ney, R.Brammananth, C.Barlow, C.R.F.Cordero, D.Gillet, T.Izore, P.Crellin, M.Cryle, R.Schittenhelm, R.Coppel, C.Greening. Cellular and Structural Basis of Synthesis of the Unique Intermediate Dehydro-F420-0 in Mycobacteria Msystems 2020.
ISSN: ISSN 2379-5077