Calcium in PDB 6wby: Single-Particle Cryo-Em Structure of Arabinofuranosyltransferase Aftd From Mycobacteria, Mutant R1389S Class 2

The binding sites of Calcium atom in the Single-Particle Cryo-Em Structure of Arabinofuranosyltransferase Aftd From Mycobacteria, Mutant R1389S Class 2 (pdb code 6wby). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Single-Particle Cryo-Em Structure of Arabinofuranosyltransferase Aftd From Mycobacteria, Mutant R1389S Class 2, PDB code: 6wby:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in the Single-Particle Cryo-Em Structure of Arabinofuranosyltransferase Aftd From Mycobacteria, Mutant R1389S Class 2


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Single-Particle Cryo-Em Structure of Arabinofuranosyltransferase Aftd From Mycobacteria, Mutant R1389S Class 2 within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca2001 b:24.3 occ:1.00 O A:ALA735 2.3 19.5 1.0 O A:THR743 2.4 22.9 1.0 O A:ASP740 2.5 27.4 1.0 OE2 A:GLU839 2.5 24.1 1.0 OG1 A:THR743 2.6 22.9 1.0 OD1 A:ASP738 2.6 24.6 1.0 O A:THR838 2.7 22.3 1.0 O A:ASP738 3.3 24.6 1.0 C A:THR743 3.4 22.9 1.0 C A:ALA735 3.6 19.5 1.0 C A:ASP740 3.6 27.4 1.0 CG A:ASP738 3.7 24.6 1.0 CD A:GLU839 3.7 24.1 1.0 C A:THR838 3.8 22.3 1.0 CB A:THR743 3.9 22.9 1.0 CA A:THR743 4.1 22.9 1.0 C A:ASP738 4.2 24.6 1.0 N A:THR743 4.2 22.9 1.0 N A:ASP740 4.3 27.4 1.0 OD2 A:ASP738 4.3 24.6 1.0 CA A:ASP740 4.3 27.4 1.0 CB A:ASP740 4.4 27.4 1.0 CA A:THR838 4.4 22.3 1.0 OE1 A:GLU839 4.4 24.1 1.0 N A:SER744 4.4 22.4 1.0 N A:ALA736 4.5 19.2 1.0 CA A:ALA735 4.5 19.5 1.0 CA A:ALA736 4.5 19.2 1.0 N A:ASN741 4.7 25.4 1.0 CB A:THR838 4.7 22.3 1.0 N A:ASP738 4.7 24.6 1.0 CA A:SER744 4.7 22.4 1.0 CB A:ALA735 4.8 19.5 1.0 CG A:GLU839 4.8 24.1 1.0 CB A:ASP738 4.8 24.6 1.0 CA A:ASP738 4.8 24.6 1.0 N A:ILE737 4.8 23.5 1.0 C A:ALA736 4.9 19.2 1.0 CA A:ASN741 4.9 25.4 1.0 CG2 A:THR743 4.9 22.9 1.0 N A:GLU839 4.9 24.1 1.0 C A:ARG739 5.0 28.5 1.0

Calcium binding site 2 out of 2 in the Single-Particle Cryo-Em Structure of Arabinofuranosyltransferase Aftd From Mycobacteria, Mutant R1389S Class 2


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Single-Particle Cryo-Em Structure of Arabinofuranosyltransferase Aftd From Mycobacteria, Mutant R1389S Class 2 within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca2002 b:45.8 occ:1.00 O A:ALA962 2.1 47.2 1.0 O A:ASP967 2.3 49.0 1.0 O A:THR970 2.3 42.0 1.0 OD1 A:ASP965 2.4 52.2 1.0 OG1 A:THR970 2.4 42.0 1.0 O A:ALA1075 2.5 44.5 1.0 C A:ALA962 3.3 47.2 1.0 CG A:ASP965 3.3 52.2 1.0 C A:THR970 3.4 42.0 1.0 C A:ASP967 3.4 49.0 1.0 CB A:THR970 3.6 42.0 1.0 OD2 A:ASP965 3.6 52.2 1.0 C A:ALA1075 3.7 44.5 1.0 CA A:THR970 3.9 42.0 1.0 N A:ASP967 3.9 49.0 1.0 N A:THR970 3.9 42.0 1.0 CA A:ALA962 4.0 47.2 1.0 CA A:ASP967 4.1 49.0 1.0 CB A:ASP967 4.3 49.0 1.0 N A:ALA963 4.3 48.3 1.0 CB A:ALA962 4.3 47.2 1.0 CA A:ALA1075 4.4 44.5 1.0 N A:ASP965 4.4 52.2 1.0 N A:PRO968 4.5 45.4 1.0 CA A:ALA963 4.5 48.3 1.0 N A:VAL971 4.5 42.7 1.0 CG2 A:THR970 4.6 42.0 1.0 CA A:PRO968 4.6 45.4 1.0 N A:GLY966 4.7 54.1 1.0 C A:ALA963 4.7 48.3 1.0 CB A:ASP965 4.7 52.2 1.0 N A:GLU1076 4.7 52.7 1.0 N A:THR964 4.8 55.6 1.0 CB A:GLU1076 4.8 52.7 1.0 CA A:GLU1076 4.8 52.7 1.0 C A:PRO968 4.9 45.4 1.0 CA A:ASP965 4.9 52.2 1.0 CA A:VAL971 4.9 42.7 1.0 CB A:ALA1075 4.9 44.5 1.0 C A:ASP965 5.0 52.2 1.0 C A:GLY966 5.0 54.1 1.0

Y.Z.Tan, L.Zhang, J.Rodrigues, R.B.Zheng, S.I.Giacometti, A.L.Rosario, B.Kloss, V.P.Dandey, H.Wei, R.Brunton, A.M.Raczkowski, D.Athayde, M.J.Catalao, M.Pimentel, O.B.Clarke, T.L.Lowary, M.Archer, M.Niederweis, C.S.Potter, B.Carragher, F.Mancia. Cryo-Em Structures and Regulation of Arabinofuranosyltransferase Aftd From Mycobacteria Mol.Cell 2020.
ISSN: ISSN 1097-2765
DOI: 10.1016/J.MOLCEL.2020.04.014