Calcium in PDB 6v8r: Proteinase K Determined By Microed Phased By ARCIMBOLDO_SHREDDER

All present enzymatic activity of Proteinase K Determined By Microed Phased By ARCIMBOLDO_SHREDDER:
3.4.21.64;

The binding sites of Calcium atom in the Proteinase K Determined By Microed Phased By ARCIMBOLDO_SHREDDER (pdb code 6v8r). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Proteinase K Determined By Microed Phased By ARCIMBOLDO_SHREDDER, PDB code: 6v8r:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in the Proteinase K Determined By Microed Phased By ARCIMBOLDO_SHREDDER


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Proteinase K Determined By Microed Phased By ARCIMBOLDO_SHREDDER within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca301 b:19.7 occ:1.00 ND1 A:HIS72 2.2 15.6 1.0 SG A:CYS73 2.5 19.4 1.0 O A:HOH498 2.7 13.1 1.0 O A:HOH401 2.7 10.9 0.8 SD A:MET225 2.9 26.2 1.0 N A:CYS73 3.0 11.8 1.0 CG A:HIS72 3.1 16.1 1.0 CA A:CYS73 3.2 11.6 1.0 CE1 A:HIS72 3.2 11.8 1.0 C A:HIS72 3.3 12.4 1.0 CB A:HIS72 3.4 9.0 1.0 CB A:CYS73 3.5 16.6 1.0 O A:HIS72 3.7 11.3 1.0 O A:HIS69 4.0 13.1 1.0 CA A:HIS72 4.0 14.2 1.0 O A:HOH401 4.1 16.3 0.2 CA A:MET225 4.2 17.4 1.0 CG A:MET225 4.3 28.1 1.0 CD2 A:HIS72 4.3 12.8 1.0 CE A:MET225 4.3 34.0 1.0 NE2 A:HIS72 4.3 13.7 1.0 CB A:MET225 4.4 18.4 1.0 O A:SER224 4.5 21.1 1.0 CD1 A:ILE220 4.6 28.3 1.0 CG A:PRO228 4.6 13.5 1.0 OG1 A:THR76 4.7 15.2 1.0 C A:CYS73 4.7 12.2 1.0 CE1 A:HIS69 4.7 35.4 1.0 ND1 A:HIS69 4.7 30.4 1.0 OG A:SER224 4.7 43.1 1.0 N A:MET225 4.8 16.1 1.0 C A:SER224 4.9 18.4 1.0 CG1 A:ILE220 4.9 19.5 1.0 N A:HIS72 4.9 13.0 1.0

Calcium binding site 2 out of 2 in the Proteinase K Determined By Microed Phased By ARCIMBOLDO_SHREDDER


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Proteinase K Determined By Microed Phased By ARCIMBOLDO_SHREDDER within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca302 b:32.5 occ:1.00 O A:VAL177 2.4 17.4 1.0 O A:PRO175 2.4 20.8 1.0 OD2 A:ASP200 2.4 19.8 1.0 O A:HOH466 2.5 19.0 1.0 O A:HOH510 2.7 23.0 1.0 OD1 A:ASP200 2.7 20.2 1.0 O A:HOH425 2.7 16.0 1.0 O A:HOH496 2.8 22.1 1.0 CG A:ASP200 2.9 19.4 1.0 C A:PRO175 3.4 16.4 1.0 C A:VAL177 3.6 20.5 1.0 CA A:PRO175 4.0 22.2 1.0 N A:VAL177 4.1 20.6 1.0 O A:VAL198 4.3 19.1 1.0 O A:GLU174 4.3 20.5 1.0 CB A:ASP200 4.3 17.7 1.0 N A:SER176 4.3 13.4 1.0 C A:SER176 4.4 14.6 1.0 CA A:CYS178 4.5 18.6 1.0 N A:CYS178 4.5 17.4 1.0 N A:THR179 4.5 14.6 1.0 CA A:VAL177 4.5 15.4 1.0 CA A:SER176 4.6 18.9 1.0 SG A:CYS249 4.7 26.2 1.0 OG1 A:THR179 4.7 20.0 1.0 O A:HOH477 4.8 21.1 1.0 O A:SER176 5.0 18.2 1.0

L.R.Richards, C.Millan, J.Miao, M.W.Martynowycz, M.R.Sawaya, T.Gonen, R.J.Borges, I.Uson, J.A.Rodriguez. Fragment-Based Determination of A Proteinase K Structure From Microed Data Using ARCIMBOLDO_SHREDDER Acta Crystallogr.,Sect.D V. 76 703 2020.
ISSN: ESSN 1399-0047
DOI: 10.1107/S2059798320008049