Calcium in PDB 6vra: Anthrax Octamer Prechannel Bound to Full-Length Edema Factor

All present enzymatic activity of Anthrax Octamer Prechannel Bound to Full-Length Edema Factor:
4.6.1.1;

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 16;

Binding sites:

The binding sites of Calcium atom in the Anthrax Octamer Prechannel Bound to Full-Length Edema Factor (pdb code 6vra). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 16 binding sites of Calcium where determined in the Anthrax Octamer Prechannel Bound to Full-Length Edema Factor, PDB code: 6vra:
Jump to Calcium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Calcium binding site 1 out of 16 in the Anthrax Octamer Prechannel Bound to Full-Length Edema Factor


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Anthrax Octamer Prechannel Bound to Full-Length Edema Factor within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca801 b:29.6 occ:1.00 OD1 A:ASP179 2.4 30.3 1.0 O A:ILE183 2.4 30.9 1.0 OE2 A:GLU188 2.5 30.2 1.0 OD2 A:ASP179 2.5 30.3 1.0 OD1 A:ASP177 2.6 35.8 1.0 OD1 A:ASP181 2.6 29.9 1.0 CG A:ASP179 2.8 30.3 1.0 CD A:GLU188 3.2 30.2 1.0 CG A:ASP181 3.5 29.9 1.0 C A:ILE183 3.6 30.9 1.0 OD2 A:ASP181 3.6 29.9 1.0 CG A:ASP177 3.8 35.8 1.0 OE1 A:GLU188 3.8 30.2 1.0 CG A:GLU188 4.1 30.2 1.0 N A:ILE183 4.1 30.9 1.0 OD1 A:ASP185 4.2 36.9 1.0 CA A:ILE183 4.2 30.9 1.0 CA A:CA802 4.2 22.2 1.0 CB A:ILE183 4.3 30.9 1.0 CB A:ASP179 4.3 30.3 1.0 OD2 A:ASP177 4.5 35.8 1.0 C A:PRO184 4.5 31.2 1.0 O A:PRO184 4.5 31.2 1.0 O A:PRO223 4.5 22.5 1.0 N A:ASP181 4.6 29.9 1.0 N A:PRO184 4.6 31.2 1.0 N A:ASP179 4.7 30.3 1.0 CA A:PRO184 4.7 31.2 1.0 N A:ASN180 4.7 34.2 1.0 CA A:PRO223 4.8 22.5 1.0 N A:GLY182 4.8 30.2 1.0 CB A:ASP177 4.8 35.8 1.0 CB A:ASP181 4.8 29.9 1.0 CA A:ASP177 4.9 35.8 1.0 N A:ASP185 4.9 36.9 1.0 CA A:ASP179 4.9 30.3 1.0 C A:PRO223 5.0 22.5 1.0

Calcium binding site 2 out of 16 in the Anthrax Octamer Prechannel Bound to Full-Length Edema Factor


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Anthrax Octamer Prechannel Bound to Full-Length Edema Factor within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca802 b:22.2 occ:1.00 OD2 A:ASP179 2.5 30.3 1.0 OD2 A:ASP235 2.5 25.5 1.0 O A:LYS225 2.5 22.0 1.0 OE1 A:GLU188 2.7 30.2 1.0 O A:SER222 2.7 24.7 1.0 OE2 A:GLU188 2.9 30.2 1.0 OD2 A:ASP181 3.0 29.9 1.0 CD A:GLU188 3.2 30.2 1.0 CG A:ASP235 3.6 25.5 1.0 CG A:ASP179 3.6 30.3 1.0 C A:LYS225 3.8 22.0 1.0 C A:SER222 3.8 24.7 1.0 CG A:ASP181 4.0 29.9 1.0 CB A:ASP235 4.2 25.5 1.0 OG1 A:THR228 4.2 24.0 1.0 CA A:CA801 4.2 29.6 1.0 N A:SER222 4.3 24.7 1.0 CB A:ASP179 4.3 30.3 1.0 CB A:SER221 4.3 30.0 1.0 OD1 A:ASP181 4.4 29.9 1.0 N A:LYS225 4.5 22.0 1.0 CA A:PRO223 4.5 22.5 1.0 OD1 A:ASP179 4.6 30.3 1.0 CG A:GLU188 4.6 30.2 1.0 N A:PRO223 4.6 22.5 1.0 OD1 A:ASP235 4.6 25.5 1.0 CA A:SER222 4.6 24.7 1.0 CA A:LYS225 4.7 22.0 1.0 OG A:SER222 4.7 24.7 1.0 N A:TRP226 4.7 22.3 1.0 CA A:TRP226 4.7 22.3 1.0 C A:PRO223 4.7 22.5 1.0 C A:TRP226 4.8 22.3 1.0 N A:GLU224 5.0 28.1 1.0 O A:TRP226 5.0 22.3 1.0

Calcium binding site 3 out of 16 in the Anthrax Octamer Prechannel Bound to Full-Length Edema Factor


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Anthrax Octamer Prechannel Bound to Full-Length Edema Factor within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca801 b:29.3 occ:1.00 OD1 B:ASP179 2.4 33.7 1.0 O B:ILE183 2.4 27.0 1.0 OE1 B:GLU188 2.5 24.9 1.0 OD1 B:ASP181 2.5 32.1 1.0 OD1 B:ASP177 2.5 43.9 1.0 OD2 B:ASP179 2.8 33.7 1.0 CG B:ASP179 2.9 33.7 1.0 CD B:GLU188 3.4 24.9 1.0 CG B:ASP181 3.4 32.1 1.0 C B:ILE183 3.6 27.0 1.0 OD2 B:ASP181 3.6 32.1 1.0 CG B:ASP177 3.8 43.9 1.0 OE2 B:GLU188 3.8 24.9 1.0 OD1 B:ASP185 3.9 37.9 1.0 N B:ILE183 4.2 27.0 1.0 CA B:ILE183 4.3 27.0 1.0 CA B:CA802 4.4 22.3 1.0 CG B:GLU188 4.4 24.9 1.0 CB B:ASP179 4.4 33.7 1.0 OD2 B:ASP177 4.4 43.9 1.0 O B:PRO223 4.5 23.8 1.0 CB B:ILE183 4.5 27.0 1.0 C B:PRO184 4.5 30.1 1.0 N B:ASP181 4.5 32.1 1.0 N B:PRO184 4.6 30.1 1.0 N B:ASP179 4.7 33.7 1.0 CA B:PRO184 4.7 30.1 1.0 N B:GLY182 4.7 33.3 1.0 O B:PRO184 4.7 30.1 1.0 CA B:ASP177 4.7 43.9 1.0 N B:ASP185 4.8 37.9 1.0 CB B:ASP181 4.8 32.1 1.0 CB B:ASP177 4.8 43.9 1.0 CA B:PRO223 4.8 23.8 1.0 C B:PRO223 4.9 23.8 1.0 N B:ASN180 4.9 37.1 1.0 N B:ARG178 5.0 41.8 1.0

Calcium binding site 4 out of 16 in the Anthrax Octamer Prechannel Bound to Full-Length Edema Factor


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of Anthrax Octamer Prechannel Bound to Full-Length Edema Factor within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca802 b:22.3 occ:1.00 OE2 B:GLU188 2.4 24.9 1.0 O B:LYS225 2.4 26.3 1.0 OD2 B:ASP179 2.5 33.7 1.0 OD2 B:ASP235 2.5 31.7 1.0 O B:SER222 2.5 25.9 1.0 OD2 B:ASP181 2.5 32.1 1.0 CD B:GLU188 3.3 24.9 1.0 OE1 B:GLU188 3.5 24.9 1.0 CG B:ASP181 3.6 32.1 1.0 C B:LYS225 3.6 26.3 1.0 CG B:ASP235 3.7 31.7 1.0 CG B:ASP179 3.7 33.7 1.0 C B:SER222 3.7 25.9 1.0 OD1 B:ASP181 4.2 32.1 1.0 N B:LYS225 4.3 26.3 1.0 OG1 B:THR228 4.3 26.9 1.0 CB B:ASP235 4.4 31.7 1.0 CA B:CA801 4.4 29.3 1.0 CB B:ASP179 4.4 33.7 1.0 N B:SER222 4.4 25.9 1.0 CA B:LYS225 4.5 26.3 1.0 C B:TRP226 4.6 22.4 1.0 CA B:PRO223 4.6 23.8 1.0 CA B:SER222 4.6 25.9 1.0 N B:TRP226 4.6 22.4 1.0 CA B:TRP226 4.6 22.4 1.0 CG B:GLU188 4.6 24.9 1.0 N B:PRO223 4.6 23.8 1.0 OD1 B:ASP235 4.6 31.7 1.0 OD1 B:ASP179 4.6 33.7 1.0 CB B:ASP181 4.7 32.1 1.0 CB B:SER221 4.7 28.4 1.0 O B:TRP226 4.7 22.4 1.0 C B:PRO223 4.7 23.8 1.0 N B:GLU224 4.7 31.2 1.0 CB B:SER222 4.9 25.9 1.0 N B:SER227 5.0 25.7 1.0

Calcium binding site 5 out of 16 in the Anthrax Octamer Prechannel Bound to Full-Length Edema Factor


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 5 of Anthrax Octamer Prechannel Bound to Full-Length Edema Factor within 5.0Å range: probe atom residue distance (Å) B Occ C:Ca801 b:29.6 occ:1.00 OD1 C:ASP179 2.4 30.3 1.0 O C:ILE183 2.4 30.9 1.0 OE2 C:GLU188 2.5 30.2 1.0 OD2 C:ASP179 2.5 30.3 1.0 OD1 C:ASP177 2.6 35.8 1.0 OD1 C:ASP181 2.6 29.9 1.0 CG C:ASP179 2.8 30.3 1.0 CD C:GLU188 3.2 30.2 1.0 CG C:ASP181 3.5 29.9 1.0 C C:ILE183 3.6 30.9 1.0 OD2 C:ASP181 3.6 29.9 1.0 CG C:ASP177 3.8 35.8 1.0 OE1 C:GLU188 3.8 30.2 1.0 CG C:GLU188 4.1 30.2 1.0 N C:ILE183 4.1 30.9 1.0 OD1 C:ASP185 4.2 36.9 1.0 CA C:ILE183 4.2 30.9 1.0 CA C:CA802 4.2 22.2 1.0 CB C:ILE183 4.3 30.9 1.0 CB C:ASP179 4.3 30.3 1.0 OD2 C:ASP177 4.5 35.8 1.0 C C:PRO184 4.5 31.2 1.0 O C:PRO184 4.5 31.2 1.0 O C:PRO223 4.5 22.5 1.0 N C:ASP181 4.6 29.9 1.0 N C:PRO184 4.6 31.2 1.0 N C:ASP179 4.7 30.3 1.0 CA C:PRO184 4.7 31.2 1.0 N C:ASN180 4.7 34.2 1.0 CA C:PRO223 4.8 22.5 1.0 N C:GLY182 4.8 30.2 1.0 CB C:ASP177 4.8 35.8 1.0 CB C:ASP181 4.8 29.9 1.0 CA C:ASP177 4.9 35.8 1.0 N C:ASP185 4.9 36.9 1.0 CA C:ASP179 4.9 30.3 1.0 C C:PRO223 5.0 22.5 1.0

Calcium binding site 6 out of 16 in the Anthrax Octamer Prechannel Bound to Full-Length Edema Factor


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 6 of Anthrax Octamer Prechannel Bound to Full-Length Edema Factor within 5.0Å range: probe atom residue distance (Å) B Occ C:Ca802 b:22.2 occ:1.00 OD2 C:ASP179 2.5 30.3 1.0 OD2 C:ASP235 2.5 25.5 1.0 O C:LYS225 2.5 22.0 1.0 OE1 C:GLU188 2.7 30.2 1.0 O C:SER222 2.7 24.7 1.0 OE2 C:GLU188 2.9 30.2 1.0 OD2 C:ASP181 3.0 29.9 1.0 CD C:GLU188 3.2 30.2 1.0 CG C:ASP235 3.6 25.5 1.0 CG C:ASP179 3.6 30.3 1.0 C C:LYS225 3.8 22.0 1.0 C C:SER222 3.8 24.7 1.0 CG C:ASP181 4.0 29.9 1.0 CB C:ASP235 4.2 25.5 1.0 OG1 C:THR228 4.2 24.0 1.0 CA C:CA801 4.2 29.6 1.0 N C:SER222 4.3 24.7 1.0 CB C:ASP179 4.3 30.3 1.0 CB C:SER221 4.3 30.0 1.0 OD1 C:ASP181 4.4 29.9 1.0 N C:LYS225 4.5 22.0 1.0 CA C:PRO223 4.5 22.5 1.0 OD1 C:ASP179 4.6 30.3 1.0 CG C:GLU188 4.6 30.2 1.0 N C:PRO223 4.6 22.5 1.0 OD1 C:ASP235 4.6 25.5 1.0 CA C:SER222 4.6 24.7 1.0 CA C:LYS225 4.7 22.0 1.0 OG C:SER222 4.7 24.7 1.0 N C:TRP226 4.7 22.3 1.0 CA C:TRP226 4.7 22.3 1.0 C C:PRO223 4.7 22.5 1.0 C C:TRP226 4.8 22.3 1.0 N C:GLU224 5.0 28.1 1.0 O C:TRP226 5.0 22.3 1.0

Calcium binding site 7 out of 16 in the Anthrax Octamer Prechannel Bound to Full-Length Edema Factor


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 7 of Anthrax Octamer Prechannel Bound to Full-Length Edema Factor within 5.0Å range: probe atom residue distance (Å) B Occ D:Ca801 b:29.3 occ:1.00 OD1 D:ASP179 2.4 33.7 1.0 O D:ILE183 2.4 27.0 1.0 OE1 D:GLU188 2.5 24.9 1.0 OD1 D:ASP181 2.5 32.1 1.0 OD1 D:ASP177 2.5 43.9 1.0 OD2 D:ASP179 2.8 33.7 1.0 CG D:ASP179 2.9 33.7 1.0 CD D:GLU188 3.4 24.9 1.0 CG D:ASP181 3.4 32.1 1.0 C D:ILE183 3.6 27.0 1.0 OD2 D:ASP181 3.6 32.1 1.0 CG D:ASP177 3.8 43.9 1.0 OE2 D:GLU188 3.8 24.9 1.0 OD1 D:ASP185 3.9 37.9 1.0 N D:ILE183 4.2 27.0 1.0 CA D:ILE183 4.3 27.0 1.0 CA D:CA802 4.4 22.3 1.0 CG D:GLU188 4.4 24.9 1.0 CB D:ASP179 4.4 33.7 1.0 OD2 D:ASP177 4.4 43.9 1.0 O D:PRO223 4.5 23.8 1.0 CB D:ILE183 4.5 27.0 1.0 C D:PRO184 4.5 30.1 1.0 N D:ASP181 4.5 32.1 1.0 N D:PRO184 4.6 30.1 1.0 N D:ASP179 4.7 33.7 1.0 CA D:PRO184 4.7 30.1 1.0 N D:GLY182 4.7 33.3 1.0 O D:PRO184 4.7 30.1 1.0 CA D:ASP177 4.7 43.9 1.0 N D:ASP185 4.8 37.9 1.0 CB D:ASP181 4.8 32.1 1.0 CB D:ASP177 4.8 43.9 1.0 CA D:PRO223 4.8 23.8 1.0 C D:PRO223 4.9 23.8 1.0 N D:ASN180 4.9 37.1 1.0 N D:ARG178 5.0 41.8 1.0

Calcium binding site 8 out of 16 in the Anthrax Octamer Prechannel Bound to Full-Length Edema Factor


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 8 of Anthrax Octamer Prechannel Bound to Full-Length Edema Factor within 5.0Å range: probe atom residue distance (Å) B Occ D:Ca802 b:22.3 occ:1.00 OE2 D:GLU188 2.4 24.9 1.0 O D:LYS225 2.4 26.3 1.0 OD2 D:ASP179 2.5 33.7 1.0 OD2 D:ASP235 2.5 31.7 1.0 O D:SER222 2.5 25.9 1.0 OD2 D:ASP181 2.5 32.1 1.0 CD D:GLU188 3.3 24.9 1.0 OE1 D:GLU188 3.5 24.9 1.0 CG D:ASP181 3.6 32.1 1.0 C D:LYS225 3.6 26.3 1.0 CG D:ASP235 3.7 31.7 1.0 CG D:ASP179 3.7 33.7 1.0 C D:SER222 3.7 25.9 1.0 OD1 D:ASP181 4.2 32.1 1.0 N D:LYS225 4.3 26.3 1.0 OG1 D:THR228 4.3 26.9 1.0 CB D:ASP235 4.4 31.7 1.0 CA D:CA801 4.4 29.3 1.0 CB D:ASP179 4.4 33.7 1.0 N D:SER222 4.4 25.9 1.0 CA D:LYS225 4.5 26.3 1.0 C D:TRP226 4.6 22.4 1.0 CA D:PRO223 4.6 23.8 1.0 CA D:SER222 4.6 25.9 1.0 N D:TRP226 4.6 22.4 1.0 CA D:TRP226 4.6 22.4 1.0 CG D:GLU188 4.6 24.9 1.0 N D:PRO223 4.6 23.8 1.0 OD1 D:ASP235 4.6 31.7 1.0 OD1 D:ASP179 4.6 33.7 1.0 CB D:ASP181 4.7 32.1 1.0 CB D:SER221 4.7 28.4 1.0 O D:TRP226 4.7 22.4 1.0 C D:PRO223 4.7 23.8 1.0 N D:GLU224 4.7 31.2 1.0 CB D:SER222 4.9 25.9 1.0 N D:SER227 5.0 25.7 1.0

Calcium binding site 9 out of 16 in the Anthrax Octamer Prechannel Bound to Full-Length Edema Factor


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 9 of Anthrax Octamer Prechannel Bound to Full-Length Edema Factor within 5.0Å range: probe atom residue distance (Å) B Occ E:Ca801 b:29.6 occ:1.00 OD1 E:ASP179 2.4 30.3 1.0 O E:ILE183 2.4 30.9 1.0 OE2 E:GLU188 2.5 30.2 1.0 OD2 E:ASP179 2.5 30.3 1.0 OD1 E:ASP177 2.6 35.8 1.0 OD1 E:ASP181 2.6 29.9 1.0 CG E:ASP179 2.8 30.3 1.0 CD E:GLU188 3.2 30.2 1.0 CG E:ASP181 3.5 29.9 1.0 C E:ILE183 3.6 30.9 1.0 OD2 E:ASP181 3.6 29.9 1.0 CG E:ASP177 3.8 35.8 1.0 OE1 E:GLU188 3.8 30.2 1.0 CG E:GLU188 4.1 30.2 1.0 N E:ILE183 4.1 30.9 1.0 OD1 E:ASP185 4.2 36.9 1.0 CA E:ILE183 4.2 30.9 1.0 CA E:CA802 4.2 22.2 1.0 CB E:ILE183 4.3 30.9 1.0 CB E:ASP179 4.3 30.3 1.0 OD2 E:ASP177 4.5 35.8 1.0 C E:PRO184 4.5 31.2 1.0 O E:PRO184 4.5 31.2 1.0 O E:PRO223 4.5 22.5 1.0 N E:ASP181 4.6 29.9 1.0 N E:PRO184 4.6 31.2 1.0 N E:ASP179 4.7 30.3 1.0 CA E:PRO184 4.7 31.2 1.0 N E:ASN180 4.7 34.2 1.0 CA E:PRO223 4.8 22.5 1.0 N E:GLY182 4.8 30.2 1.0 CB E:ASP177 4.8 35.8 1.0 CB E:ASP181 4.8 29.9 1.0 CA E:ASP177 4.9 35.8 1.0 N E:ASP185 4.9 36.9 1.0 CA E:ASP179 4.9 30.3 1.0 C E:PRO223 5.0 22.5 1.0

Calcium binding site 10 out of 16 in the Anthrax Octamer Prechannel Bound to Full-Length Edema Factor


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 10 of Anthrax Octamer Prechannel Bound to Full-Length Edema Factor within 5.0Å range: probe atom residue distance (Å) B Occ E:Ca802 b:22.2 occ:1.00 OD2 E:ASP179 2.5 30.3 1.0 OD2 E:ASP235 2.5 25.5 1.0 O E:LYS225 2.5 22.0 1.0 OE1 E:GLU188 2.7 30.2 1.0 O E:SER222 2.7 24.7 1.0 OE2 E:GLU188 2.9 30.2 1.0 OD2 E:ASP181 3.0 29.9 1.0 CD E:GLU188 3.2 30.2 1.0 CG E:ASP235 3.6 25.5 1.0 CG E:ASP179 3.6 30.3 1.0 C E:LYS225 3.8 22.0 1.0 C E:SER222 3.8 24.7 1.0 CG E:ASP181 4.0 29.9 1.0 CB E:ASP235 4.2 25.5 1.0 OG1 E:THR228 4.2 24.0 1.0 CA E:CA801 4.2 29.6 1.0 N E:SER222 4.3 24.7 1.0 CB E:ASP179 4.3 30.3 1.0 CB E:SER221 4.3 30.0 1.0 OD1 E:ASP181 4.4 29.9 1.0 N E:LYS225 4.5 22.0 1.0 CA E:PRO223 4.5 22.5 1.0 OD1 E:ASP179 4.6 30.3 1.0 CG E:GLU188 4.6 30.2 1.0 N E:PRO223 4.6 22.5 1.0 OD1 E:ASP235 4.6 25.5 1.0 CA E:SER222 4.6 24.7 1.0 CA E:LYS225 4.7 22.0 1.0 OG E:SER222 4.7 24.7 1.0 N E:TRP226 4.7 22.3 1.0 CA E:TRP226 4.7 22.3 1.0 C E:PRO223 4.7 22.5 1.0 C E:TRP226 4.8 22.3 1.0 N E:GLU224 5.0 28.1 1.0 O E:TRP226 5.0 22.3 1.0

K.Zhou, S.Liu, N.J.Hardenbrook, Y.Cui, B.A.Krantz, Z.H.Zhou. Atomic Structures of Anthrax Prechannel Bound with Full-Length Lethal and Edema Factors. Structure V. 28 879 2020.
ISSN: ISSN 0969-2126
PubMed: 32521227
DOI: 10.1016/J.STR.2020.05.009