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Calcium in PDB 6v89: Human CTBP1 (28-375) in Complex with Amp

Protein crystallography data

The structure of Human CTBP1 (28-375) in Complex with Amp, PDB code: 6v89 was solved by W.E.Royer, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 36.14 / 2.45
Space group P 64 2 2
Cell size a, b, c (Å), α, β, γ (°) 88.944, 88.944, 163.72, 90, 90, 120
R / Rfree (%) 23.1 / 27.4

Other elements in 6v89:

The structure of Human CTBP1 (28-375) in Complex with Amp also contains other interesting chemical elements:

Chlorine (Cl) 2 atoms

Calcium Binding Sites:

The binding sites of Calcium atom in the Human CTBP1 (28-375) in Complex with Amp (pdb code 6v89). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Human CTBP1 (28-375) in Complex with Amp, PDB code: 6v89:

Calcium binding site 1 out of 1 in 6v89

Go back to Calcium Binding Sites List in 6v89
Calcium binding site 1 out of 1 in the Human CTBP1 (28-375) in Complex with Amp


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Human CTBP1 (28-375) in Complex with Amp within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca504

b:55.0
occ:1.00
O A:HOH713 2.4 38.9 1.0
O A:HOH620 2.5 57.1 1.0
O A:HOH607 2.6 41.9 1.0
O A:HOH651 2.7 36.6 1.0
O A:HOH672 2.7 34.7 1.0
O A:HOH657 2.7 43.4 1.0
O A:HOH715 3.3 52.4 1.0
NH2 A:ARG285 3.9 67.5 1.0
O A:GLY258 4.2 41.9 1.0
OE1 A:GLU175 4.6 37.3 1.0
OD1 A:ASP231 4.6 43.3 1.0
OE2 A:GLU175 4.7 38.1 1.0
NE A:ARG285 4.7 62.2 1.0
CZ A:ARG285 4.8 65.8 1.0
O A:GLN257 4.8 46.8 1.0
O A:HOH615 4.9 62.4 1.0

Reference:

J.C.Nichols, C.A.Schiffer, W.E.Royer. Nad(H) Phosphates Mediate Tetramer Assembly of Human C-Terminal Binding Protein (Ctbp) J.Biol.Chem. 2021.
ISSN: ESSN 1083-351X
Page generated: Tue Jul 16 16:35:27 2024

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