Calcium in PDB 6whg: PI3P and Calcium Bound Full-Length TRPY1 in Detergent
Calcium Binding Sites:
The binding sites of Calcium atom in the PI3P and Calcium Bound Full-Length TRPY1 in Detergent
(pdb code 6whg). This binding sites where shown within
5.0 Angstroms radius around Calcium atom.
In total 8 binding sites of Calcium where determined in the
PI3P and Calcium Bound Full-Length TRPY1 in Detergent, PDB code: 6whg:
Jump to Calcium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
Calcium binding site 1 out
of 8 in 6whg
Go back to
Calcium Binding Sites List in 6whg
Calcium binding site 1 out
of 8 in the PI3P and Calcium Bound Full-Length TRPY1 in Detergent
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 1 of PI3P and Calcium Bound Full-Length TRPY1 in Detergent within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca701
b:49.6
occ:1.00
|
OD2
|
A:ASP401
|
2.5
|
47.3
|
1.0
|
|
OD1
|
A:ASP405
|
2.6
|
46.9
|
1.0
|
|
O
|
A:LYS403
|
2.6
|
46.8
|
1.0
|
|
OD1
|
A:ASP401
|
2.6
|
47.3
|
1.0
|
|
OD1
|
A:ASP398
|
2.9
|
41.1
|
1.0
|
|
CG
|
A:ASP401
|
2.9
|
47.3
|
1.0
|
|
O
|
A:ASP398
|
3.1
|
41.1
|
1.0
|
|
CG
|
A:ASP405
|
3.4
|
46.9
|
1.0
|
|
C
|
A:LYS403
|
3.8
|
46.8
|
1.0
|
|
CG
|
A:ASP398
|
3.9
|
41.1
|
1.0
|
|
OD2
|
A:ASP405
|
3.9
|
46.9
|
1.0
|
|
N
|
A:ASP405
|
4.0
|
46.9
|
1.0
|
|
C
|
A:ASP398
|
4.0
|
41.1
|
1.0
|
|
CA
|
A:ASP398
|
4.2
|
41.1
|
1.0
|
|
CB
|
A:ASP405
|
4.3
|
46.9
|
1.0
|
|
CB
|
A:ASP401
|
4.4
|
47.3
|
1.0
|
|
CA
|
A:ARG404
|
4.6
|
47.2
|
1.0
|
|
OD2
|
A:ASP398
|
4.6
|
41.1
|
1.0
|
|
N
|
A:ARG404
|
4.6
|
47.2
|
1.0
|
|
CB
|
A:ASP398
|
4.7
|
41.1
|
1.0
|
|
N
|
A:LYS403
|
4.7
|
46.8
|
1.0
|
|
C
|
A:ARG404
|
4.8
|
47.2
|
1.0
|
|
CA
|
A:ASP405
|
4.8
|
46.9
|
1.0
|
|
CA
|
A:LYS403
|
4.8
|
46.8
|
1.0
|
|
CE1
|
A:PHE430
|
4.8
|
46.0
|
1.0
|
|
Calcium binding site 2 out
of 8 in 6whg
Go back to
Calcium Binding Sites List in 6whg
Calcium binding site 2 out
of 8 in the PI3P and Calcium Bound Full-Length TRPY1 in Detergent
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 2 of PI3P and Calcium Bound Full-Length TRPY1 in Detergent within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca702
b:48.0
occ:1.00
|
OD2
|
A:ASP569
|
2.5
|
50.1
|
1.0
|
|
O
|
A:ASP566
|
2.6
|
45.8
|
1.0
|
|
O
|
A:THR563
|
2.6
|
42.2
|
1.0
|
|
OD1
|
A:ASP562
|
3.2
|
47.2
|
1.0
|
|
OD1
|
D:ASN161
|
3.5
|
49.2
|
1.0
|
|
CG
|
A:ASP569
|
3.5
|
50.1
|
1.0
|
|
OD1
|
A:ASP569
|
3.7
|
50.1
|
1.0
|
|
C
|
A:ASP566
|
3.7
|
45.8
|
1.0
|
|
C
|
A:THR563
|
3.8
|
42.2
|
1.0
|
|
OE1
|
A:GLN591
|
3.8
|
59.3
|
1.0
|
|
NE2
|
A:GLN591
|
3.8
|
59.3
|
1.0
|
|
CA
|
A:LEU567
|
4.1
|
49.9
|
1.0
|
|
CD
|
A:GLN591
|
4.2
|
59.3
|
1.0
|
|
C
|
A:LEU567
|
4.2
|
49.9
|
1.0
|
|
N
|
A:THR563
|
4.3
|
42.2
|
1.0
|
|
C
|
A:ASP562
|
4.4
|
47.2
|
1.0
|
|
N
|
A:LEU567
|
4.4
|
49.9
|
1.0
|
|
O
|
A:LEU567
|
4.4
|
49.9
|
1.0
|
|
CG
|
A:ASP562
|
4.4
|
47.2
|
1.0
|
|
CA
|
A:PRO564
|
4.5
|
37.7
|
1.0
|
|
O
|
A:ASP562
|
4.5
|
47.2
|
1.0
|
|
CG
|
D:ASN161
|
4.6
|
49.2
|
1.0
|
|
N
|
A:PRO564
|
4.6
|
37.7
|
1.0
|
|
CA
|
A:THR563
|
4.7
|
42.2
|
1.0
|
|
O
|
A:PRO564
|
4.7
|
37.7
|
1.0
|
|
N
|
A:THR568
|
4.8
|
51.4
|
1.0
|
|
C
|
A:PRO564
|
4.8
|
37.7
|
1.0
|
|
N
|
A:ASP569
|
4.8
|
50.1
|
1.0
|
|
O
|
A:ASP569
|
4.9
|
50.1
|
1.0
|
|
CA
|
A:ASP566
|
4.9
|
45.8
|
1.0
|
|
CB
|
A:ASP569
|
4.9
|
50.1
|
1.0
|
|
CA
|
A:ASP562
|
4.9
|
47.2
|
1.0
|
|
N
|
A:ASP566
|
5.0
|
45.8
|
1.0
|
|
Calcium binding site 3 out
of 8 in 6whg
Go back to
Calcium Binding Sites List in 6whg
Calcium binding site 3 out
of 8 in the PI3P and Calcium Bound Full-Length TRPY1 in Detergent
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 3 of PI3P and Calcium Bound Full-Length TRPY1 in Detergent within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ca701
b:49.2
occ:1.00
|
OD2
|
B:ASP401
|
2.5
|
47.6
|
1.0
|
|
OD1
|
B:ASP405
|
2.6
|
46.6
|
1.0
|
|
O
|
B:LYS403
|
2.6
|
46.7
|
1.0
|
|
OD1
|
B:ASP401
|
2.6
|
47.6
|
1.0
|
|
OD1
|
B:ASP398
|
2.9
|
41.1
|
1.0
|
|
CG
|
B:ASP401
|
2.9
|
47.6
|
1.0
|
|
O
|
B:ASP398
|
3.1
|
41.1
|
1.0
|
|
CG
|
B:ASP405
|
3.4
|
46.6
|
1.0
|
|
C
|
B:LYS403
|
3.8
|
46.7
|
1.0
|
|
CG
|
B:ASP398
|
3.9
|
41.1
|
1.0
|
|
OD2
|
B:ASP405
|
3.9
|
46.6
|
1.0
|
|
N
|
B:ASP405
|
4.0
|
46.6
|
1.0
|
|
C
|
B:ASP398
|
4.0
|
41.1
|
1.0
|
|
CA
|
B:ASP398
|
4.2
|
41.1
|
1.0
|
|
CB
|
B:ASP405
|
4.3
|
46.6
|
1.0
|
|
CB
|
B:ASP401
|
4.4
|
47.6
|
1.0
|
|
CA
|
B:ARG404
|
4.6
|
46.7
|
1.0
|
|
OD2
|
B:ASP398
|
4.6
|
41.1
|
1.0
|
|
N
|
B:ARG404
|
4.6
|
46.7
|
1.0
|
|
CB
|
B:ASP398
|
4.7
|
41.1
|
1.0
|
|
N
|
B:LYS403
|
4.7
|
46.7
|
1.0
|
|
C
|
B:ARG404
|
4.8
|
46.7
|
1.0
|
|
CA
|
B:ASP405
|
4.8
|
46.6
|
1.0
|
|
CA
|
B:LYS403
|
4.8
|
46.7
|
1.0
|
|
CE1
|
B:PHE430
|
4.8
|
46.4
|
1.0
|
|
Calcium binding site 4 out
of 8 in 6whg
Go back to
Calcium Binding Sites List in 6whg
Calcium binding site 4 out
of 8 in the PI3P and Calcium Bound Full-Length TRPY1 in Detergent
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 4 of PI3P and Calcium Bound Full-Length TRPY1 in Detergent within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ca702
b:46.4
occ:1.00
|
OD2
|
B:ASP569
|
2.5
|
49.7
|
1.0
|
|
O
|
B:ASP566
|
2.6
|
45.4
|
1.0
|
|
O
|
B:THR563
|
2.6
|
41.5
|
1.0
|
|
OD1
|
B:ASP562
|
3.2
|
46.8
|
1.0
|
|
CG
|
B:ASP569
|
3.5
|
49.7
|
1.0
|
|
OD1
|
A:ASN161
|
3.6
|
49.3
|
1.0
|
|
OD1
|
B:ASP569
|
3.7
|
49.7
|
1.0
|
|
C
|
B:ASP566
|
3.7
|
45.4
|
1.0
|
|
C
|
B:THR563
|
3.8
|
41.5
|
1.0
|
|
OE1
|
B:GLN591
|
3.8
|
59.1
|
1.0
|
|
NE2
|
B:GLN591
|
3.8
|
59.1
|
1.0
|
|
CA
|
B:LEU567
|
4.1
|
49.9
|
1.0
|
|
CD
|
B:GLN591
|
4.2
|
59.1
|
1.0
|
|
C
|
B:LEU567
|
4.2
|
49.9
|
1.0
|
|
N
|
B:THR563
|
4.3
|
41.5
|
1.0
|
|
C
|
B:ASP562
|
4.4
|
46.8
|
1.0
|
|
N
|
B:LEU567
|
4.4
|
49.9
|
1.0
|
|
O
|
B:LEU567
|
4.4
|
49.9
|
1.0
|
|
CG
|
B:ASP562
|
4.4
|
46.8
|
1.0
|
|
CA
|
B:PRO564
|
4.5
|
37.5
|
1.0
|
|
O
|
B:ASP562
|
4.5
|
46.8
|
1.0
|
|
N
|
B:PRO564
|
4.6
|
37.5
|
1.0
|
|
CA
|
B:THR563
|
4.7
|
41.5
|
1.0
|
|
CG
|
A:ASN161
|
4.7
|
49.3
|
1.0
|
|
O
|
B:PRO564
|
4.7
|
37.5
|
1.0
|
|
N
|
B:THR568
|
4.8
|
51.7
|
1.0
|
|
C
|
B:PRO564
|
4.8
|
37.5
|
1.0
|
|
N
|
B:ASP569
|
4.8
|
49.7
|
1.0
|
|
O
|
B:ASP569
|
4.9
|
49.7
|
1.0
|
|
CA
|
B:ASP566
|
4.9
|
45.4
|
1.0
|
|
CB
|
B:ASP569
|
4.9
|
49.7
|
1.0
|
|
CA
|
B:ASP562
|
4.9
|
46.8
|
1.0
|
|
N
|
B:ASP566
|
5.0
|
45.4
|
1.0
|
|
Calcium binding site 5 out
of 8 in 6whg
Go back to
Calcium Binding Sites List in 6whg
Calcium binding site 5 out
of 8 in the PI3P and Calcium Bound Full-Length TRPY1 in Detergent
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 5 of PI3P and Calcium Bound Full-Length TRPY1 in Detergent within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Ca701
b:48.2
occ:1.00
|
OD2
|
C:ASP401
|
2.5
|
46.9
|
1.0
|
|
OD1
|
C:ASP405
|
2.6
|
46.0
|
1.0
|
|
O
|
C:LYS403
|
2.6
|
45.9
|
1.0
|
|
OD1
|
C:ASP401
|
2.6
|
46.9
|
1.0
|
|
OD1
|
C:ASP398
|
2.9
|
40.8
|
1.0
|
|
CG
|
C:ASP401
|
2.9
|
46.9
|
1.0
|
|
O
|
C:ASP398
|
3.1
|
40.8
|
1.0
|
|
CG
|
C:ASP405
|
3.4
|
46.0
|
1.0
|
|
C
|
C:LYS403
|
3.8
|
45.9
|
1.0
|
|
CG
|
C:ASP398
|
3.9
|
40.8
|
1.0
|
|
OD2
|
C:ASP405
|
3.9
|
46.0
|
1.0
|
|
N
|
C:ASP405
|
4.0
|
46.0
|
1.0
|
|
C
|
C:ASP398
|
4.0
|
40.8
|
1.0
|
|
CA
|
C:ASP398
|
4.2
|
40.8
|
1.0
|
|
CB
|
C:ASP405
|
4.3
|
46.0
|
1.0
|
|
CB
|
C:ASP401
|
4.4
|
46.9
|
1.0
|
|
CA
|
C:ARG404
|
4.6
|
45.8
|
1.0
|
|
OD2
|
C:ASP398
|
4.6
|
40.8
|
1.0
|
|
N
|
C:ARG404
|
4.6
|
45.8
|
1.0
|
|
CB
|
C:ASP398
|
4.7
|
40.8
|
1.0
|
|
N
|
C:LYS403
|
4.7
|
45.9
|
1.0
|
|
C
|
C:ARG404
|
4.8
|
45.8
|
1.0
|
|
CA
|
C:ASP405
|
4.8
|
46.0
|
1.0
|
|
CE1
|
C:PHE430
|
4.8
|
46.2
|
1.0
|
|
CA
|
C:LYS403
|
4.8
|
45.9
|
1.0
|
|
Calcium binding site 6 out
of 8 in 6whg
Go back to
Calcium Binding Sites List in 6whg
Calcium binding site 6 out
of 8 in the PI3P and Calcium Bound Full-Length TRPY1 in Detergent
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 6 of PI3P and Calcium Bound Full-Length TRPY1 in Detergent within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Ca702
b:47.5
occ:1.00
|
OD2
|
C:ASP569
|
2.5
|
50.0
|
1.0
|
|
O
|
C:ASP566
|
2.6
|
45.4
|
1.0
|
|
O
|
C:THR563
|
2.6
|
42.0
|
1.0
|
|
OD1
|
C:ASP562
|
3.2
|
47.1
|
1.0
|
|
CG
|
C:ASP569
|
3.5
|
50.0
|
1.0
|
|
OD1
|
B:ASN161
|
3.5
|
49.7
|
1.0
|
|
OD1
|
C:ASP569
|
3.7
|
50.0
|
1.0
|
|
C
|
C:ASP566
|
3.7
|
45.4
|
1.0
|
|
C
|
C:THR563
|
3.8
|
42.0
|
1.0
|
|
OE1
|
C:GLN591
|
3.8
|
59.1
|
1.0
|
|
NE2
|
C:GLN591
|
3.8
|
59.1
|
1.0
|
|
CA
|
C:LEU567
|
4.1
|
49.7
|
1.0
|
|
CD
|
C:GLN591
|
4.2
|
59.1
|
1.0
|
|
C
|
C:LEU567
|
4.2
|
49.7
|
1.0
|
|
N
|
C:THR563
|
4.3
|
42.0
|
1.0
|
|
C
|
C:ASP562
|
4.4
|
47.1
|
1.0
|
|
N
|
C:LEU567
|
4.4
|
49.7
|
1.0
|
|
O
|
C:LEU567
|
4.4
|
49.7
|
1.0
|
|
CG
|
C:ASP562
|
4.4
|
47.1
|
1.0
|
|
CA
|
C:PRO564
|
4.5
|
37.9
|
1.0
|
|
O
|
C:ASP562
|
4.5
|
47.1
|
1.0
|
|
N
|
C:PRO564
|
4.6
|
37.9
|
1.0
|
|
CG
|
B:ASN161
|
4.7
|
49.7
|
1.0
|
|
CA
|
C:THR563
|
4.7
|
42.0
|
1.0
|
|
O
|
C:PRO564
|
4.7
|
37.9
|
1.0
|
|
N
|
C:THR568
|
4.8
|
51.4
|
1.0
|
|
C
|
C:PRO564
|
4.8
|
37.9
|
1.0
|
|
N
|
C:ASP569
|
4.8
|
50.0
|
1.0
|
|
O
|
C:ASP569
|
4.9
|
50.0
|
1.0
|
|
CA
|
C:ASP566
|
4.9
|
45.4
|
1.0
|
|
CB
|
C:ASP569
|
4.9
|
50.0
|
1.0
|
|
CA
|
C:ASP562
|
4.9
|
47.1
|
1.0
|
|
N
|
C:ASP566
|
5.0
|
45.4
|
1.0
|
|
Calcium binding site 7 out
of 8 in 6whg
Go back to
Calcium Binding Sites List in 6whg
Calcium binding site 7 out
of 8 in the PI3P and Calcium Bound Full-Length TRPY1 in Detergent
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 7 of PI3P and Calcium Bound Full-Length TRPY1 in Detergent within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Ca701
b:49.1
occ:1.00
|
OD2
|
D:ASP401
|
2.5
|
46.9
|
1.0
|
|
OD1
|
D:ASP405
|
2.6
|
46.1
|
1.0
|
|
O
|
D:LYS403
|
2.6
|
46.0
|
1.0
|
|
OD1
|
D:ASP401
|
2.6
|
46.9
|
1.0
|
|
OD1
|
D:ASP398
|
2.9
|
40.7
|
1.0
|
|
CG
|
D:ASP401
|
2.9
|
46.9
|
1.0
|
|
O
|
D:ASP398
|
3.1
|
40.7
|
1.0
|
|
CG
|
D:ASP405
|
3.4
|
46.1
|
1.0
|
|
C
|
D:LYS403
|
3.8
|
46.0
|
1.0
|
|
CG
|
D:ASP398
|
3.9
|
40.7
|
1.0
|
|
OD2
|
D:ASP405
|
3.9
|
46.1
|
1.0
|
|
N
|
D:ASP405
|
4.0
|
46.1
|
1.0
|
|
C
|
D:ASP398
|
4.0
|
40.7
|
1.0
|
|
CA
|
D:ASP398
|
4.2
|
40.7
|
1.0
|
|
CB
|
D:ASP405
|
4.3
|
46.1
|
1.0
|
|
CB
|
D:ASP401
|
4.4
|
46.9
|
1.0
|
|
CA
|
D:ARG404
|
4.6
|
46.3
|
1.0
|
|
OD2
|
D:ASP398
|
4.6
|
40.7
|
1.0
|
|
N
|
D:ARG404
|
4.6
|
46.3
|
1.0
|
|
CB
|
D:ASP398
|
4.6
|
40.7
|
1.0
|
|
N
|
D:LYS403
|
4.7
|
46.0
|
1.0
|
|
C
|
D:ARG404
|
4.8
|
46.3
|
1.0
|
|
CA
|
D:ASP405
|
4.8
|
46.1
|
1.0
|
|
CE1
|
D:PHE430
|
4.8
|
45.8
|
1.0
|
|
CA
|
D:LYS403
|
4.8
|
46.0
|
1.0
|
|
Calcium binding site 8 out
of 8 in 6whg
Go back to
Calcium Binding Sites List in 6whg
Calcium binding site 8 out
of 8 in the PI3P and Calcium Bound Full-Length TRPY1 in Detergent
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 8 of PI3P and Calcium Bound Full-Length TRPY1 in Detergent within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Ca702
b:48.1
occ:1.00
|
OD2
|
D:ASP569
|
2.5
|
49.6
|
1.0
|
|
O
|
D:ASP566
|
2.6
|
45.1
|
1.0
|
|
O
|
D:THR563
|
2.6
|
41.6
|
1.0
|
|
OD1
|
D:ASP562
|
3.2
|
47.0
|
1.0
|
|
CG
|
D:ASP569
|
3.5
|
49.6
|
1.0
|
|
OD1
|
C:ASN161
|
3.5
|
49.3
|
1.0
|
|
OD1
|
D:ASP569
|
3.7
|
49.6
|
1.0
|
|
C
|
D:ASP566
|
3.7
|
45.1
|
1.0
|
|
C
|
D:THR563
|
3.8
|
41.6
|
1.0
|
|
OE1
|
D:GLN591
|
3.8
|
58.8
|
1.0
|
|
NE2
|
D:GLN591
|
3.8
|
58.8
|
1.0
|
|
CA
|
D:LEU567
|
4.1
|
49.6
|
1.0
|
|
CD
|
D:GLN591
|
4.2
|
58.8
|
1.0
|
|
C
|
D:LEU567
|
4.2
|
49.6
|
1.0
|
|
N
|
D:THR563
|
4.3
|
41.6
|
1.0
|
|
C
|
D:ASP562
|
4.4
|
47.0
|
1.0
|
|
N
|
D:LEU567
|
4.4
|
49.6
|
1.0
|
|
O
|
D:LEU567
|
4.4
|
49.6
|
1.0
|
|
CG
|
D:ASP562
|
4.4
|
47.0
|
1.0
|
|
CA
|
D:PRO564
|
4.5
|
37.3
|
1.0
|
|
O
|
D:ASP562
|
4.5
|
47.0
|
1.0
|
|
N
|
D:PRO564
|
4.6
|
37.3
|
1.0
|
|
CG
|
C:ASN161
|
4.6
|
49.3
|
1.0
|
|
CA
|
D:THR563
|
4.7
|
41.6
|
1.0
|
|
O
|
D:PRO564
|
4.7
|
37.3
|
1.0
|
|
N
|
D:THR568
|
4.8
|
50.7
|
1.0
|
|
C
|
D:PRO564
|
4.8
|
37.3
|
1.0
|
|
N
|
D:ASP569
|
4.8
|
49.6
|
1.0
|
|
O
|
D:ASP569
|
4.9
|
49.6
|
1.0
|
|
CA
|
D:ASP566
|
4.9
|
45.1
|
1.0
|
|
CB
|
D:ASP569
|
4.9
|
49.6
|
1.0
|
|
CA
|
D:ASP562
|
4.9
|
47.0
|
1.0
|
|
N
|
D:ASP566
|
5.0
|
45.1
|
1.0
|
|
Reference:
T.Ahmed,
V.Y.Moiseenkova-Bell.
PI3P and Calcium Bound Full-Length TRPY1 in Detergent To Be Published.
Page generated: Sat Jul 10 10:53:20 2021
|
