Calcium in PDB 6wjj: Anthrax Octamer Prechannel Bound to Full-Length Lethal Factor
Other elements in 6wjj:
The structure of Anthrax Octamer Prechannel Bound to Full-Length Lethal Factor also contains other interesting chemical elements:
Calcium Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
16;
Binding sites:
The binding sites of Calcium atom in the Anthrax Octamer Prechannel Bound to Full-Length Lethal Factor
(pdb code 6wjj). This binding sites where shown within
5.0 Angstroms radius around Calcium atom.
In total 16 binding sites of Calcium where determined in the
Anthrax Octamer Prechannel Bound to Full-Length Lethal Factor, PDB code: 6wjj:
Jump to Calcium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Calcium binding site 1 out
of 16 in 6wjj
Go back to
Calcium Binding Sites List in 6wjj
Calcium binding site 1 out
of 16 in the Anthrax Octamer Prechannel Bound to Full-Length Lethal Factor
![](/pictures/CA/pdb/wj/6wjj-CA-sphere_01.jpg) Mono view
![](/pictures/CA/pdb/wj/6wjj-CA-sphere_01_stereo.jpg) Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 1 of Anthrax Octamer Prechannel Bound to Full-Length Lethal Factor within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca801
b:10.9
occ:1.00
|
OD1
|
A:ASP179
|
2.5
|
7.1
|
1.0
|
OD2
|
A:ASP179
|
2.5
|
7.1
|
1.0
|
OD1
|
A:ASP181
|
2.5
|
6.2
|
1.0
|
OE2
|
A:GLU188
|
2.5
|
5.5
|
1.0
|
O
|
A:ILE183
|
2.6
|
7.7
|
1.0
|
OE1
|
A:GLU188
|
2.7
|
5.5
|
1.0
|
CD
|
A:GLU188
|
2.8
|
5.5
|
1.0
|
CG
|
A:ASP179
|
2.8
|
7.1
|
1.0
|
OD2
|
A:ASP181
|
3.1
|
6.2
|
1.0
|
CG
|
A:ASP181
|
3.2
|
6.2
|
1.0
|
CA
|
A:CA802
|
3.2
|
31.6
|
1.0
|
OD1
|
A:ASP177
|
3.4
|
8.9
|
1.0
|
C
|
A:ILE183
|
3.7
|
7.7
|
1.0
|
CG
|
A:GLU188
|
4.1
|
5.5
|
1.0
|
O
|
A:PRO223
|
4.1
|
5.0
|
1.0
|
OD1
|
A:ASP185
|
4.1
|
20.1
|
1.0
|
CB
|
A:ILE183
|
4.4
|
7.7
|
1.0
|
CB
|
A:ASP179
|
4.4
|
7.1
|
1.0
|
N
|
A:ILE183
|
4.4
|
7.7
|
1.0
|
CA
|
A:ILE183
|
4.4
|
7.7
|
1.0
|
O
|
A:PRO184
|
4.4
|
11.7
|
1.0
|
C
|
A:PRO184
|
4.5
|
11.7
|
1.0
|
CG
|
A:ASP177
|
4.6
|
8.9
|
1.0
|
CB
|
A:ASP181
|
4.6
|
6.2
|
1.0
|
O
|
A:SER222
|
4.7
|
4.2
|
1.0
|
C
|
A:PRO223
|
4.7
|
5.0
|
1.0
|
CA
|
A:PRO223
|
4.7
|
5.0
|
1.0
|
N
|
A:PRO184
|
4.7
|
11.7
|
1.0
|
N
|
A:ASP181
|
4.8
|
6.2
|
1.0
|
N
|
A:ASP179
|
4.8
|
7.1
|
1.0
|
CA
|
A:PRO184
|
4.9
|
11.7
|
1.0
|
CB
|
A:GLU188
|
4.9
|
5.5
|
1.0
|
|
Calcium binding site 2 out
of 16 in 6wjj
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Calcium Binding Sites List in 6wjj
Calcium binding site 2 out
of 16 in the Anthrax Octamer Prechannel Bound to Full-Length Lethal Factor
![](/pictures/CA/pdb/wj/6wjj-CA-sphere_02.jpg) Mono view
![](/pictures/CA/pdb/wj/6wjj-CA-sphere_02_stereo.jpg) Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 2 of Anthrax Octamer Prechannel Bound to Full-Length Lethal Factor within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca802
b:31.6
occ:1.00
|
OD2
|
A:ASP181
|
2.5
|
6.2
|
1.0
|
OD2
|
A:ASP235
|
2.5
|
2.1
|
1.0
|
O
|
A:SER222
|
2.5
|
4.2
|
1.0
|
OD2
|
A:ASP179
|
2.5
|
7.1
|
1.0
|
OE2
|
A:GLU188
|
2.5
|
5.5
|
1.0
|
OE1
|
A:GLU188
|
2.6
|
5.5
|
1.0
|
CD
|
A:GLU188
|
2.8
|
5.5
|
1.0
|
O
|
A:LYS225
|
3.2
|
3.7
|
1.0
|
CA
|
A:CA801
|
3.2
|
10.9
|
1.0
|
CG
|
A:ASP181
|
3.6
|
6.2
|
1.0
|
CG
|
A:ASP235
|
3.7
|
2.1
|
1.0
|
C
|
A:SER222
|
3.7
|
4.2
|
1.0
|
CG
|
A:ASP179
|
3.7
|
7.1
|
1.0
|
OG
|
A:SER221
|
3.8
|
3.3
|
1.0
|
OD1
|
A:ASP181
|
4.1
|
6.2
|
1.0
|
CG
|
A:GLU188
|
4.2
|
5.5
|
1.0
|
CB
|
A:ASP235
|
4.3
|
2.1
|
1.0
|
C
|
A:LYS225
|
4.4
|
3.7
|
1.0
|
N
|
A:SER222
|
4.4
|
4.2
|
1.0
|
CA
|
A:PRO223
|
4.4
|
5.0
|
1.0
|
OD1
|
A:ASP179
|
4.4
|
7.1
|
1.0
|
C
|
A:PRO223
|
4.5
|
5.0
|
1.0
|
N
|
A:PRO223
|
4.5
|
5.0
|
1.0
|
CA
|
A:SER222
|
4.6
|
4.2
|
1.0
|
CB
|
A:SER221
|
4.6
|
3.3
|
1.0
|
O
|
A:PRO223
|
4.7
|
5.0
|
1.0
|
OD1
|
A:ASP235
|
4.7
|
2.1
|
1.0
|
CB
|
A:ASP181
|
4.7
|
6.2
|
1.0
|
N
|
A:LYS225
|
4.7
|
3.7
|
1.0
|
CB
|
A:ASP179
|
4.8
|
7.1
|
1.0
|
CB
|
A:GLU188
|
4.9
|
5.5
|
1.0
|
OG1
|
A:THR228
|
4.9
|
4.0
|
1.0
|
N
|
A:GLU224
|
4.9
|
7.5
|
1.0
|
|
Calcium binding site 3 out
of 16 in 6wjj
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Calcium Binding Sites List in 6wjj
Calcium binding site 3 out
of 16 in the Anthrax Octamer Prechannel Bound to Full-Length Lethal Factor
![](/pictures/CA/pdb/wj/6wjj-CA-sphere_03.jpg) Mono view
![](/pictures/CA/pdb/wj/6wjj-CA-sphere_03_stereo.jpg) Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 3 of Anthrax Octamer Prechannel Bound to Full-Length Lethal Factor within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ca801
b:31.6
occ:1.00
|
OD2
|
B:ASP179
|
2.5
|
10.6
|
1.0
|
OD1
|
B:ASP179
|
2.5
|
10.6
|
1.0
|
OE2
|
B:GLU188
|
2.5
|
7.4
|
1.0
|
O
|
B:ILE183
|
2.5
|
11.5
|
1.0
|
OD1
|
B:ASP181
|
2.6
|
15.0
|
1.0
|
CG
|
B:ASP179
|
2.8
|
10.6
|
1.0
|
CD
|
B:GLU188
|
2.9
|
7.4
|
1.0
|
OE1
|
B:GLU188
|
3.1
|
7.4
|
1.0
|
OD2
|
B:ASP181
|
3.2
|
15.0
|
1.0
|
CG
|
B:ASP181
|
3.2
|
15.0
|
1.0
|
OD1
|
B:ASP177
|
3.5
|
12.1
|
1.0
|
CA
|
B:CA802
|
3.5
|
31.6
|
1.0
|
C
|
B:ILE183
|
3.6
|
11.5
|
1.0
|
CG
|
B:GLU188
|
4.1
|
7.4
|
1.0
|
OD1
|
B:ASP185
|
4.2
|
13.5
|
1.0
|
N
|
B:ILE183
|
4.2
|
11.5
|
1.0
|
O
|
B:PRO184
|
4.2
|
10.5
|
1.0
|
CB
|
B:ILE183
|
4.2
|
11.5
|
1.0
|
CA
|
B:ILE183
|
4.3
|
11.5
|
1.0
|
O
|
B:PRO223
|
4.3
|
5.3
|
1.0
|
CB
|
B:ASP179
|
4.3
|
10.6
|
1.0
|
C
|
B:PRO184
|
4.5
|
10.5
|
1.0
|
CG
|
B:ASP177
|
4.6
|
12.1
|
1.0
|
CA
|
B:PRO223
|
4.6
|
5.3
|
1.0
|
N
|
B:PRO184
|
4.7
|
10.5
|
1.0
|
CB
|
B:ASP181
|
4.7
|
15.0
|
1.0
|
C
|
B:PRO223
|
4.8
|
5.3
|
1.0
|
O
|
B:SER222
|
4.9
|
6.0
|
1.0
|
N
|
B:ASP179
|
4.9
|
10.6
|
1.0
|
CA
|
B:PRO184
|
4.9
|
10.5
|
1.0
|
N
|
B:ASP181
|
4.9
|
15.0
|
1.0
|
N
|
B:GLY182
|
5.0
|
35.6
|
1.0
|
CB
|
B:GLU188
|
5.0
|
7.4
|
1.0
|
|
Calcium binding site 4 out
of 16 in 6wjj
Go back to
Calcium Binding Sites List in 6wjj
Calcium binding site 4 out
of 16 in the Anthrax Octamer Prechannel Bound to Full-Length Lethal Factor
![](/pictures/CA/pdb/wj/6wjj-CA-sphere_04.jpg) Mono view
![](/pictures/CA/pdb/wj/6wjj-CA-sphere_04_stereo.jpg) Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 4 of Anthrax Octamer Prechannel Bound to Full-Length Lethal Factor within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ca802
b:31.6
occ:1.00
|
OD2
|
B:ASP181
|
2.5
|
15.0
|
1.0
|
OD2
|
B:ASP235
|
2.5
|
3.3
|
1.0
|
OE1
|
B:GLU188
|
2.5
|
7.4
|
1.0
|
OD2
|
B:ASP179
|
2.5
|
10.6
|
1.0
|
O
|
B:SER222
|
2.6
|
6.0
|
1.0
|
OE2
|
B:GLU188
|
2.7
|
7.4
|
1.0
|
CD
|
B:GLU188
|
2.9
|
7.4
|
1.0
|
O
|
B:LYS225
|
3.2
|
4.4
|
1.0
|
CA
|
B:CA801
|
3.5
|
31.6
|
1.0
|
CG
|
B:ASP181
|
3.6
|
15.0
|
1.0
|
CG
|
B:ASP235
|
3.6
|
3.3
|
1.0
|
OG
|
B:SER221
|
3.7
|
4.0
|
1.0
|
C
|
B:SER222
|
3.7
|
6.0
|
1.0
|
CG
|
B:ASP179
|
3.8
|
10.6
|
1.0
|
CB
|
B:ASP235
|
4.1
|
3.3
|
1.0
|
OD1
|
B:ASP181
|
4.2
|
15.0
|
1.0
|
N
|
B:SER222
|
4.3
|
6.0
|
1.0
|
CG
|
B:GLU188
|
4.3
|
7.4
|
1.0
|
CB
|
B:SER221
|
4.4
|
4.0
|
1.0
|
C
|
B:LYS225
|
4.5
|
4.4
|
1.0
|
CA
|
B:PRO223
|
4.5
|
5.3
|
1.0
|
N
|
B:PRO223
|
4.6
|
5.3
|
1.0
|
OD1
|
B:ASP179
|
4.6
|
10.6
|
1.0
|
CA
|
B:SER222
|
4.6
|
6.0
|
1.0
|
CB
|
B:ASP181
|
4.6
|
15.0
|
1.0
|
OG1
|
B:THR228
|
4.7
|
3.6
|
1.0
|
CB
|
B:ASP179
|
4.7
|
10.6
|
1.0
|
OD1
|
B:ASP235
|
4.7
|
3.3
|
1.0
|
C
|
B:PRO223
|
4.7
|
5.3
|
1.0
|
N
|
B:LYS225
|
4.9
|
4.4
|
1.0
|
CB
|
B:GLU188
|
5.0
|
7.4
|
1.0
|
|
Calcium binding site 5 out
of 16 in 6wjj
Go back to
Calcium Binding Sites List in 6wjj
Calcium binding site 5 out
of 16 in the Anthrax Octamer Prechannel Bound to Full-Length Lethal Factor
![](/pictures/CA/pdb/wj/6wjj-CA-sphere_05.jpg) Mono view
![](/pictures/CA/pdb/wj/6wjj-CA-sphere_05_stereo.jpg) Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 5 of Anthrax Octamer Prechannel Bound to Full-Length Lethal Factor within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Ca801
b:10.9
occ:1.00
|
OD1
|
C:ASP179
|
2.5
|
7.1
|
1.0
|
OD2
|
C:ASP179
|
2.5
|
7.1
|
1.0
|
OD1
|
C:ASP181
|
2.5
|
6.2
|
1.0
|
OE2
|
C:GLU188
|
2.5
|
5.5
|
1.0
|
O
|
C:ILE183
|
2.6
|
7.7
|
1.0
|
OE1
|
C:GLU188
|
2.7
|
5.5
|
1.0
|
CD
|
C:GLU188
|
2.8
|
5.5
|
1.0
|
CG
|
C:ASP179
|
2.8
|
7.1
|
1.0
|
OD2
|
C:ASP181
|
3.1
|
6.2
|
1.0
|
CG
|
C:ASP181
|
3.2
|
6.2
|
1.0
|
CA
|
C:CA802
|
3.2
|
31.6
|
1.0
|
OD1
|
C:ASP177
|
3.4
|
8.9
|
1.0
|
C
|
C:ILE183
|
3.7
|
7.7
|
1.0
|
CG
|
C:GLU188
|
4.1
|
5.5
|
1.0
|
O
|
C:PRO223
|
4.1
|
5.0
|
1.0
|
OD1
|
C:ASP185
|
4.1
|
20.1
|
1.0
|
CB
|
C:ILE183
|
4.4
|
7.7
|
1.0
|
CB
|
C:ASP179
|
4.4
|
7.1
|
1.0
|
N
|
C:ILE183
|
4.4
|
7.7
|
1.0
|
CA
|
C:ILE183
|
4.4
|
7.7
|
1.0
|
O
|
C:PRO184
|
4.4
|
11.7
|
1.0
|
C
|
C:PRO184
|
4.5
|
11.7
|
1.0
|
CG
|
C:ASP177
|
4.6
|
8.9
|
1.0
|
CB
|
C:ASP181
|
4.6
|
6.2
|
1.0
|
O
|
C:SER222
|
4.7
|
4.2
|
1.0
|
C
|
C:PRO223
|
4.7
|
5.0
|
1.0
|
CA
|
C:PRO223
|
4.7
|
5.0
|
1.0
|
N
|
C:PRO184
|
4.7
|
11.7
|
1.0
|
N
|
C:ASP181
|
4.8
|
6.2
|
1.0
|
N
|
C:ASP179
|
4.8
|
7.1
|
1.0
|
CA
|
C:PRO184
|
4.9
|
11.7
|
1.0
|
CB
|
C:GLU188
|
4.9
|
5.5
|
1.0
|
|
Calcium binding site 6 out
of 16 in 6wjj
Go back to
Calcium Binding Sites List in 6wjj
Calcium binding site 6 out
of 16 in the Anthrax Octamer Prechannel Bound to Full-Length Lethal Factor
![](/pictures/CA/pdb/wj/6wjj-CA-sphere_06.jpg) Mono view
![](/pictures/CA/pdb/wj/6wjj-CA-sphere_06_stereo.jpg) Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 6 of Anthrax Octamer Prechannel Bound to Full-Length Lethal Factor within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Ca802
b:31.6
occ:1.00
|
OD2
|
C:ASP181
|
2.5
|
6.2
|
1.0
|
OD2
|
C:ASP235
|
2.5
|
2.1
|
1.0
|
O
|
C:SER222
|
2.5
|
4.2
|
1.0
|
OD2
|
C:ASP179
|
2.5
|
7.1
|
1.0
|
OE2
|
C:GLU188
|
2.5
|
5.5
|
1.0
|
OE1
|
C:GLU188
|
2.6
|
5.5
|
1.0
|
CD
|
C:GLU188
|
2.8
|
5.5
|
1.0
|
O
|
C:LYS225
|
3.2
|
3.7
|
1.0
|
CA
|
C:CA801
|
3.2
|
10.9
|
1.0
|
CG
|
C:ASP181
|
3.6
|
6.2
|
1.0
|
CG
|
C:ASP235
|
3.7
|
2.1
|
1.0
|
C
|
C:SER222
|
3.7
|
4.2
|
1.0
|
CG
|
C:ASP179
|
3.7
|
7.1
|
1.0
|
OG
|
C:SER221
|
3.8
|
3.3
|
1.0
|
OD1
|
C:ASP181
|
4.1
|
6.2
|
1.0
|
CG
|
C:GLU188
|
4.2
|
5.5
|
1.0
|
CB
|
C:ASP235
|
4.3
|
2.1
|
1.0
|
C
|
C:LYS225
|
4.4
|
3.7
|
1.0
|
N
|
C:SER222
|
4.4
|
4.2
|
1.0
|
CA
|
C:PRO223
|
4.4
|
5.0
|
1.0
|
OD1
|
C:ASP179
|
4.4
|
7.1
|
1.0
|
C
|
C:PRO223
|
4.5
|
5.0
|
1.0
|
N
|
C:PRO223
|
4.5
|
5.0
|
1.0
|
CA
|
C:SER222
|
4.6
|
4.2
|
1.0
|
CB
|
C:SER221
|
4.6
|
3.3
|
1.0
|
O
|
C:PRO223
|
4.7
|
5.0
|
1.0
|
OD1
|
C:ASP235
|
4.7
|
2.1
|
1.0
|
CB
|
C:ASP181
|
4.7
|
6.2
|
1.0
|
N
|
C:LYS225
|
4.7
|
3.7
|
1.0
|
CB
|
C:ASP179
|
4.8
|
7.1
|
1.0
|
CB
|
C:GLU188
|
4.9
|
5.5
|
1.0
|
OG1
|
C:THR228
|
4.9
|
4.0
|
1.0
|
N
|
C:GLU224
|
4.9
|
7.5
|
1.0
|
|
Calcium binding site 7 out
of 16 in 6wjj
Go back to
Calcium Binding Sites List in 6wjj
Calcium binding site 7 out
of 16 in the Anthrax Octamer Prechannel Bound to Full-Length Lethal Factor
![](/pictures/CA/pdb/wj/6wjj-CA-sphere_07.jpg) Mono view
![](/pictures/CA/pdb/wj/6wjj-CA-sphere_07_stereo.jpg) Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 7 of Anthrax Octamer Prechannel Bound to Full-Length Lethal Factor within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
F:Ca801
b:31.6
occ:1.00
|
OD2
|
F:ASP179
|
2.5
|
10.6
|
1.0
|
OD1
|
F:ASP179
|
2.5
|
10.6
|
1.0
|
OE2
|
F:GLU188
|
2.5
|
7.4
|
1.0
|
O
|
F:ILE183
|
2.5
|
11.5
|
1.0
|
OD1
|
F:ASP181
|
2.6
|
15.0
|
1.0
|
CG
|
F:ASP179
|
2.8
|
10.6
|
1.0
|
CD
|
F:GLU188
|
2.9
|
7.4
|
1.0
|
OE1
|
F:GLU188
|
3.1
|
7.4
|
1.0
|
OD2
|
F:ASP181
|
3.2
|
15.0
|
1.0
|
CG
|
F:ASP181
|
3.2
|
15.0
|
1.0
|
OD1
|
F:ASP177
|
3.5
|
12.1
|
1.0
|
CA
|
F:CA802
|
3.5
|
31.6
|
1.0
|
C
|
F:ILE183
|
3.6
|
11.5
|
1.0
|
CG
|
F:GLU188
|
4.1
|
7.4
|
1.0
|
OD1
|
F:ASP185
|
4.2
|
13.5
|
1.0
|
N
|
F:ILE183
|
4.2
|
11.5
|
1.0
|
O
|
F:PRO184
|
4.2
|
10.5
|
1.0
|
CB
|
F:ILE183
|
4.2
|
11.5
|
1.0
|
CA
|
F:ILE183
|
4.3
|
11.5
|
1.0
|
O
|
F:PRO223
|
4.3
|
5.3
|
1.0
|
CB
|
F:ASP179
|
4.3
|
10.6
|
1.0
|
C
|
F:PRO184
|
4.5
|
10.5
|
1.0
|
CG
|
F:ASP177
|
4.6
|
12.1
|
1.0
|
CA
|
F:PRO223
|
4.6
|
5.3
|
1.0
|
N
|
F:PRO184
|
4.7
|
10.5
|
1.0
|
CB
|
F:ASP181
|
4.7
|
15.0
|
1.0
|
C
|
F:PRO223
|
4.8
|
5.3
|
1.0
|
O
|
F:SER222
|
4.9
|
6.0
|
1.0
|
N
|
F:ASP179
|
4.9
|
10.6
|
1.0
|
CA
|
F:PRO184
|
4.9
|
10.5
|
1.0
|
N
|
F:ASP181
|
4.9
|
15.0
|
1.0
|
N
|
F:GLY182
|
5.0
|
35.6
|
1.0
|
CB
|
F:GLU188
|
5.0
|
7.4
|
1.0
|
|
Calcium binding site 8 out
of 16 in 6wjj
Go back to
Calcium Binding Sites List in 6wjj
Calcium binding site 8 out
of 16 in the Anthrax Octamer Prechannel Bound to Full-Length Lethal Factor
![](/pictures/CA/pdb/wj/6wjj-CA-sphere_08.jpg) Mono view
![](/pictures/CA/pdb/wj/6wjj-CA-sphere_08_stereo.jpg) Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 8 of Anthrax Octamer Prechannel Bound to Full-Length Lethal Factor within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
F:Ca802
b:31.6
occ:1.00
|
OD2
|
F:ASP181
|
2.5
|
15.0
|
1.0
|
OD2
|
F:ASP235
|
2.5
|
3.3
|
1.0
|
OE1
|
F:GLU188
|
2.5
|
7.4
|
1.0
|
OD2
|
F:ASP179
|
2.5
|
10.6
|
1.0
|
O
|
F:SER222
|
2.6
|
6.0
|
1.0
|
OE2
|
F:GLU188
|
2.7
|
7.4
|
1.0
|
CD
|
F:GLU188
|
2.9
|
7.4
|
1.0
|
O
|
F:LYS225
|
3.2
|
4.4
|
1.0
|
CA
|
F:CA801
|
3.5
|
31.6
|
1.0
|
CG
|
F:ASP181
|
3.6
|
15.0
|
1.0
|
CG
|
F:ASP235
|
3.6
|
3.3
|
1.0
|
OG
|
F:SER221
|
3.7
|
4.0
|
1.0
|
C
|
F:SER222
|
3.7
|
6.0
|
1.0
|
CG
|
F:ASP179
|
3.8
|
10.6
|
1.0
|
CB
|
F:ASP235
|
4.1
|
3.3
|
1.0
|
OD1
|
F:ASP181
|
4.2
|
15.0
|
1.0
|
N
|
F:SER222
|
4.3
|
6.0
|
1.0
|
CG
|
F:GLU188
|
4.3
|
7.4
|
1.0
|
CB
|
F:SER221
|
4.4
|
4.0
|
1.0
|
C
|
F:LYS225
|
4.5
|
4.4
|
1.0
|
CA
|
F:PRO223
|
4.5
|
5.3
|
1.0
|
N
|
F:PRO223
|
4.6
|
5.3
|
1.0
|
OD1
|
F:ASP179
|
4.6
|
10.6
|
1.0
|
CA
|
F:SER222
|
4.6
|
6.0
|
1.0
|
CB
|
F:ASP181
|
4.6
|
15.0
|
1.0
|
OG1
|
F:THR228
|
4.7
|
3.6
|
1.0
|
CB
|
F:ASP179
|
4.7
|
10.6
|
1.0
|
OD1
|
F:ASP235
|
4.7
|
3.3
|
1.0
|
C
|
F:PRO223
|
4.7
|
5.3
|
1.0
|
N
|
F:LYS225
|
4.9
|
4.4
|
1.0
|
CB
|
F:GLU188
|
5.0
|
7.4
|
1.0
|
|
Calcium binding site 9 out
of 16 in 6wjj
Go back to
Calcium Binding Sites List in 6wjj
Calcium binding site 9 out
of 16 in the Anthrax Octamer Prechannel Bound to Full-Length Lethal Factor
![](/pictures/CA/pdb/wj/6wjj-CA-sphere_09.jpg) Mono view
![](/pictures/CA/pdb/wj/6wjj-CA-sphere_09_stereo.jpg) Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 9 of Anthrax Octamer Prechannel Bound to Full-Length Lethal Factor within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Ca801
b:10.9
occ:1.00
|
OD1
|
D:ASP179
|
2.5
|
7.1
|
1.0
|
OD2
|
D:ASP179
|
2.5
|
7.1
|
1.0
|
OD1
|
D:ASP181
|
2.5
|
6.2
|
1.0
|
OE2
|
D:GLU188
|
2.5
|
5.5
|
1.0
|
O
|
D:ILE183
|
2.6
|
7.7
|
1.0
|
OE1
|
D:GLU188
|
2.7
|
5.5
|
1.0
|
CD
|
D:GLU188
|
2.8
|
5.5
|
1.0
|
CG
|
D:ASP179
|
2.8
|
7.1
|
1.0
|
OD2
|
D:ASP181
|
3.1
|
6.2
|
1.0
|
CG
|
D:ASP181
|
3.2
|
6.2
|
1.0
|
CA
|
D:CA802
|
3.2
|
31.6
|
1.0
|
OD1
|
D:ASP177
|
3.4
|
8.9
|
1.0
|
C
|
D:ILE183
|
3.7
|
7.7
|
1.0
|
CG
|
D:GLU188
|
4.1
|
5.5
|
1.0
|
O
|
D:PRO223
|
4.1
|
5.0
|
1.0
|
OD1
|
D:ASP185
|
4.1
|
20.1
|
1.0
|
CB
|
D:ILE183
|
4.4
|
7.7
|
1.0
|
CB
|
D:ASP179
|
4.4
|
7.1
|
1.0
|
N
|
D:ILE183
|
4.4
|
7.7
|
1.0
|
CA
|
D:ILE183
|
4.4
|
7.7
|
1.0
|
O
|
D:PRO184
|
4.4
|
11.7
|
1.0
|
C
|
D:PRO184
|
4.5
|
11.7
|
1.0
|
CG
|
D:ASP177
|
4.6
|
8.9
|
1.0
|
CB
|
D:ASP181
|
4.6
|
6.2
|
1.0
|
O
|
D:SER222
|
4.7
|
4.2
|
1.0
|
C
|
D:PRO223
|
4.7
|
5.0
|
1.0
|
CA
|
D:PRO223
|
4.7
|
5.0
|
1.0
|
N
|
D:PRO184
|
4.7
|
11.7
|
1.0
|
N
|
D:ASP181
|
4.8
|
6.2
|
1.0
|
N
|
D:ASP179
|
4.8
|
7.1
|
1.0
|
CA
|
D:PRO184
|
4.9
|
11.7
|
1.0
|
CB
|
D:GLU188
|
4.9
|
5.5
|
1.0
|
|
Calcium binding site 10 out
of 16 in 6wjj
Go back to
Calcium Binding Sites List in 6wjj
Calcium binding site 10 out
of 16 in the Anthrax Octamer Prechannel Bound to Full-Length Lethal Factor
![](/pictures/CA/pdb/wj/6wjj-CA-sphere_10.jpg) Mono view
![](/pictures/CA/pdb/wj/6wjj-CA-sphere_10_stereo.jpg) Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 10 of Anthrax Octamer Prechannel Bound to Full-Length Lethal Factor within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Ca802
b:31.6
occ:1.00
|
OD2
|
D:ASP181
|
2.5
|
6.2
|
1.0
|
OD2
|
D:ASP235
|
2.5
|
2.1
|
1.0
|
O
|
D:SER222
|
2.5
|
4.2
|
1.0
|
OD2
|
D:ASP179
|
2.5
|
7.1
|
1.0
|
OE2
|
D:GLU188
|
2.5
|
5.5
|
1.0
|
OE1
|
D:GLU188
|
2.6
|
5.5
|
1.0
|
CD
|
D:GLU188
|
2.8
|
5.5
|
1.0
|
O
|
D:LYS225
|
3.2
|
3.7
|
1.0
|
CA
|
D:CA801
|
3.2
|
10.9
|
1.0
|
CG
|
D:ASP181
|
3.6
|
6.2
|
1.0
|
CG
|
D:ASP235
|
3.7
|
2.1
|
1.0
|
C
|
D:SER222
|
3.7
|
4.2
|
1.0
|
CG
|
D:ASP179
|
3.7
|
7.1
|
1.0
|
OG
|
D:SER221
|
3.8
|
3.3
|
1.0
|
OD1
|
D:ASP181
|
4.1
|
6.2
|
1.0
|
CG
|
D:GLU188
|
4.2
|
5.5
|
1.0
|
CB
|
D:ASP235
|
4.3
|
2.1
|
1.0
|
C
|
D:LYS225
|
4.4
|
3.7
|
1.0
|
N
|
D:SER222
|
4.4
|
4.2
|
1.0
|
CA
|
D:PRO223
|
4.4
|
5.0
|
1.0
|
OD1
|
D:ASP179
|
4.4
|
7.1
|
1.0
|
C
|
D:PRO223
|
4.5
|
5.0
|
1.0
|
N
|
D:PRO223
|
4.5
|
5.0
|
1.0
|
CA
|
D:SER222
|
4.6
|
4.2
|
1.0
|
CB
|
D:SER221
|
4.6
|
3.3
|
1.0
|
O
|
D:PRO223
|
4.7
|
5.0
|
1.0
|
OD1
|
D:ASP235
|
4.7
|
2.1
|
1.0
|
CB
|
D:ASP181
|
4.7
|
6.2
|
1.0
|
N
|
D:LYS225
|
4.7
|
3.7
|
1.0
|
CB
|
D:ASP179
|
4.8
|
7.1
|
1.0
|
CB
|
D:GLU188
|
4.9
|
5.5
|
1.0
|
OG1
|
D:THR228
|
4.9
|
4.0
|
1.0
|
N
|
D:GLU224
|
4.9
|
7.5
|
1.0
|
|
Reference:
K.Zhou,
S.Liu,
N.J.Hardenbrook,
Y.Cui,
B.A.Krantz,
Z.H.Zhou.
Atomic Structures of Anthrax Prechannel Bound with Full-Length Lethal and Edema Factors. Structure V. 28 879 2020.
ISSN: ISSN 0969-2126
PubMed: 32521227
DOI: 10.1016/J.STR.2020.05.009
Page generated: Tue Jul 16 17:25:49 2024
|