Calcium in PDB 6v55: Full Extracellular Region of Zebrafish GPR126/ADGRG6

The structure of Full Extracellular Region of Zebrafish GPR126/ADGRG6, PDB code: 6v55 was solved by K.Leon, D.Arac, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	47.90 / 2.38
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	144.960, 59.448, 168.385, 90.00, 107.82, 90.00
R / Rfree (%)	21.2 / 27.2

The binding sites of Calcium atom in the Full Extracellular Region of Zebrafish GPR126/ADGRG6 (pdb code 6v55). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Full Extracellular Region of Zebrafish GPR126/ADGRG6, PDB code: 6v55:

Calcium binding site 1 out of 1 in the Full Extracellular Region of Zebrafish GPR126/ADGRG6


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Full Extracellular Region of Zebrafish GPR126/ADGRG6 within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca901 b:19.6 occ:1.00 OE1 A:GLU89 2.4 17.6 1.0 O A:SER136 2.5 26.3 1.0 OD2 A:ASP134 2.5 17.1 1.0 O A:VAL137 2.5 25.0 1.0 OD1 A:ASP97 2.5 21.1 1.0 O A:HOH1038 2.6 59.2 1.0 OD2 A:ASP97 2.7 20.3 1.0 CG A:ASP97 3.0 22.2 1.0 C A:SER136 3.5 20.2 1.0 C A:VAL137 3.5 18.1 1.0 CG A:ASP134 3.6 18.6 1.0 CD A:GLU89 3.6 20.4 1.0 N A:ASP134 3.8 13.1 1.0 NE2 A:GLN138 4.0 18.3 1.0 O A:ASP134 4.2 18.6 1.0 N A:VAL137 4.2 16.3 1.0 N A:SER136 4.2 20.2 1.0 CA A:VAL137 4.2 12.6 1.0 NZ A:LYS536 4.3 17.2 1.0 OE2 A:GLU89 4.3 20.9 1.0 C A:ASP134 4.3 20.9 1.0 OD1 A:ASP134 4.3 21.9 1.0 CA A:ASP134 4.4 15.6 1.0 CB A:GLU89 4.5 13.3 1.0 CA A:SER136 4.5 19.1 1.0 CB A:ASP97 4.5 19.2 1.0 N A:GLN138 4.5 18.8 1.0 CB A:VAL137 4.5 12.7 1.0 CB A:SER133 4.5 17.9 1.0 CB A:ASP134 4.6 13.2 1.0 CE1 A:TYR61 4.6 12.8 1.0 CG A:GLN138 4.6 15.7 1.0 CG A:GLU89 4.7 17.1 1.0 CA A:GLN138 4.7 15.7 1.0 C A:SER133 4.7 18.1 1.0 OH A:TYR61 4.8 13.7 1.0 CA A:SER133 4.8 20.0 1.0 CD A:GLN138 4.8 21.6 1.0 N A:PHE135 4.9 24.9 1.0 N A:ASP97 5.0 13.6 1.0

T.R.Sosnick, K.R.Monk, D.Arac, M.Zhao, K.Leon, R.L.Cunningham, J.L.Riback, E.Feldman, J.Li. Structural Basis For Adhesion G Protein-Coupled Receptor GPR126 Function Nat Commun 2020.
ISSN: ESSN 2041-1723
DOI: 10.1038/S41467-019-14040-1