Calcium in PDB 6uwt: Clostridium Difficile Binary Toxin Translocase Cdtb Tetradecamer in Symmetric Conformation
Calcium Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
20;
Page 3, Binding sites: 21 -
28;
Binding sites:
The binding sites of Calcium atom in the Clostridium Difficile Binary Toxin Translocase Cdtb Tetradecamer in Symmetric Conformation
(pdb code 6uwt). This binding sites where shown within
5.0 Angstroms radius around Calcium atom.
In total 28 binding sites of Calcium where determined in the
Clostridium Difficile Binary Toxin Translocase Cdtb Tetradecamer in Symmetric Conformation, PDB code: 6uwt:
Jump to Calcium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Calcium binding site 1 out
of 28 in 6uwt
Go back to
Calcium Binding Sites List in 6uwt
Calcium binding site 1 out
of 28 in the Clostridium Difficile Binary Toxin Translocase Cdtb Tetradecamer in Symmetric Conformation
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 1 of Clostridium Difficile Binary Toxin Translocase Cdtb Tetradecamer in Symmetric Conformation within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
H:Ca901
b:23.3
occ:1.00
|
O
|
H:GLU263
|
2.2
|
21.4
|
1.0
|
|
OE2
|
H:GLU231
|
2.2
|
23.1
|
1.0
|
|
OD2
|
H:ASP224
|
2.3
|
24.6
|
1.0
|
|
O
|
H:ASN260
|
2.4
|
20.8
|
1.0
|
|
OD2
|
H:ASP222
|
2.4
|
22.8
|
1.0
|
|
OD2
|
H:ASP273
|
2.7
|
18.7
|
1.0
|
|
CD
|
H:GLU231
|
3.2
|
23.1
|
1.0
|
|
CG
|
H:ASP224
|
3.3
|
24.6
|
1.0
|
|
C
|
H:GLU263
|
3.4
|
21.4
|
1.0
|
|
C
|
H:ASN260
|
3.5
|
20.8
|
1.0
|
|
CG
|
H:ASP273
|
3.6
|
18.7
|
1.0
|
|
CG
|
H:ASP222
|
3.7
|
22.8
|
1.0
|
|
O
|
H:SER264
|
3.7
|
20.2
|
1.0
|
|
OE1
|
H:GLU231
|
3.7
|
23.1
|
1.0
|
|
CB
|
H:ASP273
|
3.9
|
18.7
|
1.0
|
|
CB
|
H:ASP224
|
4.0
|
24.6
|
1.0
|
|
CA
|
H:TYR261
|
4.0
|
24.4
|
1.0
|
|
CA
|
H:CA902
|
4.2
|
23.9
|
1.0
|
|
CA
|
H:SER264
|
4.2
|
20.2
|
1.0
|
|
OD1
|
H:ASP224
|
4.2
|
24.6
|
1.0
|
|
C
|
H:SER264
|
4.2
|
20.2
|
1.0
|
|
OG1
|
H:THR266
|
4.2
|
17.6
|
1.0
|
|
N
|
H:GLU263
|
4.2
|
21.4
|
1.0
|
|
N
|
H:TYR261
|
4.3
|
24.4
|
1.0
|
|
N
|
H:SER264
|
4.3
|
20.2
|
1.0
|
|
C
|
H:TYR261
|
4.3
|
24.4
|
1.0
|
|
CG
|
H:GLU231
|
4.4
|
23.1
|
1.0
|
|
OD1
|
H:ASP222
|
4.4
|
22.8
|
1.0
|
|
CA
|
H:GLU263
|
4.5
|
21.4
|
1.0
|
|
CB
|
H:ASP222
|
4.6
|
22.8
|
1.0
|
|
O
|
H:TYR261
|
4.6
|
24.4
|
1.0
|
|
OD1
|
H:ASP273
|
4.6
|
18.7
|
1.0
|
|
CA
|
H:ASN260
|
4.7
|
20.8
|
1.0
|
|
N
|
H:ASN260
|
4.7
|
20.8
|
1.0
|
|
N
|
H:LEU262
|
4.8
|
23.4
|
1.0
|
|
Calcium binding site 2 out
of 28 in 6uwt
Go back to
Calcium Binding Sites List in 6uwt
Calcium binding site 2 out
of 28 in the Clostridium Difficile Binary Toxin Translocase Cdtb Tetradecamer in Symmetric Conformation
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 2 of Clostridium Difficile Binary Toxin Translocase Cdtb Tetradecamer in Symmetric Conformation within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
H:Ca902
b:23.9
occ:1.00
|
OD1
|
H:ASP224
|
2.3
|
24.6
|
1.0
|
|
OD1
|
H:ASP220
|
2.3
|
23.5
|
1.0
|
|
OD1
|
H:ASP222
|
2.4
|
22.8
|
1.0
|
|
O
|
H:ILE226
|
2.4
|
24.0
|
1.0
|
|
OE1
|
H:GLU231
|
2.5
|
23.1
|
1.0
|
|
OD2
|
H:ASP224
|
2.8
|
24.6
|
1.0
|
|
CG
|
H:ASP224
|
2.9
|
24.6
|
1.0
|
|
CG
|
H:ASP222
|
3.0
|
22.8
|
1.0
|
|
OD1
|
H:ASP228
|
3.1
|
23.1
|
1.0
|
|
OD2
|
H:ASP222
|
3.1
|
22.8
|
1.0
|
|
CD
|
H:GLU231
|
3.5
|
23.1
|
1.0
|
|
CG
|
H:ASP220
|
3.5
|
23.5
|
1.0
|
|
C
|
H:ILE226
|
3.6
|
24.0
|
1.0
|
|
OE2
|
H:GLU231
|
3.9
|
23.1
|
1.0
|
|
OD2
|
H:ASP220
|
4.0
|
23.5
|
1.0
|
|
O
|
H:TYR261
|
4.0
|
24.4
|
1.0
|
|
CA
|
H:CA901
|
4.2
|
23.3
|
1.0
|
|
CG
|
H:ASP228
|
4.3
|
23.1
|
1.0
|
|
N
|
H:ASP228
|
4.3
|
23.1
|
1.0
|
|
C
|
H:PRO227
|
4.3
|
21.1
|
1.0
|
|
CB
|
H:ASP224
|
4.3
|
24.6
|
1.0
|
|
CA
|
H:TYR261
|
4.3
|
24.4
|
1.0
|
|
CA
|
H:ILE226
|
4.4
|
24.0
|
1.0
|
|
CB
|
H:ASP222
|
4.5
|
22.8
|
1.0
|
|
CA
|
H:ASP228
|
4.5
|
23.1
|
1.0
|
|
N
|
H:ILE226
|
4.5
|
24.0
|
1.0
|
|
CB
|
H:ILE226
|
4.5
|
24.0
|
1.0
|
|
CB
|
H:TYR261
|
4.6
|
24.4
|
1.0
|
|
N
|
H:ASP222
|
4.6
|
22.8
|
1.0
|
|
N
|
H:PRO227
|
4.6
|
21.1
|
1.0
|
|
CG
|
H:GLU231
|
4.6
|
23.1
|
1.0
|
|
C
|
H:TYR261
|
4.6
|
24.4
|
1.0
|
|
N
|
H:ASP224
|
4.6
|
24.6
|
1.0
|
|
CA
|
H:PRO227
|
4.6
|
21.1
|
1.0
|
|
CB
|
H:ASP220
|
4.6
|
23.5
|
1.0
|
|
CB
|
H:GLU231
|
4.7
|
23.1
|
1.0
|
|
O
|
H:PRO227
|
4.7
|
21.1
|
1.0
|
|
CA
|
H:ASP220
|
4.7
|
23.5
|
1.0
|
|
N
|
H:THR221
|
4.8
|
26.7
|
1.0
|
|
CA
|
H:ASP224
|
4.9
|
24.6
|
1.0
|
|
CA
|
H:ASP222
|
5.0
|
22.8
|
1.0
|
|
Calcium binding site 3 out
of 28 in 6uwt
Go back to
Calcium Binding Sites List in 6uwt
Calcium binding site 3 out
of 28 in the Clostridium Difficile Binary Toxin Translocase Cdtb Tetradecamer in Symmetric Conformation
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 3 of Clostridium Difficile Binary Toxin Translocase Cdtb Tetradecamer in Symmetric Conformation within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
I:Ca901
b:21.3
occ:1.00
|
O
|
I:GLU263
|
2.2
|
21.6
|
1.0
|
|
OE2
|
I:GLU231
|
2.2
|
22.5
|
1.0
|
|
O
|
I:ASN260
|
2.3
|
19.3
|
1.0
|
|
OD2
|
I:ASP224
|
2.4
|
24.7
|
1.0
|
|
OD2
|
I:ASP222
|
2.4
|
23.5
|
1.0
|
|
OD2
|
I:ASP273
|
2.8
|
18.8
|
1.0
|
|
CD
|
I:GLU231
|
3.2
|
22.5
|
1.0
|
|
CG
|
I:ASP224
|
3.4
|
24.7
|
1.0
|
|
C
|
I:GLU263
|
3.4
|
21.6
|
1.0
|
|
C
|
I:ASN260
|
3.5
|
19.3
|
1.0
|
|
CG
|
I:ASP222
|
3.6
|
23.5
|
1.0
|
|
CG
|
I:ASP273
|
3.7
|
18.8
|
1.0
|
|
OE1
|
I:GLU231
|
3.7
|
22.5
|
1.0
|
|
O
|
I:SER264
|
3.8
|
20.4
|
1.0
|
|
CA
|
I:TYR261
|
4.0
|
24.8
|
1.0
|
|
CB
|
I:ASP273
|
4.0
|
18.8
|
1.0
|
|
CB
|
I:ASP224
|
4.1
|
24.7
|
1.0
|
|
CA
|
I:CA902
|
4.1
|
25.8
|
1.0
|
|
N
|
I:TYR261
|
4.2
|
24.8
|
1.0
|
|
N
|
I:GLU263
|
4.2
|
21.6
|
1.0
|
|
CA
|
I:SER264
|
4.2
|
20.4
|
1.0
|
|
OD1
|
I:ASP224
|
4.2
|
24.7
|
1.0
|
|
OG1
|
I:THR266
|
4.2
|
17.8
|
1.0
|
|
C
|
I:SER264
|
4.2
|
20.4
|
1.0
|
|
C
|
I:TYR261
|
4.3
|
24.8
|
1.0
|
|
N
|
I:SER264
|
4.3
|
20.4
|
1.0
|
|
CG
|
I:GLU231
|
4.4
|
22.5
|
1.0
|
|
OD1
|
I:ASP222
|
4.4
|
23.5
|
1.0
|
|
CA
|
I:GLU263
|
4.4
|
21.6
|
1.0
|
|
CB
|
I:ASP222
|
4.6
|
23.5
|
1.0
|
|
O
|
I:TYR261
|
4.6
|
24.8
|
1.0
|
|
CA
|
I:ASN260
|
4.6
|
19.3
|
1.0
|
|
OD1
|
I:ASP273
|
4.7
|
18.8
|
1.0
|
|
N
|
I:ASN260
|
4.7
|
19.3
|
1.0
|
|
N
|
I:LEU262
|
4.7
|
23.3
|
1.0
|
|
Calcium binding site 4 out
of 28 in 6uwt
Go back to
Calcium Binding Sites List in 6uwt
Calcium binding site 4 out
of 28 in the Clostridium Difficile Binary Toxin Translocase Cdtb Tetradecamer in Symmetric Conformation
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 4 of Clostridium Difficile Binary Toxin Translocase Cdtb Tetradecamer in Symmetric Conformation within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
I:Ca902
b:25.8
occ:1.00
|
OD1
|
I:ASP224
|
2.3
|
24.7
|
1.0
|
|
OD1
|
I:ASP220
|
2.4
|
24.1
|
1.0
|
|
OD1
|
I:ASP222
|
2.4
|
23.5
|
1.0
|
|
O
|
I:ILE226
|
2.4
|
24.2
|
1.0
|
|
OE1
|
I:GLU231
|
2.5
|
22.5
|
1.0
|
|
OD2
|
I:ASP224
|
2.7
|
24.7
|
1.0
|
|
CG
|
I:ASP224
|
2.8
|
24.7
|
1.0
|
|
CG
|
I:ASP222
|
3.0
|
23.5
|
1.0
|
|
OD2
|
I:ASP222
|
3.0
|
23.5
|
1.0
|
|
OD1
|
I:ASP228
|
3.1
|
24.4
|
1.0
|
|
CD
|
I:GLU231
|
3.4
|
22.5
|
1.0
|
|
CG
|
I:ASP220
|
3.5
|
24.1
|
1.0
|
|
C
|
I:ILE226
|
3.7
|
24.2
|
1.0
|
|
OE2
|
I:GLU231
|
3.9
|
22.5
|
1.0
|
|
O
|
I:TYR261
|
4.0
|
24.8
|
1.0
|
|
OD2
|
I:ASP220
|
4.1
|
24.1
|
1.0
|
|
CA
|
I:CA901
|
4.1
|
21.3
|
1.0
|
|
CG
|
I:ASP228
|
4.3
|
24.4
|
1.0
|
|
N
|
I:ASP228
|
4.3
|
24.4
|
1.0
|
|
CB
|
I:ASP224
|
4.3
|
24.7
|
1.0
|
|
CA
|
I:TYR261
|
4.3
|
24.8
|
1.0
|
|
C
|
I:PRO227
|
4.3
|
22.2
|
1.0
|
|
CA
|
I:ILE226
|
4.5
|
24.2
|
1.0
|
|
CB
|
I:ASP222
|
4.5
|
23.5
|
1.0
|
|
CA
|
I:ASP228
|
4.5
|
24.4
|
1.0
|
|
CB
|
I:ILE226
|
4.5
|
24.2
|
1.0
|
|
N
|
I:ILE226
|
4.5
|
24.2
|
1.0
|
|
CB
|
I:TYR261
|
4.5
|
24.8
|
1.0
|
|
CG
|
I:GLU231
|
4.6
|
22.5
|
1.0
|
|
N
|
I:ASP222
|
4.6
|
23.5
|
1.0
|
|
N
|
I:PRO227
|
4.6
|
22.2
|
1.0
|
|
C
|
I:TYR261
|
4.6
|
24.8
|
1.0
|
|
N
|
I:ASP224
|
4.6
|
24.7
|
1.0
|
|
CB
|
I:GLU231
|
4.6
|
22.5
|
1.0
|
|
CA
|
I:PRO227
|
4.6
|
22.2
|
1.0
|
|
CB
|
I:ASP220
|
4.7
|
24.1
|
1.0
|
|
O
|
I:PRO227
|
4.7
|
22.2
|
1.0
|
|
CA
|
I:ASP220
|
4.7
|
24.1
|
1.0
|
|
N
|
I:THR221
|
4.8
|
25.9
|
1.0
|
|
CA
|
I:ASP224
|
4.9
|
24.7
|
1.0
|
|
CA
|
I:ASP222
|
5.0
|
23.5
|
1.0
|
|
Calcium binding site 5 out
of 28 in 6uwt
Go back to
Calcium Binding Sites List in 6uwt
Calcium binding site 5 out
of 28 in the Clostridium Difficile Binary Toxin Translocase Cdtb Tetradecamer in Symmetric Conformation
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 5 of Clostridium Difficile Binary Toxin Translocase Cdtb Tetradecamer in Symmetric Conformation within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
J:Ca901
b:21.4
occ:1.00
|
O
|
J:GLU263
|
2.2
|
20.8
|
1.0
|
|
OE2
|
J:GLU231
|
2.2
|
23.1
|
1.0
|
|
O
|
J:ASN260
|
2.3
|
20.5
|
1.0
|
|
OD2
|
J:ASP224
|
2.4
|
25.7
|
1.0
|
|
OD2
|
J:ASP222
|
2.5
|
23.1
|
1.0
|
|
OD2
|
J:ASP273
|
2.7
|
18.7
|
1.0
|
|
CD
|
J:GLU231
|
3.2
|
23.1
|
1.0
|
|
CG
|
J:ASP224
|
3.4
|
25.7
|
1.0
|
|
C
|
J:GLU263
|
3.4
|
20.8
|
1.0
|
|
C
|
J:ASN260
|
3.5
|
20.5
|
1.0
|
|
CG
|
J:ASP273
|
3.6
|
18.7
|
1.0
|
|
O
|
J:SER264
|
3.7
|
19.8
|
1.0
|
|
CG
|
J:ASP222
|
3.7
|
23.1
|
1.0
|
|
OE1
|
J:GLU231
|
3.8
|
23.1
|
1.0
|
|
CB
|
J:ASP273
|
3.9
|
18.7
|
1.0
|
|
CB
|
J:ASP224
|
4.0
|
25.7
|
1.0
|
|
CA
|
J:TYR261
|
4.1
|
25.1
|
1.0
|
|
OG1
|
J:THR266
|
4.2
|
17.6
|
1.0
|
|
CA
|
J:SER264
|
4.2
|
19.8
|
1.0
|
|
CA
|
J:CA902
|
4.2
|
25.9
|
1.0
|
|
C
|
J:SER264
|
4.2
|
19.8
|
1.0
|
|
OD1
|
J:ASP224
|
4.2
|
25.7
|
1.0
|
|
N
|
J:TYR261
|
4.3
|
25.1
|
1.0
|
|
N
|
J:GLU263
|
4.3
|
20.8
|
1.0
|
|
N
|
J:SER264
|
4.3
|
19.8
|
1.0
|
|
C
|
J:TYR261
|
4.4
|
25.1
|
1.0
|
|
CG
|
J:GLU231
|
4.4
|
23.1
|
1.0
|
|
CA
|
J:GLU263
|
4.5
|
20.8
|
1.0
|
|
OD1
|
J:ASP222
|
4.5
|
23.1
|
1.0
|
|
OD1
|
J:ASP273
|
4.6
|
18.7
|
1.0
|
|
CB
|
J:ASP222
|
4.6
|
23.1
|
1.0
|
|
CA
|
J:ASN260
|
4.6
|
20.5
|
1.0
|
|
O
|
J:TYR261
|
4.7
|
25.1
|
1.0
|
|
N
|
J:ASN260
|
4.7
|
20.5
|
1.0
|
|
N
|
J:LEU262
|
4.8
|
23.3
|
1.0
|
|
Calcium binding site 6 out
of 28 in 6uwt
Go back to
Calcium Binding Sites List in 6uwt
Calcium binding site 6 out
of 28 in the Clostridium Difficile Binary Toxin Translocase Cdtb Tetradecamer in Symmetric Conformation
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 6 of Clostridium Difficile Binary Toxin Translocase Cdtb Tetradecamer in Symmetric Conformation within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
J:Ca902
b:25.9
occ:1.00
|
OD1
|
J:ASP224
|
2.3
|
25.7
|
1.0
|
|
OD1
|
J:ASP222
|
2.4
|
23.1
|
1.0
|
|
OD1
|
J:ASP220
|
2.4
|
23.0
|
1.0
|
|
OE1
|
J:GLU231
|
2.5
|
23.1
|
1.0
|
|
O
|
J:ILE226
|
2.5
|
23.9
|
1.0
|
|
OD2
|
J:ASP224
|
2.7
|
25.7
|
1.0
|
|
CG
|
J:ASP224
|
2.8
|
25.7
|
1.0
|
|
OD2
|
J:ASP222
|
3.0
|
23.1
|
1.0
|
|
CG
|
J:ASP222
|
3.0
|
23.1
|
1.0
|
|
OD1
|
J:ASP228
|
3.1
|
23.8
|
1.0
|
|
CD
|
J:GLU231
|
3.4
|
23.1
|
1.0
|
|
CG
|
J:ASP220
|
3.5
|
23.0
|
1.0
|
|
C
|
J:ILE226
|
3.7
|
23.9
|
1.0
|
|
OE2
|
J:GLU231
|
3.9
|
23.1
|
1.0
|
|
O
|
J:TYR261
|
4.0
|
25.1
|
1.0
|
|
OD2
|
J:ASP220
|
4.1
|
23.0
|
1.0
|
|
CA
|
J:CA901
|
4.2
|
21.4
|
1.0
|
|
CG
|
J:ASP228
|
4.3
|
23.8
|
1.0
|
|
CA
|
J:TYR261
|
4.3
|
25.1
|
1.0
|
|
N
|
J:ASP228
|
4.3
|
23.8
|
1.0
|
|
CB
|
J:ASP224
|
4.3
|
25.7
|
1.0
|
|
C
|
J:PRO227
|
4.3
|
21.7
|
1.0
|
|
CA
|
J:ILE226
|
4.5
|
23.9
|
1.0
|
|
CB
|
J:ASP222
|
4.5
|
23.1
|
1.0
|
|
CA
|
J:ASP228
|
4.5
|
23.8
|
1.0
|
|
CB
|
J:TYR261
|
4.5
|
25.1
|
1.0
|
|
CB
|
J:ILE226
|
4.5
|
23.9
|
1.0
|
|
N
|
J:ILE226
|
4.5
|
23.9
|
1.0
|
|
CG
|
J:GLU231
|
4.6
|
23.1
|
1.0
|
|
C
|
J:TYR261
|
4.6
|
25.1
|
1.0
|
|
N
|
J:ASP222
|
4.6
|
23.1
|
1.0
|
|
N
|
J:PRO227
|
4.6
|
21.7
|
1.0
|
|
CB
|
J:GLU231
|
4.6
|
23.1
|
1.0
|
|
N
|
J:ASP224
|
4.6
|
25.7
|
1.0
|
|
CA
|
J:PRO227
|
4.7
|
21.7
|
1.0
|
|
O
|
J:PRO227
|
4.7
|
21.7
|
1.0
|
|
CB
|
J:ASP220
|
4.7
|
23.0
|
1.0
|
|
CA
|
J:ASP220
|
4.7
|
23.0
|
1.0
|
|
N
|
J:THR221
|
4.8
|
25.1
|
1.0
|
|
CA
|
J:ASP224
|
5.0
|
25.7
|
1.0
|
|
CA
|
J:ASP222
|
5.0
|
23.1
|
1.0
|
|
Calcium binding site 7 out
of 28 in 6uwt
Go back to
Calcium Binding Sites List in 6uwt
Calcium binding site 7 out
of 28 in the Clostridium Difficile Binary Toxin Translocase Cdtb Tetradecamer in Symmetric Conformation
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 7 of Clostridium Difficile Binary Toxin Translocase Cdtb Tetradecamer in Symmetric Conformation within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
K:Ca901
b:23.5
occ:1.00
|
OE2
|
K:GLU231
|
2.2
|
24.8
|
1.0
|
|
O
|
K:GLU263
|
2.2
|
21.9
|
1.0
|
|
O
|
K:ASN260
|
2.4
|
22.2
|
1.0
|
|
OD2
|
K:ASP224
|
2.4
|
24.9
|
1.0
|
|
OD2
|
K:ASP273
|
2.6
|
20.5
|
1.0
|
|
OD2
|
K:ASP222
|
2.6
|
24.6
|
1.0
|
|
CD
|
K:GLU231
|
3.3
|
24.8
|
1.0
|
|
CG
|
K:ASP224
|
3.4
|
24.9
|
1.0
|
|
CG
|
K:ASP273
|
3.4
|
20.5
|
1.0
|
|
C
|
K:GLU263
|
3.5
|
21.9
|
1.0
|
|
C
|
K:ASN260
|
3.6
|
22.2
|
1.0
|
|
O
|
K:SER264
|
3.6
|
21.8
|
1.0
|
|
CB
|
K:ASP273
|
3.8
|
20.5
|
1.0
|
|
OE1
|
K:GLU231
|
3.8
|
24.8
|
1.0
|
|
CG
|
K:ASP222
|
3.8
|
24.6
|
1.0
|
|
CB
|
K:ASP224
|
4.0
|
24.9
|
1.0
|
|
OG1
|
K:THR266
|
4.1
|
18.9
|
1.0
|
|
C
|
K:SER264
|
4.1
|
21.8
|
1.0
|
|
CA
|
K:SER264
|
4.2
|
21.8
|
1.0
|
|
CA
|
K:TYR261
|
4.2
|
25.7
|
1.0
|
|
N
|
K:SER264
|
4.3
|
21.8
|
1.0
|
|
OD1
|
K:ASP224
|
4.3
|
24.9
|
1.0
|
|
CA
|
K:CA902
|
4.3
|
24.1
|
1.0
|
|
N
|
K:TYR261
|
4.3
|
25.7
|
1.0
|
|
N
|
K:GLU263
|
4.3
|
21.9
|
1.0
|
|
CG
|
K:GLU231
|
4.4
|
24.8
|
1.0
|
|
OD1
|
K:ASP273
|
4.5
|
20.5
|
1.0
|
|
C
|
K:TYR261
|
4.5
|
25.7
|
1.0
|
|
CA
|
K:GLU263
|
4.5
|
21.9
|
1.0
|
|
OD1
|
K:ASP222
|
4.6
|
24.6
|
1.0
|
|
CA
|
K:ASN260
|
4.7
|
22.2
|
1.0
|
|
N
|
K:ASN260
|
4.7
|
22.2
|
1.0
|
|
CB
|
K:ASP222
|
4.7
|
24.6
|
1.0
|
|
O
|
K:TYR261
|
4.8
|
25.7
|
1.0
|
|
N
|
K:LEU262
|
4.9
|
25.8
|
1.0
|
|
OG
|
K:SER259
|
5.0
|
20.5
|
1.0
|
|
CB
|
K:SER259
|
5.0
|
20.5
|
1.0
|
|
Calcium binding site 8 out
of 28 in 6uwt
Go back to
Calcium Binding Sites List in 6uwt
Calcium binding site 8 out
of 28 in the Clostridium Difficile Binary Toxin Translocase Cdtb Tetradecamer in Symmetric Conformation
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 8 of Clostridium Difficile Binary Toxin Translocase Cdtb Tetradecamer in Symmetric Conformation within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
K:Ca902
b:24.1
occ:1.00
|
OD1
|
K:ASP224
|
2.3
|
24.9
|
1.0
|
|
OD1
|
K:ASP220
|
2.4
|
24.3
|
1.0
|
|
O
|
K:ILE226
|
2.4
|
24.1
|
1.0
|
|
OE1
|
K:GLU231
|
2.4
|
24.8
|
1.0
|
|
OD1
|
K:ASP222
|
2.4
|
24.6
|
1.0
|
|
OD2
|
K:ASP224
|
2.8
|
24.9
|
1.0
|
|
CG
|
K:ASP224
|
2.9
|
24.9
|
1.0
|
|
OD1
|
K:ASP228
|
3.1
|
24.1
|
1.0
|
|
OD2
|
K:ASP222
|
3.1
|
24.6
|
1.0
|
|
CG
|
K:ASP222
|
3.1
|
24.6
|
1.0
|
|
CD
|
K:GLU231
|
3.4
|
24.8
|
1.0
|
|
CG
|
K:ASP220
|
3.5
|
24.3
|
1.0
|
|
C
|
K:ILE226
|
3.6
|
24.1
|
1.0
|
|
OE2
|
K:GLU231
|
3.9
|
24.8
|
1.0
|
|
OD2
|
K:ASP220
|
4.1
|
24.3
|
1.0
|
|
O
|
K:TYR261
|
4.1
|
25.7
|
1.0
|
|
N
|
K:ASP228
|
4.2
|
24.1
|
1.0
|
|
C
|
K:PRO227
|
4.3
|
21.4
|
1.0
|
|
CG
|
K:ASP228
|
4.3
|
24.1
|
1.0
|
|
CA
|
K:CA901
|
4.3
|
23.5
|
1.0
|
|
CA
|
K:TYR261
|
4.3
|
25.7
|
1.0
|
|
CB
|
K:ASP224
|
4.4
|
24.9
|
1.0
|
|
CA
|
K:ILE226
|
4.4
|
24.1
|
1.0
|
|
CB
|
K:ILE226
|
4.5
|
24.1
|
1.0
|
|
CA
|
K:ASP228
|
4.5
|
24.1
|
1.0
|
|
N
|
K:ILE226
|
4.5
|
24.1
|
1.0
|
|
N
|
K:PRO227
|
4.5
|
21.4
|
1.0
|
|
CG
|
K:GLU231
|
4.5
|
24.8
|
1.0
|
|
CB
|
K:TYR261
|
4.5
|
25.7
|
1.0
|
|
CB
|
K:ASP222
|
4.6
|
24.6
|
1.0
|
|
CB
|
K:GLU231
|
4.6
|
24.8
|
1.0
|
|
CA
|
K:PRO227
|
4.6
|
21.4
|
1.0
|
|
O
|
K:PRO227
|
4.6
|
21.4
|
1.0
|
|
C
|
K:TYR261
|
4.6
|
25.7
|
1.0
|
|
N
|
K:ASP222
|
4.7
|
24.6
|
1.0
|
|
CB
|
K:ASP220
|
4.7
|
24.3
|
1.0
|
|
N
|
K:ASP224
|
4.7
|
24.9
|
1.0
|
|
CA
|
K:ASP220
|
4.7
|
24.3
|
1.0
|
|
N
|
K:THR221
|
4.9
|
27.6
|
1.0
|
|
CA
|
K:ASP224
|
5.0
|
24.9
|
1.0
|
|
CB
|
K:ASP228
|
5.0
|
24.1
|
1.0
|
|
Calcium binding site 9 out
of 28 in 6uwt
Go back to
Calcium Binding Sites List in 6uwt
Calcium binding site 9 out
of 28 in the Clostridium Difficile Binary Toxin Translocase Cdtb Tetradecamer in Symmetric Conformation
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 9 of Clostridium Difficile Binary Toxin Translocase Cdtb Tetradecamer in Symmetric Conformation within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
L:Ca901
b:22.4
occ:1.00
|
O
|
L:GLU263
|
2.2
|
21.8
|
1.0
|
|
OE2
|
L:GLU231
|
2.2
|
23.2
|
1.0
|
|
O
|
L:ASN260
|
2.2
|
20.1
|
1.0
|
|
OD2
|
L:ASP222
|
2.3
|
22.3
|
1.0
|
|
OD2
|
L:ASP224
|
2.4
|
22.8
|
1.0
|
|
OD2
|
L:ASP273
|
2.9
|
18.5
|
1.0
|
|
CD
|
L:GLU231
|
3.2
|
23.2
|
1.0
|
|
CG
|
L:ASP224
|
3.4
|
22.8
|
1.0
|
|
C
|
L:ASN260
|
3.4
|
20.1
|
1.0
|
|
C
|
L:GLU263
|
3.4
|
21.8
|
1.0
|
|
CG
|
L:ASP222
|
3.6
|
22.3
|
1.0
|
|
OE1
|
L:GLU231
|
3.7
|
23.2
|
1.0
|
|
CG
|
L:ASP273
|
3.8
|
18.5
|
1.0
|
|
CA
|
L:TYR261
|
3.9
|
24.4
|
1.0
|
|
O
|
L:SER264
|
3.9
|
21.8
|
1.0
|
|
N
|
L:TYR261
|
4.1
|
24.4
|
1.0
|
|
CB
|
L:ASP273
|
4.1
|
18.5
|
1.0
|
|
CA
|
L:CA902
|
4.1
|
24.8
|
1.0
|
|
CB
|
L:ASP224
|
4.1
|
22.8
|
1.0
|
|
N
|
L:GLU263
|
4.1
|
21.8
|
1.0
|
|
C
|
L:TYR261
|
4.1
|
24.4
|
1.0
|
|
OD1
|
L:ASP224
|
4.2
|
22.8
|
1.0
|
|
OG1
|
L:THR266
|
4.3
|
19.3
|
1.0
|
|
CA
|
L:SER264
|
4.3
|
21.8
|
1.0
|
|
CG
|
L:GLU231
|
4.3
|
23.2
|
1.0
|
|
N
|
L:SER264
|
4.3
|
21.8
|
1.0
|
|
C
|
L:SER264
|
4.3
|
21.8
|
1.0
|
|
OD1
|
L:ASP222
|
4.4
|
22.3
|
1.0
|
|
CA
|
L:GLU263
|
4.4
|
21.8
|
1.0
|
|
O
|
L:TYR261
|
4.5
|
24.4
|
1.0
|
|
CB
|
L:ASP222
|
4.5
|
22.3
|
1.0
|
|
CA
|
L:ASN260
|
4.6
|
20.1
|
1.0
|
|
N
|
L:LEU262
|
4.6
|
23.5
|
1.0
|
|
N
|
L:ASN260
|
4.7
|
20.1
|
1.0
|
|
OD1
|
L:ASP273
|
4.8
|
18.5
|
1.0
|
|
Calcium binding site 10 out
of 28 in 6uwt
Go back to
Calcium Binding Sites List in 6uwt
Calcium binding site 10 out
of 28 in the Clostridium Difficile Binary Toxin Translocase Cdtb Tetradecamer in Symmetric Conformation
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 10 of Clostridium Difficile Binary Toxin Translocase Cdtb Tetradecamer in Symmetric Conformation within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
L:Ca902
b:24.8
occ:1.00
|
OD1
|
L:ASP224
|
2.3
|
22.8
|
1.0
|
|
OD1
|
L:ASP222
|
2.3
|
22.3
|
1.0
|
|
OD1
|
L:ASP220
|
2.4
|
22.5
|
1.0
|
|
O
|
L:ILE226
|
2.5
|
23.4
|
1.0
|
|
OE1
|
L:GLU231
|
2.5
|
23.2
|
1.0
|
|
OD2
|
L:ASP224
|
2.8
|
22.8
|
1.0
|
|
CG
|
L:ASP224
|
2.9
|
22.8
|
1.0
|
|
OD1
|
L:ASP228
|
3.0
|
23.6
|
1.0
|
|
CG
|
L:ASP222
|
3.0
|
22.3
|
1.0
|
|
OD2
|
L:ASP222
|
3.0
|
22.3
|
1.0
|
|
CD
|
L:GLU231
|
3.4
|
23.2
|
1.0
|
|
CG
|
L:ASP220
|
3.5
|
22.5
|
1.0
|
|
C
|
L:ILE226
|
3.7
|
23.4
|
1.0
|
|
OE2
|
L:GLU231
|
3.9
|
23.2
|
1.0
|
|
O
|
L:TYR261
|
4.0
|
24.4
|
1.0
|
|
OD2
|
L:ASP220
|
4.1
|
22.5
|
1.0
|
|
CA
|
L:CA901
|
4.1
|
22.4
|
1.0
|
|
CG
|
L:ASP228
|
4.2
|
23.6
|
1.0
|
|
N
|
L:ASP228
|
4.3
|
23.6
|
1.0
|
|
CA
|
L:TYR261
|
4.3
|
24.4
|
1.0
|
|
C
|
L:PRO227
|
4.3
|
22.4
|
1.0
|
|
CB
|
L:ASP224
|
4.4
|
22.8
|
1.0
|
|
CA
|
L:ASP228
|
4.5
|
23.6
|
1.0
|
|
CB
|
L:ASP222
|
4.5
|
22.3
|
1.0
|
|
CB
|
L:TYR261
|
4.5
|
24.4
|
1.0
|
|
CA
|
L:ILE226
|
4.5
|
23.4
|
1.0
|
|
C
|
L:TYR261
|
4.6
|
24.4
|
1.0
|
|
CB
|
L:ILE226
|
4.6
|
23.4
|
1.0
|
|
N
|
L:ASP222
|
4.6
|
22.3
|
1.0
|
|
N
|
L:ILE226
|
4.6
|
23.4
|
1.0
|
|
CG
|
L:GLU231
|
4.6
|
23.2
|
1.0
|
|
N
|
L:PRO227
|
4.6
|
22.4
|
1.0
|
|
CB
|
L:GLU231
|
4.6
|
23.2
|
1.0
|
|
CA
|
L:PRO227
|
4.6
|
22.4
|
1.0
|
|
CB
|
L:ASP220
|
4.7
|
22.5
|
1.0
|
|
O
|
L:PRO227
|
4.7
|
22.4
|
1.0
|
|
N
|
L:ASP224
|
4.7
|
22.8
|
1.0
|
|
CA
|
L:ASP220
|
4.7
|
22.5
|
1.0
|
|
N
|
L:THR221
|
4.8
|
24.1
|
1.0
|
|
CB
|
L:ASP228
|
5.0
|
23.6
|
1.0
|
|
CA
|
L:ASP222
|
5.0
|
22.3
|
1.0
|
|
CA
|
L:ASP224
|
5.0
|
22.8
|
1.0
|
|
Reference:
X.Xu,
R.Godoy-Ruiz,
K.A.Adipietro,
C.Peralta,
D.Ben-Hail,
K.M.Varney,
M.E.Cook,
B.M.Roth,
P.T.Wilder,
T.Cleveland,
A.Grishaev,
H.M.Neu,
S.L.J.Michel,
W.Yu,
D.Beckett,
R.R.Rustandi,
C.Lancaster,
J.W.Loughney,
A.Kristopeit,
S.Christanti,
J.W.Olson,
A.D.Mackerell,
A.D.Georges,
E.Pozharski,
D.J.Weber.
Structure of the Cell-Binding Component of Theclostridium Difficilebinary Toxin Reveals A Di-Heptamer Macromolecular Assembly. Proc.Natl.Acad.Sci.Usa V. 117 1049 2020.
ISSN: ESSN 1091-6490
PubMed: 31896582
DOI: 10.1073/PNAS.1919490117
Page generated: Sat Dec 12 07:48:13 2020
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