Calcium in PDB 6vzz: Crystal Structure of Glucokinase From Balamuthia Mandrillaris in Complex with Glucose

The structure of Crystal Structure of Glucokinase From Balamuthia Mandrillaris in Complex with Glucose, PDB code: 6vzz was solved by Seattle Structural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	49.74 / 2.65
Space group	P 41 3 2
Cell size a, b, c (Å), α, β, γ (°)	157.300, 157.300, 157.300, 90.00, 90.00, 90.00
R / Rfree (%)	17.4 / 20.4

The binding sites of Calcium atom in the Crystal Structure of Glucokinase From Balamuthia Mandrillaris in Complex with Glucose (pdb code 6vzz). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 3 binding sites of Calcium where determined in the Crystal Structure of Glucokinase From Balamuthia Mandrillaris in Complex with Glucose, PDB code: 6vzz:
Jump to Calcium binding site number: 1; 2; 3;

Calcium binding site 1 out of 3 in the Crystal Structure of Glucokinase From Balamuthia Mandrillaris in Complex with Glucose


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of Glucokinase From Balamuthia Mandrillaris in Complex with Glucose within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca402 b:53.8 occ:1.00 O A:HOH501 2.4 49.7 1.0 OE1 A:GLU82 2.5 49.8 1.0 OE2 A:GLU82 2.6 57.2 1.0 CD A:GLU82 2.9 52.8 1.0 CG A:GLU82 4.3 46.0 1.0 O A:HOH521 4.5 45.1 1.0 O A:HOH558 4.5 49.7 1.0

Calcium binding site 2 out of 3 in the Crystal Structure of Glucokinase From Balamuthia Mandrillaris in Complex with Glucose


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Crystal Structure of Glucokinase From Balamuthia Mandrillaris in Complex with Glucose within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca403 b:58.6 occ:0.50 OE1 A:GLU235 2.5 62.3 1.0 OE2 A:GLU235 2.8 63.0 1.0 ND2 A:ASN239 2.8 65.3 1.0 CD A:GLU235 2.9 61.6 1.0 CG A:ASN239 3.3 56.8 1.0 OD1 A:ASN239 3.4 61.9 1.0 CG A:GLU235 4.4 54.1 1.0 CA A:ASN239 4.4 53.6 1.0 CB A:ASN239 4.5 53.3 1.0 O A:ASN239 4.8 52.6 1.0 C A:ASN239 4.8 54.7 1.0

Calcium binding site 3 out of 3 in the Crystal Structure of Glucokinase From Balamuthia Mandrillaris in Complex with Glucose


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Crystal Structure of Glucokinase From Balamuthia Mandrillaris in Complex with Glucose within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca404 b:78.8 occ:1.00 O A:HOH543 2.3 66.0 1.0 O A:PRO172 2.5 49.3 1.0 OD1 A:ASP173 2.7 58.3 1.0 O A:HOH565 2.8 55.6 1.0 O A:HOH555 3.1 51.9 1.0 C A:PRO172 3.7 46.3 1.0 CG A:ASP173 3.8 49.2 1.0 CA A:ASP173 4.2 44.8 1.0 N A:ASP173 4.4 45.8 1.0 O A:SER191 4.5 50.1 1.0 CB A:ASP173 4.6 43.2 1.0 OD2 A:ASP173 4.7 53.0 1.0 CB A:SER191 4.7 48.7 1.0 CB A:PRO172 4.7 47.0 1.0 CA A:PRO172 4.8 48.1 1.0

J.Abendroth, D.M.Dranow, D.D.Lorimer, P.S.Horanyi, T.E.Edwards. Crystal Structure of Glucokinase From Balamuthia Mandrillaris in Complex with Glucose To Be Published.