Calcium in PDB 6vfq: Crystal Structure of Monomeric Human Protocadherin 10 EC1-EC4

The structure of Crystal Structure of Monomeric Human Protocadherin 10 EC1-EC4, PDB code: 6vfq was solved by O.J.Harrison, J.Brasch, L.Shapiro, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	19.93 / 2.30
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	26.373, 78.910, 238.886, 90.00, 90.00, 90.00
R / Rfree (%)	18.8 / 23.7

The binding sites of Calcium atom in the Crystal Structure of Monomeric Human Protocadherin 10 EC1-EC4 (pdb code 6vfq). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 9 binding sites of Calcium where determined in the Crystal Structure of Monomeric Human Protocadherin 10 EC1-EC4, PDB code: 6vfq:
Jump to Calcium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9;

Calcium binding site 1 out of 9 in the Crystal Structure of Monomeric Human Protocadherin 10 EC1-EC4


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of Monomeric Human Protocadherin 10 EC1-EC4 within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca501 b:42.7 occ:1.00 OD2 A:ASP100 2.2 40.3 1.0 OD1 A:ASP63 2.3 47.5 1.0 OE2 A:GLU65 2.3 45.3 1.0 O A:HOH673 2.4 38.0 1.0 OE1 A:GLU9 2.4 42.9 1.0 OE1 A:GLU10 2.5 51.6 1.0 CG A:ASP100 3.3 44.6 1.0 CG A:ASP63 3.3 55.8 1.0 CD A:GLU9 3.4 43.9 1.0 HA A:ASP63 3.4 52.4 1.0 H A:GLU65 3.4 51.2 1.0 CD A:GLU65 3.5 50.8 1.0 CD A:GLU10 3.6 48.5 1.0 HD21 A:ASN101 3.6 48.4 1.0 OD1 A:ASP100 3.6 41.4 1.0 H A:ARG64 3.7 44.0 1.0 HG3 A:GLU10 3.8 59.4 1.0 HB2 A:GLU65 3.8 54.2 1.0 HG2 A:GLU10 3.8 59.4 1.0 OE2 A:GLU9 3.8 46.6 1.0 CA A:CA502 3.9 39.6 1.0 CG A:GLU10 4.0 49.5 1.0 OD2 A:ASP63 4.1 57.4 1.0 CA A:ASP63 4.1 43.7 1.0 CB A:ASP63 4.1 44.3 1.0 N A:ARG64 4.2 36.6 1.0 O A:HOH635 4.2 45.9 1.0 HB2 A:ASP63 4.3 53.2 1.0 N A:GLU65 4.3 42.7 1.0 OE1 A:GLU65 4.3 46.4 1.0 ND2 A:ASN101 4.3 40.3 1.0 CG A:GLU65 4.4 46.1 1.0 C A:ASP63 4.5 38.6 1.0 CB A:GLU65 4.5 45.2 1.0 HG2 A:GLU65 4.5 55.4 1.0 HD22 A:ASN101 4.5 48.4 1.0 CB A:ASP100 4.6 39.8 1.0 HB2 A:ASP100 4.6 47.7 1.0 CG A:GLU9 4.6 48.1 1.0 HG3 A:GLU9 4.6 57.7 1.0 OE2 A:GLU10 4.6 49.4 1.0 HB2 A:GLU9 4.6 47.7 1.0 HB3 A:ARG64 4.7 49.7 1.0 O A:HOH726 4.7 55.0 1.0 HB3 A:ASP100 5.0 47.7 1.0

Calcium binding site 2 out of 9 in the Crystal Structure of Monomeric Human Protocadherin 10 EC1-EC4


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Crystal Structure of Monomeric Human Protocadherin 10 EC1-EC4 within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca502 b:39.6 occ:1.00 OD1 A:ASP97 2.2 33.4 1.0 OD1 A:ASP100 2.2 41.4 1.0 O A:ILE98 2.4 37.4 1.0 OE2 A:GLU9 2.4 46.6 1.0 OD1 A:ASP133 2.4 42.0 1.0 OE1 A:GLU65 2.5 46.4 1.0 OE2 A:GLU65 2.6 45.3 1.0 CD A:GLU65 2.8 50.8 1.0 H A:ASP100 3.2 48.0 1.0 HD22 A:ASN101 3.3 48.4 1.0 CG A:ASP100 3.3 44.6 1.0 H A:ILE98 3.3 47.0 1.0 CG A:ASP133 3.4 43.9 1.0 CG A:ASP97 3.4 43.5 1.0 CD A:GLU9 3.4 43.9 1.0 C A:ILE98 3.5 42.5 1.0 HA A:ASP133 3.7 54.3 1.0 HE A:ARG64 3.7 67.1 1.0 OE1 A:GLU9 3.7 42.9 1.0 OD2 A:ASP100 3.7 40.3 1.0 HG13 A:ILE98 3.8 60.6 1.0 N A:ILE98 3.8 39.1 1.0 HD21 A:ASN101 3.8 48.4 1.0 HB3 A:ASP133 3.9 48.6 1.0 ND2 A:ASN101 3.9 40.3 1.0 CA A:CA501 3.9 42.7 1.0 HH21 A:ARG64 4.0 60.9 1.0 CB A:ASP133 4.1 40.5 1.0 OD2 A:ASP97 4.1 34.0 1.0 N A:ASP100 4.1 40.0 1.0 HA A:ASP97 4.1 50.1 1.0 HG12 A:ILE98 4.2 60.6 1.0 CG A:GLU65 4.2 46.1 1.0 OD2 A:ASP133 4.2 40.5 1.0 CA A:ILE98 4.3 45.9 1.0 HA A:ASN99 4.3 50.7 1.0 HB3 A:ARG64 4.3 49.7 1.0 CA A:ASP133 4.4 45.2 1.0 HG2 A:GLU65 4.4 55.4 1.0 CG1 A:ILE98 4.4 50.5 1.0 CB A:ASP97 4.5 35.8 1.0 HG3 A:GLU65 4.5 55.4 1.0 N A:ASN99 4.6 43.9 1.0 NE A:ARG64 4.6 55.9 1.0 CB A:ASP100 4.6 39.8 1.0 C A:ASP97 4.6 39.1 1.0 CA A:ASP97 4.6 41.8 1.0 CG A:GLU9 4.7 48.1 1.0 HG2 A:GLU9 4.7 57.7 1.0 HB2 A:ASP97 4.8 43.0 1.0 H A:GLU65 4.8 51.2 1.0 NH2 A:ARG64 4.8 50.7 1.0 CA A:ASN99 4.8 42.2 1.0 CA A:ASP100 4.8 45.0 1.0 H A:ASN101 4.9 50.0 1.0 HB3 A:ASP100 5.0 47.7 1.0 HB2 A:ASP133 5.0 48.6 1.0 C A:ASN99 5.0 41.2 1.0

Calcium binding site 3 out of 9 in the Crystal Structure of Monomeric Human Protocadherin 10 EC1-EC4


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Crystal Structure of Monomeric Human Protocadherin 10 EC1-EC4 within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca503 b:39.7 occ:1.00 O A:ASN101 2.3 38.8 1.0 O A:ASN137 2.3 39.2 1.0 OD2 A:ASP131 2.4 41.2 1.0 OD1 A:ASN99 2.4 39.8 1.0 OD2 A:ASP133 2.5 40.5 1.0 OD2 A:ASP188 2.5 43.4 1.0 OD1 A:ASP131 2.5 42.6 1.0 CG A:ASP131 2.8 44.2 1.0 HB2 A:ASP133 3.0 48.6 1.0 CG A:ASP133 3.4 43.9 1.0 CG A:ASP188 3.4 46.0 1.0 HB3 A:ASP188 3.5 57.8 1.0 C A:ASN101 3.5 44.3 1.0 C A:ASN137 3.6 41.6 1.0 CG A:ASN99 3.6 45.9 1.0 HB2 A:ASP188 3.6 57.8 1.0 H A:ASN101 3.6 50.0 1.0 CB A:ASP133 3.6 40.5 1.0 HB3 A:ASN137 3.7 45.6 1.0 CB A:ASP188 3.7 48.1 1.0 HA A:SER138 3.8 56.7 1.0 HB2 A:ASN101 3.9 50.5 1.0 HD3 A:PRO103 3.9 54.2 1.0 HD21 A:ASN99 4.0 46.0 1.0 H A:ASP133 4.0 44.1 1.0 HA A:PRO102 4.0 52.0 1.0 HA A:ASN99 4.1 50.7 1.0 HB3 A:ASP133 4.2 48.6 1.0 HB2 A:ARG213 4.2 51.2 1.0 ND2 A:ASN99 4.2 38.4 1.0 HD3 A:ARG213 4.2 64.2 1.0 CB A:ASP131 4.3 40.6 1.0 N A:ASN101 4.3 41.7 1.0 CA A:ASN101 4.3 40.2 1.0 HA A:ASN137 4.4 52.9 1.0 CA A:ASN137 4.4 44.1 1.0 CB A:ASN137 4.5 38.0 1.0 N A:PRO102 4.5 41.4 1.0 N A:SER138 4.5 39.0 1.0 CA A:PRO102 4.5 43.4 1.0 OD1 A:ASP188 4.5 43.6 1.0 OD1 A:ASP133 4.5 42.0 1.0 CA A:SER138 4.6 47.2 1.0 CB A:ASN101 4.6 42.1 1.0 HB3 A:ASP131 4.6 48.7 1.0 C A:PRO102 4.6 38.2 1.0 HB2 A:ASP131 4.7 48.7 1.0 HD2 A:PRO132 4.7 49.0 1.0 CD A:PRO103 4.7 45.1 1.0 N A:ASP133 4.7 36.8 1.0 CB A:ASN99 4.8 39.9 1.0 CA A:ASN99 4.8 42.2 1.0 CA A:ASP133 4.8 45.2 1.0 N A:PRO103 4.8 40.8 1.0 HB3 A:ASN101 4.9 50.5 1.0 HB2 A:ASN137 4.9 45.6 1.0 HG3 A:ARG213 4.9 68.1 1.0 CD A:ARG213 4.9 53.5 1.0 HD2 A:ARG213 5.0 64.2 1.0

Calcium binding site 4 out of 9 in the Crystal Structure of Monomeric Human Protocadherin 10 EC1-EC4


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of Crystal Structure of Monomeric Human Protocadherin 10 EC1-EC4 within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca504 b:39.1 occ:1.00 OD2 A:ASP228 2.3 40.9 1.0 OD1 A:ASP173 2.3 35.0 1.0 O A:HOH619 2.3 37.3 1.0 OE1 A:GLU116 2.3 38.4 1.0 O A:HOH679 2.4 40.0 1.0 OE2 A:GLU175 2.4 35.7 1.0 CG A:ASP228 3.2 42.4 1.0 CD A:GLU116 3.2 40.1 1.0 OD1 A:ASP228 3.3 36.0 1.0 HA A:ASP173 3.4 46.5 1.0 CG A:ASP173 3.4 45.7 1.0 H A:GLU175 3.5 44.7 1.0 HB2 A:GLU175 3.6 44.3 1.0 CD A:GLU175 3.6 36.5 1.0 HD21 A:ASN229 3.6 48.5 1.0 OE2 A:GLU116 3.7 39.4 1.0 H A:ARG174 3.8 41.7 1.0 CA A:CA505 4.0 35.2 1.0 CA A:ASP173 4.1 38.8 1.0 O A:HOH651 4.1 42.8 1.0 N A:ARG174 4.2 34.7 1.0 CB A:ASP173 4.2 42.2 1.0 ND2 A:ASN229 4.2 40.4 1.0 OD2 A:ASP173 4.3 46.3 1.0 HG3 A:GLU116 4.3 47.7 1.0 HD22 A:ASN229 4.3 48.5 1.0 O A:HOH641 4.4 52.2 1.0 CG A:GLU116 4.4 39.8 1.0 CB A:GLU175 4.4 36.9 1.0 N A:GLU175 4.4 37.3 1.0 HB2 A:ASP173 4.4 50.7 1.0 CG A:GLU175 4.4 40.8 1.0 C A:ASP173 4.5 38.2 1.0 O A:HOH621 4.5 48.4 1.0 OE1 A:GLU175 4.5 36.5 1.0 HB2 A:GLU116 4.5 43.8 1.0 CB A:ASP228 4.5 35.9 1.0 HG2 A:GLU175 4.6 48.9 1.0 HB2 A:ASP228 4.6 43.1 1.0 HB3 A:ARG174 4.7 39.4 1.0 HB3 A:ASP228 5.0 43.1 1.0

Calcium binding site 5 out of 9 in the Crystal Structure of Monomeric Human Protocadherin 10 EC1-EC4


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 5 of Crystal Structure of Monomeric Human Protocadherin 10 EC1-EC4 within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca505 b:35.2 occ:1.00 OD1 A:ASP225 2.2 35.5 1.0 OD1 A:ASP228 2.3 36.0 1.0 OD1 A:ASP261 2.3 37.2 1.0 OE2 A:GLU116 2.3 39.4 1.0 OE1 A:GLU175 2.4 36.5 1.0 O A:SER226 2.4 32.8 1.0 OE2 A:GLU175 2.5 35.7 1.0 CD A:GLU175 2.7 36.5 1.0 H A:SER226 3.3 47.2 0.5 H A:SER226 3.3 47.2 0.5 H A:ASP228 3.3 45.4 1.0 CD A:GLU116 3.4 40.1 1.0 HD22 A:ASN229 3.4 48.5 1.0 CG A:ASP225 3.4 41.2 1.0 CG A:ASP261 3.4 38.9 1.0 CG A:ASP228 3.4 42.4 1.0 HE A:ARG174 3.5 50.8 1.0 HA A:ASP261 3.5 49.7 1.0 C A:SER226 3.6 39.4 1.0 OE1 A:GLU116 3.7 38.4 1.0 N A:SER226 3.8 39.3 1.0 HA A:ASP225 3.9 45.2 1.0 OD2 A:ASP225 3.9 39.1 1.0 OD2 A:ASP228 3.9 40.9 1.0 HB3 A:ASP261 4.0 45.1 1.0 CA A:CA504 4.0 39.1 1.0 ND2 A:ASN229 4.0 40.4 1.0 HH21 A:ARG174 4.1 46.4 1.0 HD21 A:ASN229 4.1 48.5 1.0 CB A:ASP261 4.1 37.6 1.0 HB3 A:ARG174 4.1 39.4 1.0 N A:ASP228 4.2 37.8 1.0 CG A:GLU175 4.2 40.8 1.0 OD2 A:ASP261 4.2 35.0 1.0 CA A:ASP261 4.3 41.4 1.0 HA A:ASN227 4.3 42.2 1.0 CA A:SER226 4.3 48.0 0.5 CA A:SER226 4.3 46.0 0.5 OG A:SER226 4.3 40.3 0.5 NE A:ARG174 4.4 42.3 1.0 HG2 A:GLU175 4.4 48.9 1.0 HB2 A:SER226 4.5 52.6 0.5 CB A:ASP225 4.5 42.3 1.0 CA A:ASP225 4.5 37.7 1.0 HG3 A:GLU175 4.6 48.9 1.0 H A:ASN229 4.6 46.4 1.0 H A:GLU262 4.6 48.4 1.0 CB A:ASP228 4.6 35.9 1.0 N A:ASN227 4.6 38.0 1.0 C A:ASP225 4.6 40.1 1.0 CG A:GLU116 4.7 39.8 1.0 HG2 A:GLU116 4.7 47.7 1.0 H A:GLU175 4.8 44.7 1.0 NH2 A:ARG174 4.8 38.7 1.0 CA A:ASN227 4.8 35.1 1.0 HB2 A:ASP225 4.9 50.7 1.0 CA A:ASP228 4.9 36.8 1.0 HB3 A:ASP228 4.9 43.1 1.0 CB A:SER226 5.0 42.8 0.5 O A:HOH679 5.0 40.0 1.0 CB A:SER226 5.0 43.9 0.5 HG3 A:GLU116 5.0 47.7 1.0 HD3 A:ARG174 5.0 49.2 1.0 HG A:SER226 5.0 48.3 0.5

Calcium binding site 6 out of 9 in the Crystal Structure of Monomeric Human Protocadherin 10 EC1-EC4


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 6 of Crystal Structure of Monomeric Human Protocadherin 10 EC1-EC4 within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca506 b:35.8 occ:1.00 O A:ASN229 2.4 37.4 1.0 OD1 A:ASN227 2.4 35.9 1.0 OD2 A:ASP315 2.4 38.7 1.0 OD2 A:ASP261 2.4 35.0 1.0 O A:ASN265 2.4 36.2 1.0 OD2 A:ASP259 2.4 37.7 1.0 OD1 A:ASP259 2.5 40.7 1.0 CG A:ASP259 2.9 39.5 1.0 HB2 A:ASP261 3.1 45.1 1.0 CG A:ASP315 3.3 38.8 1.0 CG A:ASP261 3.4 38.9 1.0 CG A:ASN227 3.5 40.8 1.0 C A:ASN229 3.6 40.6 1.0 C A:ASN265 3.6 36.3 1.0 H A:ASN229 3.7 46.4 1.0 HB3 A:ASP315 3.7 44.7 1.0 CB A:ASP261 3.7 37.6 1.0 HA2 A:GLY266 3.8 52.1 1.0 HB3 A:ASN265 3.8 44.2 1.0 HD3 A:PRO231 3.8 47.4 1.0 HB2 A:ASN229 3.8 41.4 1.0 HD21 A:ASN227 3.9 49.0 1.0 CB A:ASP315 3.9 37.2 1.0 HB2 A:ASP315 4.0 44.7 1.0 HA A:ASN227 4.1 42.2 1.0 OD1 A:ASP315 4.2 35.7 1.0 ND2 A:ASN227 4.2 40.8 1.0 O A:HOH668 4.2 40.9 1.0 HB3 A:ASP261 4.2 45.1 1.0 H A:ASP261 4.2 42.3 1.0 HA A:VAL230 4.2 45.2 1.0 HA A:ASN265 4.3 45.3 1.0 N A:ASN229 4.3 38.7 1.0 CA A:ASN229 4.3 33.8 1.0 CB A:ASP259 4.4 37.6 1.0 CA A:ASN265 4.4 37.8 1.0 CB A:ASN229 4.5 34.5 1.0 OD1 A:ASP261 4.5 37.2 1.0 N A:GLY266 4.5 32.3 1.0 CB A:ASN265 4.5 36.8 1.0 N A:VAL230 4.6 37.7 1.0 CA A:GLY266 4.6 43.4 1.0 HG3 A:PRO231 4.7 45.1 1.0 HB3 A:ASN229 4.7 41.4 1.0 HB3 A:ASP259 4.7 45.1 1.0 CD A:PRO231 4.7 39.5 1.0 HB2 A:ASP259 4.7 45.1 1.0 CB A:ASN227 4.8 38.1 1.0 CA A:ASN227 4.8 35.1 1.0 CA A:VAL230 4.8 37.7 1.0 C A:ASN227 4.9 37.6 1.0 N A:ASP261 4.9 35.3 1.0 CA A:ASP261 5.0 41.4 1.0 HB2 A:ASN265 5.0 44.2 1.0

Calcium binding site 7 out of 9 in the Crystal Structure of Monomeric Human Protocadherin 10 EC1-EC4


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 7 of Crystal Structure of Monomeric Human Protocadherin 10 EC1-EC4 within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca507 b:51.9 occ:1.00 OE1 A:GLU302 2.3 52.5 1.0 OD2 A:ASP336 2.3 50.0 1.0 O A:HOH707 2.4 49.0 1.0 OD1 A:ASP300 2.4 56.9 1.0 OE1 A:GLU244 2.4 46.2 1.0 O A:HOH646 2.5 61.6 1.0 CG A:ASP336 3.2 48.0 1.0 CG A:ASP300 3.3 58.0 1.0 OD1 A:ASP336 3.4 44.9 1.0 H A:GLU302 3.4 61.1 1.0 CD A:GLU244 3.5 48.8 1.0 CD A:GLU302 3.5 47.7 1.0 HA A:ASP300 3.6 64.8 1.0 HB2 A:GLU302 3.6 70.5 1.0 HD21 A:ASN337 3.7 56.3 1.0 H A:TYR301 3.9 63.3 1.0 OE2 A:GLU244 4.0 48.0 1.0 CA A:CA508 4.0 41.6 1.0 OD2 A:ASP300 4.0 59.2 1.0 HD21 A:ASN245 4.1 58.8 1.0 CB A:ASP300 4.2 58.6 1.0 CA A:ASP300 4.3 54.0 1.0 N A:TYR301 4.3 52.8 1.0 N A:GLU302 4.3 51.0 1.0 OE2 A:GLU302 4.3 48.4 1.0 HB2 A:ASP300 4.3 70.4 1.0 ND2 A:ASN337 4.3 46.9 1.0 CB A:GLU302 4.4 58.8 1.0 CG A:GLU302 4.4 48.8 1.0 HB3 A:TYR301 4.4 63.7 1.0 HD22 A:ASN337 4.5 56.3 1.0 CB A:ASP336 4.5 48.3 1.0 OD1 A:ASN245 4.6 56.1 1.0 HB2 A:ASP336 4.6 58.0 1.0 C A:ASP300 4.6 51.7 1.0 HG3 A:GLU244 4.6 60.6 1.0 CG A:GLU244 4.6 50.5 1.0 HB2 A:GLU244 4.6 61.3 1.0 HG2 A:GLU302 4.7 58.5 1.0 ND2 A:ASN245 4.8 49.0 1.0 HB3 A:ASP336 5.0 58.0 1.0

Calcium binding site 8 out of 9 in the Crystal Structure of Monomeric Human Protocadherin 10 EC1-EC4


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 8 of Crystal Structure of Monomeric Human Protocadherin 10 EC1-EC4 within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca508 b:41.6 occ:1.00 OD1 A:ASP336 2.3 44.9 1.0 OE2 A:GLU302 2.3 48.4 1.0 OD1 A:ASP333 2.4 43.7 1.0 OE2 A:GLU244 2.4 48.0 1.0 O A:ALA334 2.4 42.4 1.0 OD1 A:ASP369 2.4 46.9 1.0 OE1 A:GLU302 2.7 52.5 1.0 CD A:GLU302 2.8 47.7 1.0 H A:ALA334 3.2 55.7 1.0 H A:ASP336 3.2 55.7 1.0 CD A:GLU244 3.3 48.8 1.0 CG A:ASP336 3.4 48.0 1.0 HD22 A:ASN337 3.5 56.3 1.0 C A:ALA334 3.5 45.0 1.0 CG A:ASP369 3.5 49.5 1.0 OE1 A:GLU244 3.5 46.2 1.0 CG A:ASP333 3.6 53.4 1.0 N A:ALA334 3.8 46.4 1.0 HB3 A:TYR301 3.8 63.7 1.0 OD2 A:ASP336 3.9 50.0 1.0 HA A:ASP369 3.9 51.3 1.0 CA A:CA507 4.0 51.9 1.0 HA A:ASP333 4.0 57.8 1.0 HD21 A:ASN337 4.1 56.3 1.0 N A:ASP336 4.1 46.4 1.0 ND2 A:ASN337 4.1 46.9 1.0 HB3 A:ASP369 4.2 53.5 1.0 CA A:ALA334 4.2 50.5 1.0 HA A:ASN335 4.2 53.4 1.0 CG A:GLU302 4.3 48.8 1.0 CB A:ASP369 4.3 44.6 1.0 HB3 A:ALA334 4.3 48.8 1.0 OD2 A:ASP333 4.3 53.2 1.0 OD2 A:ASP369 4.4 40.8 1.0 HD1 A:TYR301 4.4 61.2 1.0 HG2 A:GLU302 4.5 58.5 1.0 CB A:ASP333 4.5 51.9 1.0 N A:ASN335 4.5 43.5 1.0 C A:ASP333 4.6 43.4 1.0 CA A:ASP333 4.6 48.2 1.0 HG3 A:GLU302 4.6 58.5 1.0 CA A:ASP369 4.6 42.7 1.0 CB A:ASP336 4.6 48.3 1.0 H A:GLU302 4.6 61.1 1.0 CG A:GLU244 4.7 50.5 1.0 CB A:TYR301 4.7 53.1 1.0 H A:ASN337 4.7 56.1 1.0 HB2 A:ASP333 4.8 62.2 1.0 CA A:ASN335 4.8 44.5 1.0 HG2 A:GLU244 4.8 60.6 1.0 CA A:ASP336 4.8 46.0 1.0 O A:HOH633 4.8 48.4 1.0 CB A:ALA334 4.8 40.7 1.0 HB3 A:ASP336 4.9 58.0 1.0 HB2 A:TYR301 5.0 63.7 1.0 C A:ASN335 5.0 44.9 1.0

Calcium binding site 9 out of 9 in the Crystal Structure of Monomeric Human Protocadherin 10 EC1-EC4


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 9 of Crystal Structure of Monomeric Human Protocadherin 10 EC1-EC4 within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca509 b:41.4 occ:1.00 O A:ASN337 2.3 44.6 1.0 OD1 A:ASN335 2.3 45.4 1.0 O A:ASN373 2.4 44.4 1.0 OD2 A:ASP369 2.4 40.8 1.0 OD2 A:ASP367 2.4 46.8 1.0 OD2 A:ASP420 2.5 45.6 1.0 OD1 A:ASP367 2.5 49.0 1.0 CG A:ASP367 2.8 47.7 1.0 HB2 A:ASP369 3.0 53.5 1.0 CG A:ASP420 3.4 44.4 1.0 CG A:ASP369 3.4 49.5 1.0 C A:ASN337 3.5 47.4 1.0 CG A:ASN335 3.5 48.5 1.0 H A:ASN337 3.5 56.1 1.0 C A:ASN373 3.6 46.4 1.0 HB3 A:ASP420 3.6 61.2 1.0 CB A:ASP369 3.7 44.6 1.0 HB2 A:ASP420 3.8 61.2 1.0 HB3 A:ASN373 3.8 56.9 1.0 HD3 A:PRO339 3.8 61.2 1.0 CB A:ASP420 3.8 51.0 1.0 HD21 A:ASN335 3.9 57.2 1.0 HA2 A:GLY374 3.9 63.9 1.0 HB2 A:ASN337 3.9 58.8 1.0 HD12 A:LEU426 3.9 56.8 1.0 HA A:ALA338 3.9 60.0 1.0 H A:ASP369 4.1 55.9 1.0 ND2 A:ASN335 4.1 47.6 1.0 HB3 A:ASP369 4.1 53.5 1.0 HA A:ASN335 4.1 53.4 1.0 N A:ASN337 4.2 46.8 1.0 HB2 A:LEU426 4.2 54.8 1.0 CA A:ASN337 4.3 49.2 1.0 HA A:ASN373 4.3 54.7 1.0 OD1 A:ASP420 4.3 46.3 1.0 CB A:ASP367 4.3 46.1 1.0 CA A:ASN373 4.4 45.6 1.0 N A:ALA338 4.4 43.2 1.0 CB A:ASN373 4.5 47.4 1.0 N A:GLY374 4.5 45.0 1.0 CB A:ASN337 4.5 49.0 1.0 CA A:ALA338 4.5 50.0 1.0 OD1 A:ASP369 4.5 46.9 1.0 CA A:GLY374 4.6 53.2 1.0 HB3 A:ASP367 4.7 55.3 1.0 CB A:ASN335 4.7 41.1 1.0 CD A:PRO339 4.7 51.0 1.0 HB2 A:ASP367 4.7 55.3 1.0 CA A:ASN335 4.8 44.5 1.0 N A:ASP369 4.8 46.6 1.0 HB3 A:ASN337 4.8 58.8 1.0 C A:ALA338 4.8 44.8 1.0 CD1 A:LEU426 4.8 47.3 1.0 CA A:ASP369 4.9 42.7 1.0 HB2 A:ASN373 4.9 56.9 1.0 HG3 A:PRO339 4.9 59.9 1.0 N A:PRO339 4.9 46.6 1.0 HD22 A:ASN335 5.0 57.2 1.0 C A:ASN335 5.0 44.9 1.0

O.J.Harrison, J.Brasch, P.S.Katsamba, G.Ahlsen, A.J.Noble, H.Dan, R.V.Sampogna, C.S.Potter, B.Carragher, B.Honig, L.Shapiro. Family-Wide Structural and Biophysical Analysis of Binding Interactions Among Non-Clustered Delta-Protocadherins. Cell Rep V. 30 2655 2020.
ISSN: ESSN 2211-1247
PubMed: 32101743
DOI: 10.1016/J.CELREP.2020.02.003