Calcium in PDB 6w98: Single-Particle Cryo-Em Structure of Arabinofuranosyltransferase Aftd From Mycobacteria

The binding sites of Calcium atom in the Single-Particle Cryo-Em Structure of Arabinofuranosyltransferase Aftd From Mycobacteria (pdb code 6w98). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Single-Particle Cryo-Em Structure of Arabinofuranosyltransferase Aftd From Mycobacteria, PDB code: 6w98:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in the Single-Particle Cryo-Em Structure of Arabinofuranosyltransferase Aftd From Mycobacteria


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Single-Particle Cryo-Em Structure of Arabinofuranosyltransferase Aftd From Mycobacteria within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca2001 b:73.0 occ:1.00 O A:ALA735 2.1 72.6 1.0 OE2 A:GLU839 2.3 75.6 1.0 OG1 A:THR743 2.3 75.5 1.0 O A:THR743 2.4 75.5 1.0 O A:THR838 2.4 74.7 1.0 O A:ASP740 2.4 80.6 1.0 OD1 A:ASP738 2.4 77.1 1.0 C A:THR743 3.3 75.5 1.0 C A:ALA735 3.3 72.6 1.0 O A:ASP738 3.4 77.1 1.0 CG A:ASP738 3.5 77.1 1.0 CB A:THR743 3.5 75.5 1.0 CD A:GLU839 3.6 75.6 1.0 C A:THR838 3.6 74.7 1.0 C A:ASP740 3.6 80.6 1.0 CA A:THR743 3.8 75.5 1.0 OD2 A:ASP738 4.0 77.1 1.0 N A:THR743 4.0 75.5 1.0 CA A:ALA736 4.1 72.2 1.0 N A:ALA736 4.2 72.2 1.0 CA A:THR838 4.2 74.7 1.0 C A:ASP738 4.3 77.1 1.0 OE1 A:GLU839 4.3 75.6 1.0 N A:ASP740 4.3 80.6 1.0 CA A:ALA735 4.3 72.6 1.0 CA A:ASP740 4.4 80.6 1.0 N A:SER744 4.4 75.3 1.0 CB A:ASP740 4.5 80.6 1.0 C A:ALA736 4.5 72.2 1.0 CG A:GLU839 4.5 75.6 1.0 N A:ASN741 4.6 79.2 1.0 N A:GLU839 4.6 75.6 1.0 CB A:THR838 4.7 74.7 1.0 CB A:ASP738 4.7 77.1 1.0 CB A:ALA735 4.7 72.6 1.0 CG2 A:THR743 4.7 75.5 1.0 CA A:ASN741 4.8 79.2 1.0 N A:ASP738 4.8 77.1 1.0 CA A:ASP738 4.8 77.1 1.0 CA A:SER744 4.9 75.3 1.0 O A:ALA736 4.9 72.2 1.0 CA A:GLU839 4.9 75.6 1.0 N A:ILE737 5.0 75.5 1.0 C A:ARG739 5.0 81.4 1.0

Calcium binding site 2 out of 2 in the Single-Particle Cryo-Em Structure of Arabinofuranosyltransferase Aftd From Mycobacteria


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Single-Particle Cryo-Em Structure of Arabinofuranosyltransferase Aftd From Mycobacteria within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca2002 b:88.4 occ:1.00 O A:ALA1075 2.2 87.3 1.0 O A:ALA962 2.2 87.2 1.0 O A:ASP967 2.3 90.3 1.0 OG1 A:THR970 2.3 85.3 1.0 O A:THR970 2.4 85.3 1.0 OD1 A:ASP965 2.4 93.5 1.0 CG A:ASP965 3.2 93.5 1.0 C A:ALA1075 3.4 87.3 1.0 C A:THR970 3.4 85.3 1.0 C A:ALA962 3.4 87.2 1.0 C A:ASP967 3.4 90.3 1.0 OD2 A:ASP965 3.4 93.5 1.0 CB A:THR970 3.6 85.3 1.0 CA A:THR970 3.8 85.3 1.0 N A:ASP967 3.9 90.3 1.0 N A:THR970 3.9 85.3 1.0 CA A:ALA1075 4.1 87.3 1.0 CA A:ASP967 4.2 90.3 1.0 CA A:ALA962 4.2 87.2 1.0 N A:GLU1076 4.4 91.9 1.0 N A:ALA963 4.4 91.0 1.0 N A:PRO968 4.4 87.2 1.0 CB A:ALA962 4.5 87.2 1.0 CA A:PRO968 4.5 87.2 1.0 CA A:ALA963 4.5 91.0 1.0 CB A:ASP967 4.5 90.3 1.0 CA A:GLU1076 4.5 91.9 1.0 N A:ASP965 4.5 93.5 1.0 C A:ALA963 4.6 91.0 1.0 N A:VAL971 4.6 84.7 1.0 CB A:GLU1076 4.6 91.9 1.0 CB A:ASP965 4.6 93.5 1.0 N A:GLY966 4.7 94.2 1.0 CG2 A:THR970 4.7 85.3 1.0 N A:THR964 4.7 95.4 1.0 C A:PRO968 4.8 87.2 1.0 CB A:ALA1075 4.8 87.3 1.0 O A:ALA963 4.9 91.0 1.0 C A:GLY966 5.0 94.2 1.0

Y.Z.Tan, L.Zhang, J.Rodrigues, R.B.Zheng, S.I.Giacometti, A.L.Rosario, B.Kloss, V.P.Dandey, H.Wei, R.Brunton, A.M.Raczkowski, D.Athayde, M.J.Catalao, M.Pimentel, O.B.Clarke, T.L.Lowary, M.Archer, M.Niederweis, C.S.Potter, B.Carragher, F.Mancia. Cryo-Em Structures and Regulation of Arabinofuranosyltransferase Aftd From Mycobacteria Mol.Cell 2020.
ISSN: ISSN 1097-2765
DOI: 10.1016/J.MOLCEL.2020.04.014