Calcium in PDB 6v7j: The C2221 Crystal Form of Canavalin at 173 K

The structure of The C2221 Crystal Form of Canavalin at 173 K, PDB code: 6v7j was solved by A.Mcpherson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	50.01 / 2.00
Space group	C 2 2 21
Cell size a, b, c (Å), α, β, γ (°)	136.347, 149.247, 128.046, 90.00, 90.00, 90.00
R / Rfree (%)	19.6 / 24.7

The binding sites of Calcium atom in the The C2221 Crystal Form of Canavalin at 173 K (pdb code 6v7j). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 3 binding sites of Calcium where determined in the The C2221 Crystal Form of Canavalin at 173 K, PDB code: 6v7j:
Jump to Calcium binding site number: 1; 2; 3;

Calcium binding site 1 out of 3 in the The C2221 Crystal Form of Canavalin at 173 K


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of The C2221 Crystal Form of Canavalin at 173 K within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca503 b:74.7 occ:1.00 O A:GLY401 2.2 54.5 1.0 O A:ASP396 2.3 54.9 1.0 O A:PHE399 2.5 46.5 1.0 O A:PRO400 3.2 53.1 1.0 OE2 C:GLU214 3.3 92.7 1.0 C A:GLY401 3.4 48.9 1.0 C A:ASP396 3.4 51.5 1.0 OD1 A:ASP396 3.4 62.1 1.0 C A:PRO400 3.5 53.1 1.0 C A:PHE399 3.7 52.0 1.0 CD C:GLU214 3.8 96.3 1.0 CA A:ASP396 3.8 52.7 1.0 OE1 C:GLU214 4.0 84.0 1.0 CA A:PRO400 4.0 52.5 1.0 N A:GLY401 4.0 50.2 1.0 CG A:ASP396 4.0 60.2 1.0 N A:SER402 4.2 49.2 1.0 N A:PRO400 4.3 53.1 1.0 CA A:GLY401 4.3 49.1 1.0 CA A:SER402 4.4 51.2 1.0 CB A:ASP396 4.5 56.1 1.0 N A:LEU397 4.6 47.5 1.0 O A:SER395 4.8 43.2 1.0 OD2 A:ASP396 4.8 68.6 1.0 CA A:PHE399 4.9 46.5 1.0 N A:PHE399 4.9 47.0 1.0 CG C:GLU214 4.9 93.2 1.0

Calcium binding site 2 out of 3 in the The C2221 Crystal Form of Canavalin at 173 K


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of The C2221 Crystal Form of Canavalin at 173 K within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca504 b:0.4 occ:1.00 O A:GLU310 2.7 44.4 1.0 O A:ASN363 3.0 46.4 1.0 N A:ASN309 3.2 46.6 1.0 O A:GLY311 3.3 41.6 1.0 C A:GLU310 3.3 49.5 1.0 CB A:ALA308 3.4 44.4 1.0 CA A:ALA308 3.4 42.6 1.0 N A:GLU310 3.4 49.3 1.0 CG A:MET364 3.6 45.5 1.0 C A:ALA308 3.6 45.5 1.0 C A:GLY311 3.9 49.7 1.0 C A:ASN363 4.0 44.4 1.0 CA A:GLU310 4.0 52.0 1.0 C A:ASN309 4.0 51.0 1.0 N A:GLY311 4.1 48.9 1.0 CB A:LEU362 4.2 46.4 1.0 CA A:ASN309 4.2 45.6 1.0 N A:ASN363 4.3 42.4 1.0 CE A:MET364 4.4 45.9 1.0 CA A:GLY311 4.5 46.1 1.0 SD A:MET364 4.5 46.6 1.0 N A:ARG312 4.7 48.0 1.0 O A:ALA308 4.7 48.4 1.0 CB A:MET364 4.8 41.6 1.0 CA A:LEU362 4.8 44.2 1.0 N A:MET364 4.8 43.0 1.0 N A:ALA308 4.8 38.4 1.0 CA A:MET364 4.8 39.2 1.0 CA A:ASN363 4.9 44.6 1.0 O A:LEU340 4.9 44.9 1.0 O A:ASN309 4.9 57.5 1.0 CB A:ALA313 5.0 46.6 1.0

Calcium binding site 3 out of 3 in the The C2221 Crystal Form of Canavalin at 173 K


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of The C2221 Crystal Form of Canavalin at 173 K within 5.0Å range: probe atom residue distance (Å) B Occ C:Ca503 b:0.1 occ:1.00 OD1 C:ASN150 2.7 48.7 1.0 O C:GLN155 2.8 55.3 1.0 O C:ASN156 3.1 50.1 1.0 CG C:ASN150 3.2 49.3 1.0 ND2 C:ASN150 3.2 48.1 1.0 O C:HOH718 3.3 58.6 1.0 N C:GLN116 3.4 52.7 1.0 C C:ASN156 3.4 46.8 1.0 O C:GLN116 3.5 43.5 1.0 CB C:ASP152 3.5 65.2 1.0 C C:GLN155 3.6 53.0 1.0 CA C:GLY115 3.7 50.2 1.0 N C:LEU157 3.7 45.4 1.0 CB C:LEU157 3.9 48.0 1.0 CA C:LEU157 3.9 45.0 1.0 C C:GLY115 4.1 52.1 1.0 CB C:GLN155 4.2 70.8 1.0 N C:ASN156 4.2 47.9 1.0 CA C:ASN156 4.3 47.1 1.0 CG C:GLN116 4.3 63.9 1.0 CG C:ASP152 4.4 73.8 1.0 C C:GLN116 4.4 51.4 1.0 CA C:GLN116 4.4 55.8 1.0 CA C:GLN155 4.4 59.9 1.0 CB C:ASN150 4.5 47.0 1.0 CG C:GLN155 4.5 79.5 1.0 N C:ASP152 4.7 54.9 1.0 CA C:ASP152 4.7 61.4 1.0 OD2 C:ASP152 4.8 74.7 1.0 CD1 C:LEU157 4.8 44.8 1.0 CB C:GLN116 4.9 58.0 1.0 CG C:LEU157 5.0 45.2 1.0 N C:GLN155 5.0 60.4 1.0 N C:GLY115 5.0 50.9 1.0

A.Mcpherson, A.Mcpherson. N/A N/A.
ISSN: ESSN 1090-2104
PubMed: 31983433
DOI: 10.1016/J.BBRC.2020.01.101