Calcium in PDB 6v81: The Crystal Structure of the Outer-Membrane Transporter Yncd

The structure of The Crystal Structure of the Outer-Membrane Transporter Yncd, PDB code: 6v81 was solved by R.Grinter, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	43.97 / 2.96
Space group	P 21 2 21
Cell size a, b, c (Å), α, β, γ (°)	87.940, 98.640, 124.860, 90.00, 90.00, 90.00
R / Rfree (%)	27.7 / 31.4

The binding sites of Calcium atom in the The Crystal Structure of the Outer-Membrane Transporter Yncd (pdb code 6v81). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the The Crystal Structure of the Outer-Membrane Transporter Yncd, PDB code: 6v81:

Calcium binding site 1 out of 1 in the The Crystal Structure of the Outer-Membrane Transporter Yncd


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of The Crystal Structure of the Outer-Membrane Transporter Yncd within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca802 b:57.8 occ:1.00 O A:TYR430 2.3 81.8 1.0 OD1 A:ASN435 2.5 0.6 1.0 O A:GLY436 2.5 88.4 1.0 OD2 A:ASP438 2.6 58.0 1.0 OD2 A:ASP428 2.8 74.0 1.0 OD1 A:ASP428 3.0 73.4 1.0 CG A:ASP428 3.1 64.8 1.0 CG A:ASN435 3.3 97.7 1.0 C A:TYR430 3.5 85.3 1.0 CG A:ASP438 3.5 60.4 1.0 ND2 A:ASN435 3.7 99.7 1.0 C A:GLY436 3.7 81.1 1.0 N A:ASP438 3.9 73.2 1.0 CB A:ASP438 4.0 74.2 1.0 NH2 A:ARG536 4.1 73.7 1.0 CB A:TYR430 4.2 62.1 1.0 O A:ASN435 4.3 63.1 1.0 CA A:TYR430 4.3 76.6 1.0 C A:ASN435 4.4 72.8 1.0 CA A:ASP437 4.5 66.0 1.0 CB A:ASN435 4.5 79.3 1.0 OD1 A:ASP438 4.5 62.4 1.0 N A:VAL431 4.5 74.4 1.0 CB A:ASP428 4.5 68.4 1.0 N A:GLY436 4.5 74.8 1.0 N A:ASP437 4.5 66.6 1.0 N A:TYR430 4.6 79.1 1.0 CD1 A:TYR430 4.6 64.4 1.0 CA A:ASP438 4.6 74.7 1.0 CA A:VAL431 4.7 62.7 1.0 C A:ASP437 4.7 72.8 1.0 CG2 A:VAL431 4.7 63.1 1.0 CA A:GLY436 4.7 90.6 1.0 CG A:TYR430 4.9 60.5 1.0 CA A:ASN435 5.0 80.2 1.0

R.Grinter, T.Lithgow. The Crystal Structure of Yncd Reveals A Positively Charged Substrate Binding Pocket. To Be Published.