Calcium in PDB 6vbv: Structure of the Bovine Bbsome:ARL6:Gtp Complex

The binding sites of Calcium atom in the Structure of the Bovine Bbsome:ARL6:Gtp Complex (pdb code 6vbv). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Structure of the Bovine Bbsome:ARL6:Gtp Complex, PDB code: 6vbv:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in the Structure of the Bovine Bbsome:ARL6:Gtp Complex


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Structure of the Bovine Bbsome:ARL6:Gtp Complex within 5.0Å range: probe atom residue distance (Å) B Occ 2:Ca800 b:70.9 occ:1.00 OE1 2:GLU259 2.3 60.6 1.0 OE2 2:GLU259 2.4 60.6 1.0 O 2:VAL257 2.4 67.2 1.0 OD1 2:ASN253 2.5 70.1 1.0 CD 2:GLU259 2.5 60.6 1.0 OD2 2:ASP255 2.8 71.3 1.0 OD1 2:ASP251 2.8 66.2 1.0 OD1 2:ASP255 2.8 71.3 1.0 CG 2:ASP255 2.9 71.3 1.0 CG 2:ASN253 3.2 70.1 1.0 ND2 2:ASN253 3.4 70.1 1.0 C 2:VAL257 3.6 67.2 1.0 CG2 2:VAL257 3.8 67.2 1.0 CG 2:GLU259 3.9 60.6 1.0 CG 2:ASP251 4.0 66.2 1.0 CB 2:ASP255 4.0 71.3 1.0 N 2:VAL257 4.1 67.2 1.0 N 2:ASP255 4.1 71.3 1.0 CA 2:VAL257 4.3 67.2 1.0 CA 2:ASP251 4.4 66.2 1.0 N 2:ASN253 4.4 70.1 1.0 CB 2:ASN253 4.5 70.1 1.0 CA 2:ASP255 4.6 71.3 1.0 N 2:CYS258 4.6 61.8 1.0 C 2:CYS258 4.6 61.8 1.0 CB 2:VAL257 4.6 67.2 1.0 C 2:ASP251 4.6 66.2 1.0 N 2:SER254 4.7 69.9 1.0 N 2:LEU252 4.7 65.6 1.0 N 2:GLY256 4.7 70.7 1.0 CA 2:CYS258 4.7 61.8 1.0 N 2:GLU259 4.8 60.6 1.0 CA 2:ASN253 4.8 70.1 1.0 CB 2:GLU259 4.8 60.6 1.0 OD2 2:ASP251 4.8 66.2 1.0 C 2:ASP255 4.8 71.3 1.0 CB 2:ASP251 4.8 66.2 1.0 O 2:CYS258 4.8 61.8 1.0 C 2:ASN253 5.0 70.1 1.0

Calcium binding site 2 out of 2 in the Structure of the Bovine Bbsome:ARL6:Gtp Complex


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Structure of the Bovine Bbsome:ARL6:Gtp Complex within 5.0Å range: probe atom residue distance (Å) B Occ 2:Ca801 b:66.0 occ:1.00 O 2:LYS176 2.2 67.1 1.0 OE2 2:GLU178 2.5 58.2 1.0 OD2 2:ASP174 2.5 71.6 1.0 OD2 2:ASP170 2.5 65.5 1.0 OE1 2:GLU178 2.5 58.2 1.0 CD 2:GLU178 2.8 58.2 1.0 CG 2:ASP170 3.2 65.5 1.0 CG 2:ASP174 3.3 71.6 1.0 C 2:LYS176 3.4 67.1 1.0 OD1 2:ASP172 3.4 69.8 1.0 O 2:PHE171 3.4 63.7 1.0 OD1 2:ASP170 3.7 65.5 1.0 OD1 2:ASP174 3.8 71.6 1.0 N 2:LYS176 3.9 67.1 1.0 N 2:ASP174 3.9 71.6 1.0 CA 2:ASP170 4.2 65.5 1.0 CA 2:LYS176 4.2 67.1 1.0 CB 2:ASP170 4.2 65.5 1.0 CG 2:GLU178 4.2 58.2 1.0 CG 2:ASP172 4.2 69.8 1.0 N 2:GLU178 4.3 58.2 1.0 N 2:LYS177 4.3 58.8 1.0 CA 2:LYS177 4.3 58.8 1.0 C 2:ASP170 4.4 65.5 1.0 CB 2:ASP174 4.4 71.6 1.0 N 2:GLY175 4.4 70.7 1.0 CA 2:ASP174 4.4 71.6 1.0 C 2:ASP174 4.5 71.6 1.0 C 2:PHE171 4.5 63.7 1.0 C 2:LYS177 4.6 58.8 1.0 CB 2:LYS176 4.6 67.1 1.0 N 2:PHE171 4.7 63.7 1.0 O 2:ASP170 4.7 65.5 1.0 N 2:GLY173 4.9 71.3 1.0 OD2 2:ASP172 4.9 69.8 1.0 C 2:GLY175 4.9 70.7 1.0 CB 2:ASP172 5.0 69.8 1.0

S.K.Singh, M.Gui, F.Koh, M.C.Yip, A.Brown. Structure and Activation Mechanism of the Bbsome Membrane Protein Trafficking Complex. Elife V. 9 2020.
ISSN: ESSN 2050-084X
PubMed: 31939736
DOI: 10.7554/ELIFE.53322