Calcium in PDB 6vg4: Human Protocadherin 10 Ectodomain

The structure of Human Protocadherin 10 Ectodomain, PDB code: 6vg4 was solved by O.J.Harrison, J.Brasch, L.Shapiro, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	20.00 / 3.30
Space group	P 41 21 2
Cell size a, b, c (Å), α, β, γ (°)	84.087, 84.087, 543.917, 90.00, 90.00, 90.00
R / Rfree (%)	23 / 28.4

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 15;

Binding sites:

The binding sites of Calcium atom in the Human Protocadherin 10 Ectodomain (pdb code 6vg4). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 15 binding sites of Calcium where determined in the Human Protocadherin 10 Ectodomain, PDB code: 6vg4:
Jump to Calcium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Calcium binding site 1 out of 15 in the Human Protocadherin 10 Ectodomain


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Human Protocadherin 10 Ectodomain within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca703 b:78.2 occ:1.00 OD1 A:ASP63 2.3 85.1 1.0 OD2 A:ASP100 2.3 0.5 1.0 OE1 A:GLU10 2.4 92.4 1.0 OE2 A:GLU65 2.4 66.8 1.0 OE1 A:GLU9 2.4 0.3 1.0 HD21 A:ASN101 3.3 0.1 1.0 CD A:GLU10 3.3 93.4 1.0 HG3 A:GLU10 3.3 1.0 1.0 HG2 A:GLU10 3.3 1.0 1.0 CG A:ASP100 3.3 0.5 1.0 CD A:GLU9 3.3 100.0 1.0 CG A:ASP63 3.5 98.1 1.0 CG A:GLU10 3.5 0.1 1.0 CD A:GLU65 3.6 79.6 1.0 HA A:ASP63 3.6 0.0 1.0 OD1 A:ASP100 3.7 0.7 1.0 H A:GLU65 3.7 0.9 1.0 HD22 A:ASN101 3.7 0.1 1.0 OE2 A:GLU9 3.8 0.0 1.0 ND2 A:ASN101 3.8 0.6 1.0 HB2 A:GLU65 3.8 0.2 1.0 H A:ARG64 3.9 99.3 1.0 OD2 A:ASP63 4.3 0.1 1.0 CA A:ASP63 4.3 0.2 1.0 OE1 A:GLU65 4.4 67.2 1.0 CA A:CA704 4.4 76.0 1.0 N A:ARG64 4.4 82.8 1.0 CB A:ASP63 4.4 0.6 1.0 OE2 A:GLU10 4.5 0.1 1.0 HG3 A:GLU9 4.5 0.7 1.0 CG A:GLU9 4.5 96.4 1.0 N A:GLU65 4.6 0.6 1.0 HB2 A:ASP63 4.6 0.3 1.0 CG A:GLU65 4.6 82.5 1.0 CB A:GLU65 4.6 86.8 1.0 HB2 A:ASP100 4.7 0.9 1.0 CB A:ASP100 4.7 0.3 1.0 C A:ASP63 4.7 99.0 1.0 HB2 A:GLU9 4.7 74.5 1.0 HG2 A:GLU65 4.8 99.0 1.0 HB3 A:ARG64 5.0 73.3 1.0

Calcium binding site 2 out of 15 in the Human Protocadherin 10 Ectodomain


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Human Protocadherin 10 Ectodomain within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca704 b:76.0 occ:1.00 O A:ILE98 2.3 0.8 1.0 OE2 A:GLU9 2.3 0.0 1.0 OE1 A:GLU65 2.4 67.2 1.0 OD1 A:ASP100 2.4 0.7 1.0 OD1 A:ASP97 2.4 63.1 1.0 OD1 A:ASP133 2.4 88.8 1.0 CD A:GLU65 2.9 79.6 1.0 OE2 A:GLU65 3.0 66.8 1.0 H A:ILE98 3.1 0.5 1.0 H A:ASP100 3.3 0.2 1.0 HD22 A:ASN101 3.4 0.1 1.0 CG A:ASP133 3.4 0.2 1.0 CD A:GLU9 3.4 100.0 1.0 C A:ILE98 3.5 0.4 1.0 CG A:ASP100 3.5 0.5 1.0 CG A:ASP97 3.6 93.6 1.0 N A:ILE98 3.7 0.4 1.0 HG13 A:ILE98 3.8 90.0 1.0 HG12 A:ILE98 3.8 90.0 1.0 HE A:ARG64 4.0 0.4 1.0 OE1 A:GLU9 4.0 0.3 1.0 HA A:ASP133 4.0 74.7 1.0 OD2 A:ASP100 4.1 0.5 1.0 HB3 A:ASP133 4.1 0.5 1.0 N A:ASP100 4.1 0.8 1.0 OD2 A:ASP133 4.1 0.7 1.0 HA A:ASP97 4.1 0.4 1.0 HA A:ASN99 4.2 0.8 1.0 ND2 A:ASN101 4.2 0.6 1.0 CA A:ILE98 4.2 0.2 1.0 HB2 A:ASN101 4.2 94.5 1.0 CB A:ASP133 4.2 0.2 1.0 OD2 A:ASP97 4.3 71.3 1.0 CG A:GLU65 4.3 82.5 1.0 CG1 A:ILE98 4.3 75.0 1.0 HB3 A:ARG64 4.3 73.3 1.0 CA A:CA703 4.4 78.2 1.0 HG2 A:GLU9 4.4 0.7 1.0 HG2 A:GLU65 4.4 99.0 1.0 CG A:GLU9 4.5 96.4 1.0 HG3 A:GLU65 4.5 99.0 1.0 N A:ASN99 4.5 0.2 1.0 HD21 A:ASN101 4.6 0.1 1.0 C A:ASP97 4.6 84.7 1.0 CA A:ASP133 4.6 62.2 1.0 CA A:ASP97 4.7 97.8 1.0 CB A:ASP97 4.7 0.0 1.0 CB A:ASP100 4.7 0.3 1.0 CA A:ASN99 4.7 0.8 1.0 HG3 A:GLU9 4.8 0.7 1.0 H A:ASN101 4.8 87.6 1.0 NE A:ARG64 4.8 0.8 1.0 CA A:ASP100 4.9 0.7 1.0 HD22 A:ASN137 4.9 0.1 1.0 HD3 A:ARG64 4.9 73.3 1.0 HH21 A:ARG64 4.9 1.0 1.0 CB A:ILE98 4.9 91.8 1.0 H A:GLU65 4.9 0.9 1.0 N A:ASN101 5.0 73.0 1.0 C A:ASN99 5.0 0.3 1.0

Calcium binding site 3 out of 15 in the Human Protocadherin 10 Ectodomain


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Human Protocadherin 10 Ectodomain within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca705 b:82.1 occ:1.00 OD2 A:ASP131 2.3 80.2 1.0 O A:ASN101 2.3 84.8 1.0 OD2 A:ASP133 2.4 0.7 1.0 O A:ASN137 2.4 82.0 1.0 OD2 A:ASP188 2.4 0.2 1.0 OD1 A:ASN99 2.5 0.7 1.0 OD1 A:ASP131 2.5 0.2 1.0 CG A:ASP131 2.8 98.4 1.0 HB2 A:ASP133 3.2 0.5 1.0 CG A:ASN99 3.4 0.4 1.0 CG A:ASP133 3.4 0.2 1.0 CG A:ASP188 3.4 0.2 1.0 HB3 A:ASP188 3.5 1.0 1.0 HD21 A:ASN99 3.5 0.4 1.0 HB2 A:ASP188 3.5 1.0 1.0 HB3 A:ASN137 3.6 73.5 1.0 C A:ASN101 3.6 96.8 1.0 C A:ASN137 3.7 94.0 1.0 CB A:ASP188 3.7 1.0 1.0 HA A:PRO102 3.7 0.2 1.0 CB A:ASP133 3.8 0.2 1.0 HD3 A:PRO103 3.8 0.5 1.0 ND2 A:ASN99 3.8 0.3 1.0 H A:ASN101 3.9 87.6 1.0 HA A:SER138 4.0 0.3 1.0 HA A:ASN99 4.1 0.8 1.0 H A:ASP133 4.1 72.9 1.0 HD3 A:ARG213 4.3 0.5 1.0 CB A:ASP131 4.3 1.0 1.0 HB2 A:ARG213 4.3 0.4 1.0 HB3 A:ASP133 4.3 0.5 1.0 HB2 A:ASN101 4.3 94.5 1.0 CA A:PRO102 4.4 90.2 1.0 HG3 A:ARG213 4.4 0.3 1.0 CB A:ASN137 4.4 61.3 1.0 N A:PRO102 4.4 86.1 1.0 CA A:ASN137 4.5 79.7 1.0 HA A:ASN137 4.5 95.7 1.0 CA A:ASN101 4.5 97.4 1.0 OD1 A:ASP133 4.5 88.8 1.0 OD1 A:ASP188 4.6 89.0 1.0 C A:PRO102 4.6 85.4 1.0 N A:ASN101 4.6 73.0 1.0 CD A:PRO103 4.6 88.8 1.0 HD22 A:ASN99 4.6 0.4 1.0 N A:SER138 4.6 87.1 1.0 HB2 A:ASP131 4.6 0.8 1.0 HB3 A:ASP131 4.6 0.8 1.0 CB A:ASN99 4.6 0.3 1.0 HB3 A:ASN101 4.7 94.5 1.0 CA A:SER138 4.7 84.4 1.0 CB A:ASN101 4.7 78.8 1.0 N A:PRO103 4.7 92.1 1.0 CA A:ASN99 4.8 0.8 1.0 HD2 A:PRO132 4.8 67.6 1.0 N A:ASP133 4.8 60.8 1.0 HB2 A:ASN137 4.9 73.5 1.0 CD A:ARG213 4.9 0.2 1.0 CA A:ASP133 4.9 62.2 1.0 CG A:ARG213 4.9 0.9 1.0 HD2 A:PRO103 5.0 0.5 1.0 HA A:ASP131 5.0 0.8 1.0 HD2 A:ARG213 5.0 0.5 1.0

Calcium binding site 4 out of 15 in the Human Protocadherin 10 Ectodomain


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of Human Protocadherin 10 Ectodomain within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca706 b:0.3 occ:1.00 OE1 A:GLU116 2.3 88.6 1.0 OD1 A:ASP173 2.3 65.0 1.0 OD2 A:ASP228 2.3 40.6 1.0 O A:HOH802 2.4 35.1 1.0 OE2 A:GLU175 2.4 67.4 1.0 O A:HOH810 2.4 21.1 1.0 CD A:GLU116 3.2 62.8 1.0 HA A:ASP173 3.3 65.6 1.0 CG A:ASP228 3.4 75.4 1.0 CG A:ASP173 3.5 59.5 1.0 CD A:GLU175 3.6 40.2 1.0 OE2 A:GLU116 3.6 51.9 1.0 OD1 A:ASP228 3.7 74.3 1.0 H A:GLU175 3.8 90.7 1.0 H A:ARG174 3.8 62.8 1.0 HB2 A:GLU175 4.0 48.6 1.0 CA A:ASP173 4.1 54.7 1.0 HB2 A:GLU116 4.2 50.9 1.0 CB A:ASP173 4.2 82.5 1.0 OE1 A:GLU175 4.2 40.0 1.0 HB2 A:ASP173 4.3 99.0 1.0 CG A:GLU116 4.3 49.3 1.0 HG3 A:GLU116 4.3 59.1 1.0 N A:ARG174 4.4 52.3 1.0 CA A:CA707 4.4 48.9 1.0 OD2 A:ASP173 4.5 54.1 1.0 C A:ASP173 4.6 63.0 1.0 N A:GLU175 4.7 75.6 1.0 CG A:GLU175 4.7 40.0 1.0 CB A:ASP228 4.7 89.6 1.0 CB A:GLU175 4.7 40.5 1.0 CB A:GLU116 4.8 42.4 1.0 O A:LEU172 4.8 43.1 1.0 HB2 A:ASP228 4.9 0.5 1.0 HG2 A:GLU175 4.9 48.0 1.0 HB3 A:ASP228 5.0 0.5 1.0 HB3 A:ARG174 5.0 0.8 1.0

Calcium binding site 5 out of 15 in the Human Protocadherin 10 Ectodomain


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 5 of Human Protocadherin 10 Ectodomain within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca707 b:48.9 occ:1.00 OD1 A:ASP228 2.3 74.3 1.0 OD1 A:ASP261 2.3 39.1 1.0 OD1 A:ASP225 2.3 61.5 1.0 OE1 A:GLU175 2.4 40.0 1.0 OE2 A:GLU116 2.4 51.9 1.0 O A:SER226 2.4 65.9 1.0 H A:ASP228 3.0 47.2 1.0 H A:SER226 3.0 71.6 1.0 CG A:ASP261 3.2 73.2 1.0 CG A:ASP228 3.2 75.4 1.0 CD A:GLU175 3.3 40.2 1.0 HH21 A:ARG174 3.3 81.7 1.0 CG A:ASP225 3.4 72.4 1.0 OE2 A:GLU175 3.5 67.4 1.0 CD A:GLU116 3.5 62.8 1.0 C A:SER226 3.6 76.0 1.0 N A:SER226 3.8 59.7 1.0 N A:ASP228 3.8 39.4 1.0 OD2 A:ASP261 3.8 73.4 1.0 OD2 A:ASP228 3.8 40.6 1.0 OD2 A:ASP225 3.9 57.2 1.0 HA A:ASP261 3.9 80.2 1.0 HE A:ARG174 3.9 55.3 1.0 OE1 A:GLU116 4.0 88.6 1.0 NH2 A:ARG174 4.1 68.1 1.0 HA A:ASP225 4.2 71.2 1.0 HB3 A:ASP261 4.2 0.2 1.0 CB A:ASP261 4.2 88.5 1.0 CB A:ASP228 4.3 89.6 1.0 H A:ASN229 4.3 46.5 1.0 HA A:ASN227 4.3 83.8 1.0 HB3 A:ASP228 4.3 0.5 1.0 CA A:SER226 4.3 84.9 1.0 CA A:CA706 4.4 0.3 1.0 CA A:ASP228 4.5 61.3 1.0 CA A:ASP261 4.6 66.8 1.0 N A:ASN227 4.6 63.7 1.0 HH22 A:ARG174 4.6 81.7 1.0 OD1 A:ASN229 4.6 39.1 1.0 NE A:ARG174 4.6 46.0 1.0 CB A:ASP225 4.6 78.1 1.0 CG A:GLU175 4.6 40.0 1.0 N A:ASN229 4.7 38.7 1.0 HB2 A:ASN229 4.7 85.1 1.0 HB3 A:ARG174 4.7 0.8 1.0 CA A:ASP225 4.7 59.3 1.0 CG A:GLU116 4.8 49.3 1.0 CA A:ASN227 4.8 69.8 1.0 C A:ASP225 4.8 45.3 1.0 H A:GLU262 4.8 0.4 1.0 HG2 A:GLU116 4.8 59.1 1.0 C A:ASP228 4.8 67.2 1.0 C A:ASN227 4.8 58.0 1.0 OG A:SER226 4.8 63.1 1.0 HG3 A:GLU175 4.8 48.0 1.0 HG2 A:GLU175 4.8 48.0 1.0 CZ A:ARG174 4.9 64.8 1.0

Calcium binding site 6 out of 15 in the Human Protocadherin 10 Ectodomain


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 6 of Human Protocadherin 10 Ectodomain within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca708 b:44.0 occ:1.00 OD2 A:ASP259 2.3 74.1 1.0 OD1 A:ASN227 2.4 60.5 1.0 O A:ASN265 2.4 0.2 1.0 OD2 A:ASP261 2.4 73.4 1.0 O A:ASN229 2.4 60.9 1.0 OD2 A:ASP315 2.5 46.6 1.0 OD1 A:ASP259 2.5 37.5 1.0 CG A:ASP259 2.8 37.0 1.0 HB2 A:ASP261 3.0 0.2 1.0 CG A:ASP261 3.3 73.2 1.0 CG A:ASP315 3.4 64.3 1.0 CG A:ASN227 3.5 62.8 1.0 C A:ASN265 3.5 97.4 1.0 HB2 A:ASP315 3.6 0.5 1.0 C A:ASN229 3.6 50.5 1.0 HB3 A:ASP315 3.6 0.5 1.0 CB A:ASP261 3.6 88.5 1.0 H A:ASN229 3.7 46.5 1.0 HB3 A:ASN265 3.7 77.6 1.0 CB A:ASP315 3.8 93.8 1.0 HA A:ASN227 3.8 83.8 1.0 HA2 A:GLY266 3.8 68.2 1.0 HB2 A:ASN229 3.9 85.1 1.0 HD21 A:ASN227 4.0 0.2 1.0 HB3 A:ASP261 4.0 0.2 1.0 HA A:VAL230 4.0 90.5 1.0 HD3 A:PRO231 4.1 43.1 1.0 ND2 A:ASN227 4.2 97.7 1.0 CB A:ASP259 4.3 36.6 1.0 HA A:ASN265 4.3 0.5 1.0 H A:ASP261 4.3 46.0 1.0 N A:ASN229 4.4 38.7 1.0 CA A:ASN265 4.4 87.9 1.0 CA A:ASN229 4.4 38.3 1.0 N A:GLY266 4.4 78.0 1.0 OD1 A:ASP261 4.5 39.1 1.0 CB A:ASN265 4.5 64.7 1.0 CB A:ASN229 4.5 70.9 1.0 CA A:ASN227 4.5 69.8 1.0 OD1 A:ASP315 4.5 0.6 1.0 N A:VAL230 4.5 72.8 1.0 CA A:GLY266 4.6 56.8 1.0 CB A:ASN227 4.6 42.0 1.0 HB3 A:ASP259 4.6 43.9 1.0 HB2 A:ASP259 4.6 43.9 1.0 CA A:VAL230 4.7 75.5 1.0 HB3 A:ASN229 4.7 85.1 1.0 C A:ASN227 4.9 58.0 1.0 CA A:ASP261 4.9 66.8 1.0 HD22 A:ASN227 5.0 0.2 1.0 N A:ASP261 5.0 38.3 1.0

Calcium binding site 7 out of 15 in the Human Protocadherin 10 Ectodomain


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 7 of Human Protocadherin 10 Ectodomain within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca709 b:51.5 occ:1.00 OD2 A:ASP336 2.3 76.0 1.0 OD1 A:ASP300 2.3 93.5 1.0 OE1 A:GLU302 2.4 73.6 1.0 OE1 A:GLU244 2.4 95.0 1.0 O A:HOH804 2.5 57.7 1.0 HA A:ASP300 3.0 0.5 1.0 CD A:GLU244 3.2 87.6 1.0 CG A:ASP336 3.2 90.3 1.0 H A:TYR301 3.4 79.5 1.0 OD1 A:ASP336 3.5 93.7 1.0 CG A:ASP300 3.5 0.2 1.0 OE2 A:GLU244 3.5 68.5 1.0 H A:GLU302 3.5 0.1 1.0 HD21 A:ASN245 3.6 0.3 1.0 CD A:GLU302 3.6 34.1 1.0 CA A:ASP300 3.8 93.8 1.0 OD1 A:ASN245 3.8 68.3 1.0 N A:TYR301 3.9 66.2 1.0 HB2 A:GLU302 4.0 95.5 1.0 HB2 A:GLU244 4.0 84.5 1.0 CB A:ASP300 4.1 0.9 1.0 CA A:CA710 4.2 35.6 1.0 C A:ASP300 4.2 90.8 1.0 ND2 A:ASN245 4.2 0.6 1.0 HB3 A:TYR301 4.3 82.4 1.0 OE2 A:GLU302 4.3 32.4 1.0 HB2 A:ASP300 4.4 0.3 1.0 N A:GLU302 4.4 89.2 1.0 CG A:GLU244 4.4 97.0 1.0 CG A:ASN245 4.4 93.6 1.0 OD2 A:ASP300 4.4 0.4 1.0 HG3 A:GLU244 4.5 0.5 1.0 O A:LEU299 4.6 47.9 1.0 CB A:ASP336 4.6 95.4 1.0 CG A:GLU302 4.7 84.3 1.0 CB A:GLU244 4.7 70.5 1.0 CB A:GLU302 4.8 79.6 1.0 HB2 A:ASP336 4.8 0.4 1.0 CA A:TYR301 4.9 70.2 1.0 HG2 A:GLU302 4.9 0.2 1.0 HD21 A:ASN337 4.9 0.2 1.0 HB3 A:ASP336 4.9 0.4 1.0 CB A:TYR301 4.9 68.7 1.0 HD22 A:ASN245 5.0 0.3 1.0

Calcium binding site 8 out of 15 in the Human Protocadherin 10 Ectodomain


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 8 of Human Protocadherin 10 Ectodomain within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca710 b:35.6 occ:1.00 OD1 A:ASP336 2.3 93.7 1.0 OE2 A:GLU302 2.3 32.4 1.0 OD1 A:ASP369 2.3 93.6 1.0 OE2 A:GLU244 2.4 68.5 1.0 OD1 A:ASP333 2.4 97.7 1.0 O A:ALA334 2.5 64.8 1.0 CD A:GLU302 3.1 34.1 1.0 OE1 A:GLU302 3.2 73.6 1.0 CD A:GLU244 3.2 87.6 1.0 H A:ALA334 3.2 0.2 1.0 H A:ASP336 3.3 88.3 1.0 CG A:ASP369 3.4 92.8 1.0 CG A:ASP336 3.4 90.3 1.0 CG A:ASP333 3.5 95.4 1.0 OE1 A:GLU244 3.5 95.0 1.0 HB3 A:TYR301 3.6 82.4 1.0 C A:ALA334 3.7 71.6 1.0 HA A:ASP369 3.7 99.9 1.0 N A:ALA334 3.9 83.5 1.0 OD2 A:ASP333 4.0 78.0 1.0 N A:ASP336 4.1 73.6 1.0 OD2 A:ASP336 4.1 76.0 1.0 OD2 A:ASP369 4.2 0.5 1.0 HA A:ASP333 4.2 0.5 1.0 CA A:CA709 4.2 51.5 1.0 HB3 A:ASP369 4.2 70.4 1.0 CB A:ASP369 4.3 58.7 1.0 HA A:ASN335 4.4 0.1 1.0 HD22 A:ASN373 4.4 0.9 1.0 CA A:ALA334 4.4 80.1 1.0 CA A:ASP369 4.5 83.2 1.0 CB A:ASP336 4.5 95.4 1.0 CG A:GLU302 4.5 84.3 1.0 HG2 A:GLU244 4.5 0.5 1.0 CG A:GLU244 4.5 97.0 1.0 CB A:TYR301 4.6 68.7 1.0 HB3 A:ASP336 4.6 0.4 1.0 HD1 A:TYR301 4.6 0.3 1.0 CB A:ASP333 4.7 95.2 1.0 HD22 A:ASN337 4.7 0.2 1.0 C A:ASP333 4.7 96.6 1.0 CA A:ASP333 4.7 87.1 1.0 N A:ASN335 4.7 99.1 1.0 CA A:ASP336 4.7 79.1 1.0 HG3 A:GLU302 4.7 0.2 1.0 ND2 A:ASN337 4.8 0.5 1.0 HB2 A:ASN337 4.8 82.8 1.0 H A:ASN337 4.8 80.6 1.0 HB2 A:TYR301 4.8 82.4 1.0 HG2 A:GLU302 4.8 0.2 1.0 H A:SER370 4.8 0.5 1.0 HB3 A:ALA334 4.9 0.1 1.0 CA A:ASN335 4.9 91.8 1.0 HD21 A:ASN337 4.9 0.2 1.0 H A:GLU302 4.9 0.1 1.0 C A:ASN335 5.0 80.1 1.0 HG3 A:GLU244 5.0 0.5 1.0 C A:ASP336 5.0 63.0 1.0

Calcium binding site 9 out of 15 in the Human Protocadherin 10 Ectodomain


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 9 of Human Protocadherin 10 Ectodomain within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca711 b:86.7 occ:1.00 O A:ASN337 2.4 0.3 1.0 O A:ASN373 2.4 96.2 1.0 OD2 A:ASP367 2.4 84.6 1.0 OD2 A:ASP369 2.4 0.5 1.0 OD2 A:ASP420 2.4 0.9 1.0 OD1 A:ASN335 2.4 94.2 1.0 OD1 A:ASP367 2.5 40.9 1.0 CG A:ASP367 2.8 52.3 1.0 HB2 A:ASP369 3.0 70.4 1.0 HD12 A:LEU426 3.2 0.3 1.0 CG A:ASP369 3.4 92.8 1.0 CG A:ASP420 3.5 0.6 1.0 H A:ASN337 3.5 80.6 1.0 C A:ASN373 3.5 89.6 1.0 C A:ASN337 3.6 0.3 1.0 HB3 A:ASN373 3.6 0.7 1.0 CB A:ASP369 3.6 58.7 1.0 CG A:ASN335 3.6 0.6 1.0 HB2 A:ASP420 3.8 0.2 1.0 HB3 A:ASP420 3.8 0.2 1.0 HA2 A:GLY374 3.9 97.0 1.0 HB2 A:ASN337 3.9 82.8 1.0 CB A:ASP420 3.9 94.4 1.0 HB3 A:ASP369 4.0 70.4 1.0 HD21 A:ASN335 4.0 0.7 1.0 HA A:ASN335 4.1 0.1 1.0 HD3 A:PRO339 4.1 36.2 1.0 HA A:ALA338 4.1 70.8 1.0 CD1 A:LEU426 4.1 0.6 1.0 HB2 A:LEU426 4.2 74.2 1.0 N A:ASN337 4.2 67.2 1.0 H A:ASP369 4.2 0.1 1.0 HA A:ASN373 4.2 0.5 1.0 CB A:ASP367 4.3 89.8 1.0 CA A:ASN373 4.3 0.1 1.0 ND2 A:ASN335 4.3 0.9 1.0 CB A:ASN373 4.3 0.1 1.0 CA A:ASN337 4.3 79.8 1.0 HD11 A:LEU426 4.5 0.3 1.0 N A:GLY374 4.5 80.7 1.0 CB A:ASN337 4.5 69.0 1.0 HB3 A:ASP367 4.5 0.7 1.0 OD1 A:ASP369 4.5 93.6 1.0 OD1 A:ASP420 4.5 0.1 1.0 HB2 A:ASN373 4.5 0.7 1.0 N A:ALA338 4.6 88.8 1.0 HG A:LEU426 4.6 86.2 1.0 CA A:GLY374 4.7 80.9 1.0 HB3 A:ASN337 4.7 82.8 1.0 HB2 A:ASP367 4.7 0.7 1.0 HD13 A:LEU426 4.7 0.3 1.0 CA A:ALA338 4.8 59.0 1.0 CA A:ASN335 4.8 91.8 1.0 CB A:ASN335 4.8 78.2 1.0 H A:ASP336 4.8 88.3 1.0 CG A:LEU426 4.8 71.8 1.0 CA A:ASP369 4.9 83.2 1.0 N A:ASP369 4.9 0.6 1.0 CB A:LEU426 5.0 61.9 1.0 CD A:PRO339 5.0 30.2 1.0

Calcium binding site 10 out of 15 in the Human Protocadherin 10 Ectodomain


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 10 of Human Protocadherin 10 Ectodomain within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca712 b:52.5 occ:1.00 OD2 A:ASP441 2.3 97.6 1.0 OD1 A:ASP405 2.3 93.2 1.0 OE1 A:GLU407 2.3 73.7 1.0 OE1 A:GLU352 2.4 35.5 1.0 CG A:ASP441 2.9 0.6 1.0 OD1 A:ASP441 3.0 91.0 1.0 HD21 A:ASN442 3.3 0.2 1.0 CD A:GLU407 3.4 72.7 1.0 CD A:GLU352 3.5 97.8 1.0 CG A:ASP405 3.5 68.2 1.0 HB2 A:GLU407 3.6 0.4 1.0 H A:GLU407 3.6 0.9 1.0 HD22 A:ASN442 3.7 0.2 1.0 OE2 A:GLU352 3.8 84.4 1.0 ND2 A:ASN442 3.8 0.6 1.0 CA A:CA713 3.8 65.3 1.0 HA A:ASP405 3.8 0.4 1.0 HG2 A:GLU407 4.1 0.6 1.0 H A:ARG406 4.1 78.4 1.0 CG A:GLU407 4.1 95.5 1.0 OD2 A:ASP405 4.3 94.5 1.0 OE2 A:GLU407 4.3 54.0 1.0 CB A:GLU407 4.3 1.0 1.0 CB A:ASP441 4.4 0.6 1.0 N A:GLU407 4.4 1.0 1.0 HB2 A:ASP441 4.5 0.9 1.0 CA A:ASP405 4.5 86.2 1.0 CB A:ASP405 4.5 55.2 1.0 N A:ARG406 4.5 65.3 1.0 HB2 A:GLU352 4.5 73.9 1.0 HB2 A:ASP405 4.7 66.3 1.0 HB3 A:ARG406 4.8 99.6 1.0 C A:ASP405 4.8 68.9 1.0 CG A:GLU352 4.8 93.8 1.0 HB3 A:ASP441 4.9 0.9 1.0 O A:ASP441 4.9 68.1 1.0

O.J.Harrison, J.Brasch, P.S.Katsamba, G.Ahlsen, A.J.Noble, H.Dan, R.V.Sampogna, C.S.Potter, B.Carragher, B.Honig, L.Shapiro. Family-Wide Structural and Biophysical Analysis of Binding Interactions Among Non-Clustered Delta-Protocadherins. Cell Rep V. 30 2655 2020.
ISSN: ESSN 2211-1247
PubMed: 32101743
DOI: 10.1016/J.CELREP.2020.02.003