Calcium in PDB 6wby: Single-Particle Cryo-Em Structure of Arabinofuranosyltransferase Aftd From Mycobacteria, Mutant R1389S Class 2
Calcium Binding Sites:
The binding sites of Calcium atom in the Single-Particle Cryo-Em Structure of Arabinofuranosyltransferase Aftd From Mycobacteria, Mutant R1389S Class 2
(pdb code 6wby). This binding sites where shown within
5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the
Single-Particle Cryo-Em Structure of Arabinofuranosyltransferase Aftd From Mycobacteria, Mutant R1389S Class 2, PDB code: 6wby:
Jump to Calcium binding site number:
1;
2;
Calcium binding site 1 out
of 2 in 6wby
Go back to
Calcium Binding Sites List in 6wby
Calcium binding site 1 out
of 2 in the Single-Particle Cryo-Em Structure of Arabinofuranosyltransferase Aftd From Mycobacteria, Mutant R1389S Class 2
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 1 of Single-Particle Cryo-Em Structure of Arabinofuranosyltransferase Aftd From Mycobacteria, Mutant R1389S Class 2 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca2001
b:24.3
occ:1.00
|
O
|
A:ALA735
|
2.3
|
19.5
|
1.0
|
O
|
A:THR743
|
2.4
|
22.9
|
1.0
|
O
|
A:ASP740
|
2.5
|
27.4
|
1.0
|
OE2
|
A:GLU839
|
2.5
|
24.1
|
1.0
|
OG1
|
A:THR743
|
2.6
|
22.9
|
1.0
|
OD1
|
A:ASP738
|
2.6
|
24.6
|
1.0
|
O
|
A:THR838
|
2.7
|
22.3
|
1.0
|
O
|
A:ASP738
|
3.3
|
24.6
|
1.0
|
C
|
A:THR743
|
3.4
|
22.9
|
1.0
|
C
|
A:ALA735
|
3.6
|
19.5
|
1.0
|
C
|
A:ASP740
|
3.6
|
27.4
|
1.0
|
CG
|
A:ASP738
|
3.7
|
24.6
|
1.0
|
CD
|
A:GLU839
|
3.7
|
24.1
|
1.0
|
C
|
A:THR838
|
3.8
|
22.3
|
1.0
|
CB
|
A:THR743
|
3.9
|
22.9
|
1.0
|
CA
|
A:THR743
|
4.1
|
22.9
|
1.0
|
C
|
A:ASP738
|
4.2
|
24.6
|
1.0
|
N
|
A:THR743
|
4.2
|
22.9
|
1.0
|
N
|
A:ASP740
|
4.3
|
27.4
|
1.0
|
OD2
|
A:ASP738
|
4.3
|
24.6
|
1.0
|
CA
|
A:ASP740
|
4.3
|
27.4
|
1.0
|
CB
|
A:ASP740
|
4.4
|
27.4
|
1.0
|
CA
|
A:THR838
|
4.4
|
22.3
|
1.0
|
OE1
|
A:GLU839
|
4.4
|
24.1
|
1.0
|
N
|
A:SER744
|
4.4
|
22.4
|
1.0
|
N
|
A:ALA736
|
4.5
|
19.2
|
1.0
|
CA
|
A:ALA735
|
4.5
|
19.5
|
1.0
|
CA
|
A:ALA736
|
4.5
|
19.2
|
1.0
|
N
|
A:ASN741
|
4.7
|
25.4
|
1.0
|
CB
|
A:THR838
|
4.7
|
22.3
|
1.0
|
N
|
A:ASP738
|
4.7
|
24.6
|
1.0
|
CA
|
A:SER744
|
4.7
|
22.4
|
1.0
|
CB
|
A:ALA735
|
4.8
|
19.5
|
1.0
|
CG
|
A:GLU839
|
4.8
|
24.1
|
1.0
|
CB
|
A:ASP738
|
4.8
|
24.6
|
1.0
|
CA
|
A:ASP738
|
4.8
|
24.6
|
1.0
|
N
|
A:ILE737
|
4.8
|
23.5
|
1.0
|
C
|
A:ALA736
|
4.9
|
19.2
|
1.0
|
CA
|
A:ASN741
|
4.9
|
25.4
|
1.0
|
CG2
|
A:THR743
|
4.9
|
22.9
|
1.0
|
N
|
A:GLU839
|
4.9
|
24.1
|
1.0
|
C
|
A:ARG739
|
5.0
|
28.5
|
1.0
|
|
Calcium binding site 2 out
of 2 in 6wby
Go back to
Calcium Binding Sites List in 6wby
Calcium binding site 2 out
of 2 in the Single-Particle Cryo-Em Structure of Arabinofuranosyltransferase Aftd From Mycobacteria, Mutant R1389S Class 2
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 2 of Single-Particle Cryo-Em Structure of Arabinofuranosyltransferase Aftd From Mycobacteria, Mutant R1389S Class 2 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca2002
b:45.8
occ:1.00
|
O
|
A:ALA962
|
2.1
|
47.2
|
1.0
|
O
|
A:ASP967
|
2.3
|
49.0
|
1.0
|
O
|
A:THR970
|
2.3
|
42.0
|
1.0
|
OD1
|
A:ASP965
|
2.4
|
52.2
|
1.0
|
OG1
|
A:THR970
|
2.4
|
42.0
|
1.0
|
O
|
A:ALA1075
|
2.5
|
44.5
|
1.0
|
C
|
A:ALA962
|
3.3
|
47.2
|
1.0
|
CG
|
A:ASP965
|
3.3
|
52.2
|
1.0
|
C
|
A:THR970
|
3.4
|
42.0
|
1.0
|
C
|
A:ASP967
|
3.4
|
49.0
|
1.0
|
CB
|
A:THR970
|
3.6
|
42.0
|
1.0
|
OD2
|
A:ASP965
|
3.6
|
52.2
|
1.0
|
C
|
A:ALA1075
|
3.7
|
44.5
|
1.0
|
CA
|
A:THR970
|
3.9
|
42.0
|
1.0
|
N
|
A:ASP967
|
3.9
|
49.0
|
1.0
|
N
|
A:THR970
|
3.9
|
42.0
|
1.0
|
CA
|
A:ALA962
|
4.0
|
47.2
|
1.0
|
CA
|
A:ASP967
|
4.1
|
49.0
|
1.0
|
CB
|
A:ASP967
|
4.3
|
49.0
|
1.0
|
N
|
A:ALA963
|
4.3
|
48.3
|
1.0
|
CB
|
A:ALA962
|
4.3
|
47.2
|
1.0
|
CA
|
A:ALA1075
|
4.4
|
44.5
|
1.0
|
N
|
A:ASP965
|
4.4
|
52.2
|
1.0
|
N
|
A:PRO968
|
4.5
|
45.4
|
1.0
|
CA
|
A:ALA963
|
4.5
|
48.3
|
1.0
|
N
|
A:VAL971
|
4.5
|
42.7
|
1.0
|
CG2
|
A:THR970
|
4.6
|
42.0
|
1.0
|
CA
|
A:PRO968
|
4.6
|
45.4
|
1.0
|
N
|
A:GLY966
|
4.7
|
54.1
|
1.0
|
C
|
A:ALA963
|
4.7
|
48.3
|
1.0
|
CB
|
A:ASP965
|
4.7
|
52.2
|
1.0
|
N
|
A:GLU1076
|
4.7
|
52.7
|
1.0
|
N
|
A:THR964
|
4.8
|
55.6
|
1.0
|
CB
|
A:GLU1076
|
4.8
|
52.7
|
1.0
|
CA
|
A:GLU1076
|
4.8
|
52.7
|
1.0
|
C
|
A:PRO968
|
4.9
|
45.4
|
1.0
|
CA
|
A:ASP965
|
4.9
|
52.2
|
1.0
|
CA
|
A:VAL971
|
4.9
|
42.7
|
1.0
|
CB
|
A:ALA1075
|
4.9
|
44.5
|
1.0
|
C
|
A:ASP965
|
5.0
|
52.2
|
1.0
|
C
|
A:GLY966
|
5.0
|
54.1
|
1.0
|
|
Reference:
Y.Z.Tan,
L.Zhang,
J.Rodrigues,
R.B.Zheng,
S.I.Giacometti,
A.L.Rosario,
B.Kloss,
V.P.Dandey,
H.Wei,
R.Brunton,
A.M.Raczkowski,
D.Athayde,
M.J.Catalao,
M.Pimentel,
O.B.Clarke,
T.L.Lowary,
M.Archer,
M.Niederweis,
C.S.Potter,
B.Carragher,
F.Mancia.
Cryo-Em Structures and Regulation of Arabinofuranosyltransferase Aftd From Mycobacteria Mol.Cell 2020.
ISSN: ISSN 1097-2765
DOI: 10.1016/J.MOLCEL.2020.04.014
Page generated: Sat Dec 12 07:51:50 2020
|