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Calcium in PDB 6whg: PI3P and Calcium Bound Full-Length TRPY1 in Detergent

Calcium Binding Sites:

The binding sites of Calcium atom in the PI3P and Calcium Bound Full-Length TRPY1 in Detergent (pdb code 6whg). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 8 binding sites of Calcium where determined in the PI3P and Calcium Bound Full-Length TRPY1 in Detergent, PDB code: 6whg:
Jump to Calcium binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Calcium binding site 1 out of 8 in 6whg

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Calcium binding site 1 out of 8 in the PI3P and Calcium Bound Full-Length TRPY1 in Detergent


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of PI3P and Calcium Bound Full-Length TRPY1 in Detergent within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca701

b:49.6
occ:1.00
OD2 A:ASP401 2.5 47.3 1.0
OD1 A:ASP405 2.6 46.9 1.0
O A:LYS403 2.6 46.8 1.0
OD1 A:ASP401 2.6 47.3 1.0
OD1 A:ASP398 2.9 41.1 1.0
CG A:ASP401 2.9 47.3 1.0
O A:ASP398 3.1 41.1 1.0
CG A:ASP405 3.4 46.9 1.0
C A:LYS403 3.8 46.8 1.0
CG A:ASP398 3.9 41.1 1.0
OD2 A:ASP405 3.9 46.9 1.0
N A:ASP405 4.0 46.9 1.0
C A:ASP398 4.0 41.1 1.0
CA A:ASP398 4.2 41.1 1.0
CB A:ASP405 4.3 46.9 1.0
CB A:ASP401 4.4 47.3 1.0
CA A:ARG404 4.6 47.2 1.0
OD2 A:ASP398 4.6 41.1 1.0
N A:ARG404 4.6 47.2 1.0
CB A:ASP398 4.7 41.1 1.0
N A:LYS403 4.7 46.8 1.0
C A:ARG404 4.8 47.2 1.0
CA A:ASP405 4.8 46.9 1.0
CA A:LYS403 4.8 46.8 1.0
CE1 A:PHE430 4.8 46.0 1.0

Calcium binding site 2 out of 8 in 6whg

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Calcium binding site 2 out of 8 in the PI3P and Calcium Bound Full-Length TRPY1 in Detergent


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of PI3P and Calcium Bound Full-Length TRPY1 in Detergent within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca702

b:48.0
occ:1.00
OD2 A:ASP569 2.5 50.1 1.0
O A:ASP566 2.6 45.8 1.0
O A:THR563 2.6 42.2 1.0
OD1 A:ASP562 3.2 47.2 1.0
OD1 D:ASN161 3.5 49.2 1.0
CG A:ASP569 3.5 50.1 1.0
OD1 A:ASP569 3.7 50.1 1.0
C A:ASP566 3.7 45.8 1.0
C A:THR563 3.8 42.2 1.0
OE1 A:GLN591 3.8 59.3 1.0
NE2 A:GLN591 3.8 59.3 1.0
CA A:LEU567 4.1 49.9 1.0
CD A:GLN591 4.2 59.3 1.0
C A:LEU567 4.2 49.9 1.0
N A:THR563 4.3 42.2 1.0
C A:ASP562 4.4 47.2 1.0
N A:LEU567 4.4 49.9 1.0
O A:LEU567 4.4 49.9 1.0
CG A:ASP562 4.4 47.2 1.0
CA A:PRO564 4.5 37.7 1.0
O A:ASP562 4.5 47.2 1.0
CG D:ASN161 4.6 49.2 1.0
N A:PRO564 4.6 37.7 1.0
CA A:THR563 4.7 42.2 1.0
O A:PRO564 4.7 37.7 1.0
N A:THR568 4.8 51.4 1.0
C A:PRO564 4.8 37.7 1.0
N A:ASP569 4.8 50.1 1.0
O A:ASP569 4.9 50.1 1.0
CA A:ASP566 4.9 45.8 1.0
CB A:ASP569 4.9 50.1 1.0
CA A:ASP562 4.9 47.2 1.0
N A:ASP566 5.0 45.8 1.0

Calcium binding site 3 out of 8 in 6whg

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Calcium binding site 3 out of 8 in the PI3P and Calcium Bound Full-Length TRPY1 in Detergent


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of PI3P and Calcium Bound Full-Length TRPY1 in Detergent within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca701

b:49.2
occ:1.00
OD2 B:ASP401 2.5 47.6 1.0
OD1 B:ASP405 2.6 46.6 1.0
O B:LYS403 2.6 46.7 1.0
OD1 B:ASP401 2.6 47.6 1.0
OD1 B:ASP398 2.9 41.1 1.0
CG B:ASP401 2.9 47.6 1.0
O B:ASP398 3.1 41.1 1.0
CG B:ASP405 3.4 46.6 1.0
C B:LYS403 3.8 46.7 1.0
CG B:ASP398 3.9 41.1 1.0
OD2 B:ASP405 3.9 46.6 1.0
N B:ASP405 4.0 46.6 1.0
C B:ASP398 4.0 41.1 1.0
CA B:ASP398 4.2 41.1 1.0
CB B:ASP405 4.3 46.6 1.0
CB B:ASP401 4.4 47.6 1.0
CA B:ARG404 4.6 46.7 1.0
OD2 B:ASP398 4.6 41.1 1.0
N B:ARG404 4.6 46.7 1.0
CB B:ASP398 4.7 41.1 1.0
N B:LYS403 4.7 46.7 1.0
C B:ARG404 4.8 46.7 1.0
CA B:ASP405 4.8 46.6 1.0
CA B:LYS403 4.8 46.7 1.0
CE1 B:PHE430 4.8 46.4 1.0

Calcium binding site 4 out of 8 in 6whg

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Calcium binding site 4 out of 8 in the PI3P and Calcium Bound Full-Length TRPY1 in Detergent


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of PI3P and Calcium Bound Full-Length TRPY1 in Detergent within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca702

b:46.4
occ:1.00
OD2 B:ASP569 2.5 49.7 1.0
O B:ASP566 2.6 45.4 1.0
O B:THR563 2.6 41.5 1.0
OD1 B:ASP562 3.2 46.8 1.0
CG B:ASP569 3.5 49.7 1.0
OD1 A:ASN161 3.6 49.3 1.0
OD1 B:ASP569 3.7 49.7 1.0
C B:ASP566 3.7 45.4 1.0
C B:THR563 3.8 41.5 1.0
OE1 B:GLN591 3.8 59.1 1.0
NE2 B:GLN591 3.8 59.1 1.0
CA B:LEU567 4.1 49.9 1.0
CD B:GLN591 4.2 59.1 1.0
C B:LEU567 4.2 49.9 1.0
N B:THR563 4.3 41.5 1.0
C B:ASP562 4.4 46.8 1.0
N B:LEU567 4.4 49.9 1.0
O B:LEU567 4.4 49.9 1.0
CG B:ASP562 4.4 46.8 1.0
CA B:PRO564 4.5 37.5 1.0
O B:ASP562 4.5 46.8 1.0
N B:PRO564 4.6 37.5 1.0
CA B:THR563 4.7 41.5 1.0
CG A:ASN161 4.7 49.3 1.0
O B:PRO564 4.7 37.5 1.0
N B:THR568 4.8 51.7 1.0
C B:PRO564 4.8 37.5 1.0
N B:ASP569 4.8 49.7 1.0
O B:ASP569 4.9 49.7 1.0
CA B:ASP566 4.9 45.4 1.0
CB B:ASP569 4.9 49.7 1.0
CA B:ASP562 4.9 46.8 1.0
N B:ASP566 5.0 45.4 1.0

Calcium binding site 5 out of 8 in 6whg

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Calcium binding site 5 out of 8 in the PI3P and Calcium Bound Full-Length TRPY1 in Detergent


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 5 of PI3P and Calcium Bound Full-Length TRPY1 in Detergent within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Ca701

b:48.2
occ:1.00
OD2 C:ASP401 2.5 46.9 1.0
OD1 C:ASP405 2.6 46.0 1.0
O C:LYS403 2.6 45.9 1.0
OD1 C:ASP401 2.6 46.9 1.0
OD1 C:ASP398 2.9 40.8 1.0
CG C:ASP401 2.9 46.9 1.0
O C:ASP398 3.1 40.8 1.0
CG C:ASP405 3.4 46.0 1.0
C C:LYS403 3.8 45.9 1.0
CG C:ASP398 3.9 40.8 1.0
OD2 C:ASP405 3.9 46.0 1.0
N C:ASP405 4.0 46.0 1.0
C C:ASP398 4.0 40.8 1.0
CA C:ASP398 4.2 40.8 1.0
CB C:ASP405 4.3 46.0 1.0
CB C:ASP401 4.4 46.9 1.0
CA C:ARG404 4.6 45.8 1.0
OD2 C:ASP398 4.6 40.8 1.0
N C:ARG404 4.6 45.8 1.0
CB C:ASP398 4.7 40.8 1.0
N C:LYS403 4.7 45.9 1.0
C C:ARG404 4.8 45.8 1.0
CA C:ASP405 4.8 46.0 1.0
CE1 C:PHE430 4.8 46.2 1.0
CA C:LYS403 4.8 45.9 1.0

Calcium binding site 6 out of 8 in 6whg

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Calcium binding site 6 out of 8 in the PI3P and Calcium Bound Full-Length TRPY1 in Detergent


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 6 of PI3P and Calcium Bound Full-Length TRPY1 in Detergent within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Ca702

b:47.5
occ:1.00
OD2 C:ASP569 2.5 50.0 1.0
O C:ASP566 2.6 45.4 1.0
O C:THR563 2.6 42.0 1.0
OD1 C:ASP562 3.2 47.1 1.0
CG C:ASP569 3.5 50.0 1.0
OD1 B:ASN161 3.5 49.7 1.0
OD1 C:ASP569 3.7 50.0 1.0
C C:ASP566 3.7 45.4 1.0
C C:THR563 3.8 42.0 1.0
OE1 C:GLN591 3.8 59.1 1.0
NE2 C:GLN591 3.8 59.1 1.0
CA C:LEU567 4.1 49.7 1.0
CD C:GLN591 4.2 59.1 1.0
C C:LEU567 4.2 49.7 1.0
N C:THR563 4.3 42.0 1.0
C C:ASP562 4.4 47.1 1.0
N C:LEU567 4.4 49.7 1.0
O C:LEU567 4.4 49.7 1.0
CG C:ASP562 4.4 47.1 1.0
CA C:PRO564 4.5 37.9 1.0
O C:ASP562 4.5 47.1 1.0
N C:PRO564 4.6 37.9 1.0
CG B:ASN161 4.7 49.7 1.0
CA C:THR563 4.7 42.0 1.0
O C:PRO564 4.7 37.9 1.0
N C:THR568 4.8 51.4 1.0
C C:PRO564 4.8 37.9 1.0
N C:ASP569 4.8 50.0 1.0
O C:ASP569 4.9 50.0 1.0
CA C:ASP566 4.9 45.4 1.0
CB C:ASP569 4.9 50.0 1.0
CA C:ASP562 4.9 47.1 1.0
N C:ASP566 5.0 45.4 1.0

Calcium binding site 7 out of 8 in 6whg

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Calcium binding site 7 out of 8 in the PI3P and Calcium Bound Full-Length TRPY1 in Detergent


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 7 of PI3P and Calcium Bound Full-Length TRPY1 in Detergent within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Ca701

b:49.1
occ:1.00
OD2 D:ASP401 2.5 46.9 1.0
OD1 D:ASP405 2.6 46.1 1.0
O D:LYS403 2.6 46.0 1.0
OD1 D:ASP401 2.6 46.9 1.0
OD1 D:ASP398 2.9 40.7 1.0
CG D:ASP401 2.9 46.9 1.0
O D:ASP398 3.1 40.7 1.0
CG D:ASP405 3.4 46.1 1.0
C D:LYS403 3.8 46.0 1.0
CG D:ASP398 3.9 40.7 1.0
OD2 D:ASP405 3.9 46.1 1.0
N D:ASP405 4.0 46.1 1.0
C D:ASP398 4.0 40.7 1.0
CA D:ASP398 4.2 40.7 1.0
CB D:ASP405 4.3 46.1 1.0
CB D:ASP401 4.4 46.9 1.0
CA D:ARG404 4.6 46.3 1.0
OD2 D:ASP398 4.6 40.7 1.0
N D:ARG404 4.6 46.3 1.0
CB D:ASP398 4.6 40.7 1.0
N D:LYS403 4.7 46.0 1.0
C D:ARG404 4.8 46.3 1.0
CA D:ASP405 4.8 46.1 1.0
CE1 D:PHE430 4.8 45.8 1.0
CA D:LYS403 4.8 46.0 1.0

Calcium binding site 8 out of 8 in 6whg

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Calcium binding site 8 out of 8 in the PI3P and Calcium Bound Full-Length TRPY1 in Detergent


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 8 of PI3P and Calcium Bound Full-Length TRPY1 in Detergent within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Ca702

b:48.1
occ:1.00
OD2 D:ASP569 2.5 49.6 1.0
O D:ASP566 2.6 45.1 1.0
O D:THR563 2.6 41.6 1.0
OD1 D:ASP562 3.2 47.0 1.0
CG D:ASP569 3.5 49.6 1.0
OD1 C:ASN161 3.5 49.3 1.0
OD1 D:ASP569 3.7 49.6 1.0
C D:ASP566 3.7 45.1 1.0
C D:THR563 3.8 41.6 1.0
OE1 D:GLN591 3.8 58.8 1.0
NE2 D:GLN591 3.8 58.8 1.0
CA D:LEU567 4.1 49.6 1.0
CD D:GLN591 4.2 58.8 1.0
C D:LEU567 4.2 49.6 1.0
N D:THR563 4.3 41.6 1.0
C D:ASP562 4.4 47.0 1.0
N D:LEU567 4.4 49.6 1.0
O D:LEU567 4.4 49.6 1.0
CG D:ASP562 4.4 47.0 1.0
CA D:PRO564 4.5 37.3 1.0
O D:ASP562 4.5 47.0 1.0
N D:PRO564 4.6 37.3 1.0
CG C:ASN161 4.6 49.3 1.0
CA D:THR563 4.7 41.6 1.0
O D:PRO564 4.7 37.3 1.0
N D:THR568 4.8 50.7 1.0
C D:PRO564 4.8 37.3 1.0
N D:ASP569 4.8 49.6 1.0
O D:ASP569 4.9 49.6 1.0
CA D:ASP566 4.9 45.1 1.0
CB D:ASP569 4.9 49.6 1.0
CA D:ASP562 4.9 47.0 1.0
N D:ASP566 5.0 45.1 1.0

Reference:

T.Ahmed, V.Y.Moiseenkova-Bell. PI3P and Calcium Bound Full-Length TRPY1 in Detergent To Be Published.
Page generated: Tue Jul 16 17:25:03 2024

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