Calcium in PDB 6wjj: Anthrax Octamer Prechannel Bound to Full-Length Lethal Factor

Other elements in 6wjj:

The structure of Anthrax Octamer Prechannel Bound to Full-Length Lethal Factor also contains other interesting chemical elements:

Zinc (Zn) 4 atoms

Calcium Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 16;

Binding sites:

The binding sites of Calcium atom in the Anthrax Octamer Prechannel Bound to Full-Length Lethal Factor (pdb code 6wjj). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 16 binding sites of Calcium where determined in the Anthrax Octamer Prechannel Bound to Full-Length Lethal Factor, PDB code: 6wjj:
Jump to Calcium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Calcium binding site 1 out of 16 in 6wjj

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Calcium binding site 1 out of 16 in the Anthrax Octamer Prechannel Bound to Full-Length Lethal Factor


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Anthrax Octamer Prechannel Bound to Full-Length Lethal Factor within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca801

b:10.9
occ:1.00
OD1 A:ASP179 2.5 7.1 1.0
OD2 A:ASP179 2.5 7.1 1.0
OD1 A:ASP181 2.5 6.2 1.0
OE2 A:GLU188 2.5 5.5 1.0
O A:ILE183 2.6 7.7 1.0
OE1 A:GLU188 2.7 5.5 1.0
CD A:GLU188 2.8 5.5 1.0
CG A:ASP179 2.8 7.1 1.0
OD2 A:ASP181 3.1 6.2 1.0
CG A:ASP181 3.2 6.2 1.0
CA A:CA802 3.2 31.6 1.0
OD1 A:ASP177 3.4 8.9 1.0
C A:ILE183 3.7 7.7 1.0
CG A:GLU188 4.1 5.5 1.0
O A:PRO223 4.1 5.0 1.0
OD1 A:ASP185 4.1 20.1 1.0
CB A:ILE183 4.4 7.7 1.0
CB A:ASP179 4.4 7.1 1.0
N A:ILE183 4.4 7.7 1.0
CA A:ILE183 4.4 7.7 1.0
O A:PRO184 4.4 11.7 1.0
C A:PRO184 4.5 11.7 1.0
CG A:ASP177 4.6 8.9 1.0
CB A:ASP181 4.6 6.2 1.0
O A:SER222 4.7 4.2 1.0
C A:PRO223 4.7 5.0 1.0
CA A:PRO223 4.7 5.0 1.0
N A:PRO184 4.7 11.7 1.0
N A:ASP181 4.8 6.2 1.0
N A:ASP179 4.8 7.1 1.0
CA A:PRO184 4.9 11.7 1.0
CB A:GLU188 4.9 5.5 1.0

Calcium binding site 2 out of 16 in 6wjj

Go back to Calcium Binding Sites List in 6wjj
Calcium binding site 2 out of 16 in the Anthrax Octamer Prechannel Bound to Full-Length Lethal Factor


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Anthrax Octamer Prechannel Bound to Full-Length Lethal Factor within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca802

b:31.6
occ:1.00
OD2 A:ASP181 2.5 6.2 1.0
OD2 A:ASP235 2.5 2.1 1.0
O A:SER222 2.5 4.2 1.0
OD2 A:ASP179 2.5 7.1 1.0
OE2 A:GLU188 2.5 5.5 1.0
OE1 A:GLU188 2.6 5.5 1.0
CD A:GLU188 2.8 5.5 1.0
O A:LYS225 3.2 3.7 1.0
CA A:CA801 3.2 10.9 1.0
CG A:ASP181 3.6 6.2 1.0
CG A:ASP235 3.7 2.1 1.0
C A:SER222 3.7 4.2 1.0
CG A:ASP179 3.7 7.1 1.0
OG A:SER221 3.8 3.3 1.0
OD1 A:ASP181 4.1 6.2 1.0
CG A:GLU188 4.2 5.5 1.0
CB A:ASP235 4.3 2.1 1.0
C A:LYS225 4.4 3.7 1.0
N A:SER222 4.4 4.2 1.0
CA A:PRO223 4.4 5.0 1.0
OD1 A:ASP179 4.4 7.1 1.0
C A:PRO223 4.5 5.0 1.0
N A:PRO223 4.5 5.0 1.0
CA A:SER222 4.6 4.2 1.0
CB A:SER221 4.6 3.3 1.0
O A:PRO223 4.7 5.0 1.0
OD1 A:ASP235 4.7 2.1 1.0
CB A:ASP181 4.7 6.2 1.0
N A:LYS225 4.7 3.7 1.0
CB A:ASP179 4.8 7.1 1.0
CB A:GLU188 4.9 5.5 1.0
OG1 A:THR228 4.9 4.0 1.0
N A:GLU224 4.9 7.5 1.0

Calcium binding site 3 out of 16 in 6wjj

Go back to Calcium Binding Sites List in 6wjj
Calcium binding site 3 out of 16 in the Anthrax Octamer Prechannel Bound to Full-Length Lethal Factor


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Anthrax Octamer Prechannel Bound to Full-Length Lethal Factor within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca801

b:31.6
occ:1.00
OD2 B:ASP179 2.5 10.6 1.0
OD1 B:ASP179 2.5 10.6 1.0
OE2 B:GLU188 2.5 7.4 1.0
O B:ILE183 2.5 11.5 1.0
OD1 B:ASP181 2.6 15.0 1.0
CG B:ASP179 2.8 10.6 1.0
CD B:GLU188 2.9 7.4 1.0
OE1 B:GLU188 3.1 7.4 1.0
OD2 B:ASP181 3.2 15.0 1.0
CG B:ASP181 3.2 15.0 1.0
OD1 B:ASP177 3.5 12.1 1.0
CA B:CA802 3.5 31.6 1.0
C B:ILE183 3.6 11.5 1.0
CG B:GLU188 4.1 7.4 1.0
OD1 B:ASP185 4.2 13.5 1.0
N B:ILE183 4.2 11.5 1.0
O B:PRO184 4.2 10.5 1.0
CB B:ILE183 4.2 11.5 1.0
CA B:ILE183 4.3 11.5 1.0
O B:PRO223 4.3 5.3 1.0
CB B:ASP179 4.3 10.6 1.0
C B:PRO184 4.5 10.5 1.0
CG B:ASP177 4.6 12.1 1.0
CA B:PRO223 4.6 5.3 1.0
N B:PRO184 4.7 10.5 1.0
CB B:ASP181 4.7 15.0 1.0
C B:PRO223 4.8 5.3 1.0
O B:SER222 4.9 6.0 1.0
N B:ASP179 4.9 10.6 1.0
CA B:PRO184 4.9 10.5 1.0
N B:ASP181 4.9 15.0 1.0
N B:GLY182 5.0 35.6 1.0
CB B:GLU188 5.0 7.4 1.0

Calcium binding site 4 out of 16 in 6wjj

Go back to Calcium Binding Sites List in 6wjj
Calcium binding site 4 out of 16 in the Anthrax Octamer Prechannel Bound to Full-Length Lethal Factor


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of Anthrax Octamer Prechannel Bound to Full-Length Lethal Factor within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca802

b:31.6
occ:1.00
OD2 B:ASP181 2.5 15.0 1.0
OD2 B:ASP235 2.5 3.3 1.0
OE1 B:GLU188 2.5 7.4 1.0
OD2 B:ASP179 2.5 10.6 1.0
O B:SER222 2.6 6.0 1.0
OE2 B:GLU188 2.7 7.4 1.0
CD B:GLU188 2.9 7.4 1.0
O B:LYS225 3.2 4.4 1.0
CA B:CA801 3.5 31.6 1.0
CG B:ASP181 3.6 15.0 1.0
CG B:ASP235 3.6 3.3 1.0
OG B:SER221 3.7 4.0 1.0
C B:SER222 3.7 6.0 1.0
CG B:ASP179 3.8 10.6 1.0
CB B:ASP235 4.1 3.3 1.0
OD1 B:ASP181 4.2 15.0 1.0
N B:SER222 4.3 6.0 1.0
CG B:GLU188 4.3 7.4 1.0
CB B:SER221 4.4 4.0 1.0
C B:LYS225 4.5 4.4 1.0
CA B:PRO223 4.5 5.3 1.0
N B:PRO223 4.6 5.3 1.0
OD1 B:ASP179 4.6 10.6 1.0
CA B:SER222 4.6 6.0 1.0
CB B:ASP181 4.6 15.0 1.0
OG1 B:THR228 4.7 3.6 1.0
CB B:ASP179 4.7 10.6 1.0
OD1 B:ASP235 4.7 3.3 1.0
C B:PRO223 4.7 5.3 1.0
N B:LYS225 4.9 4.4 1.0
CB B:GLU188 5.0 7.4 1.0

Calcium binding site 5 out of 16 in 6wjj

Go back to Calcium Binding Sites List in 6wjj
Calcium binding site 5 out of 16 in the Anthrax Octamer Prechannel Bound to Full-Length Lethal Factor


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 5 of Anthrax Octamer Prechannel Bound to Full-Length Lethal Factor within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Ca801

b:10.9
occ:1.00
OD1 C:ASP179 2.5 7.1 1.0
OD2 C:ASP179 2.5 7.1 1.0
OD1 C:ASP181 2.5 6.2 1.0
OE2 C:GLU188 2.5 5.5 1.0
O C:ILE183 2.6 7.7 1.0
OE1 C:GLU188 2.7 5.5 1.0
CD C:GLU188 2.8 5.5 1.0
CG C:ASP179 2.8 7.1 1.0
OD2 C:ASP181 3.1 6.2 1.0
CG C:ASP181 3.2 6.2 1.0
CA C:CA802 3.2 31.6 1.0
OD1 C:ASP177 3.4 8.9 1.0
C C:ILE183 3.7 7.7 1.0
CG C:GLU188 4.1 5.5 1.0
O C:PRO223 4.1 5.0 1.0
OD1 C:ASP185 4.1 20.1 1.0
CB C:ILE183 4.4 7.7 1.0
CB C:ASP179 4.4 7.1 1.0
N C:ILE183 4.4 7.7 1.0
CA C:ILE183 4.4 7.7 1.0
O C:PRO184 4.4 11.7 1.0
C C:PRO184 4.5 11.7 1.0
CG C:ASP177 4.6 8.9 1.0
CB C:ASP181 4.6 6.2 1.0
O C:SER222 4.7 4.2 1.0
C C:PRO223 4.7 5.0 1.0
CA C:PRO223 4.7 5.0 1.0
N C:PRO184 4.7 11.7 1.0
N C:ASP181 4.8 6.2 1.0
N C:ASP179 4.8 7.1 1.0
CA C:PRO184 4.9 11.7 1.0
CB C:GLU188 4.9 5.5 1.0

Calcium binding site 6 out of 16 in 6wjj

Go back to Calcium Binding Sites List in 6wjj
Calcium binding site 6 out of 16 in the Anthrax Octamer Prechannel Bound to Full-Length Lethal Factor


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 6 of Anthrax Octamer Prechannel Bound to Full-Length Lethal Factor within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Ca802

b:31.6
occ:1.00
OD2 C:ASP181 2.5 6.2 1.0
OD2 C:ASP235 2.5 2.1 1.0
O C:SER222 2.5 4.2 1.0
OD2 C:ASP179 2.5 7.1 1.0
OE2 C:GLU188 2.5 5.5 1.0
OE1 C:GLU188 2.6 5.5 1.0
CD C:GLU188 2.8 5.5 1.0
O C:LYS225 3.2 3.7 1.0
CA C:CA801 3.2 10.9 1.0
CG C:ASP181 3.6 6.2 1.0
CG C:ASP235 3.7 2.1 1.0
C C:SER222 3.7 4.2 1.0
CG C:ASP179 3.7 7.1 1.0
OG C:SER221 3.8 3.3 1.0
OD1 C:ASP181 4.1 6.2 1.0
CG C:GLU188 4.2 5.5 1.0
CB C:ASP235 4.3 2.1 1.0
C C:LYS225 4.4 3.7 1.0
N C:SER222 4.4 4.2 1.0
CA C:PRO223 4.4 5.0 1.0
OD1 C:ASP179 4.4 7.1 1.0
C C:PRO223 4.5 5.0 1.0
N C:PRO223 4.5 5.0 1.0
CA C:SER222 4.6 4.2 1.0
CB C:SER221 4.6 3.3 1.0
O C:PRO223 4.7 5.0 1.0
OD1 C:ASP235 4.7 2.1 1.0
CB C:ASP181 4.7 6.2 1.0
N C:LYS225 4.7 3.7 1.0
CB C:ASP179 4.8 7.1 1.0
CB C:GLU188 4.9 5.5 1.0
OG1 C:THR228 4.9 4.0 1.0
N C:GLU224 4.9 7.5 1.0

Calcium binding site 7 out of 16 in 6wjj

Go back to Calcium Binding Sites List in 6wjj
Calcium binding site 7 out of 16 in the Anthrax Octamer Prechannel Bound to Full-Length Lethal Factor


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 7 of Anthrax Octamer Prechannel Bound to Full-Length Lethal Factor within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Ca801

b:31.6
occ:1.00
OD2 F:ASP179 2.5 10.6 1.0
OD1 F:ASP179 2.5 10.6 1.0
OE2 F:GLU188 2.5 7.4 1.0
O F:ILE183 2.5 11.5 1.0
OD1 F:ASP181 2.6 15.0 1.0
CG F:ASP179 2.8 10.6 1.0
CD F:GLU188 2.9 7.4 1.0
OE1 F:GLU188 3.1 7.4 1.0
OD2 F:ASP181 3.2 15.0 1.0
CG F:ASP181 3.2 15.0 1.0
OD1 F:ASP177 3.5 12.1 1.0
CA F:CA802 3.5 31.6 1.0
C F:ILE183 3.6 11.5 1.0
CG F:GLU188 4.1 7.4 1.0
OD1 F:ASP185 4.2 13.5 1.0
N F:ILE183 4.2 11.5 1.0
O F:PRO184 4.2 10.5 1.0
CB F:ILE183 4.2 11.5 1.0
CA F:ILE183 4.3 11.5 1.0
O F:PRO223 4.3 5.3 1.0
CB F:ASP179 4.3 10.6 1.0
C F:PRO184 4.5 10.5 1.0
CG F:ASP177 4.6 12.1 1.0
CA F:PRO223 4.6 5.3 1.0
N F:PRO184 4.7 10.5 1.0
CB F:ASP181 4.7 15.0 1.0
C F:PRO223 4.8 5.3 1.0
O F:SER222 4.9 6.0 1.0
N F:ASP179 4.9 10.6 1.0
CA F:PRO184 4.9 10.5 1.0
N F:ASP181 4.9 15.0 1.0
N F:GLY182 5.0 35.6 1.0
CB F:GLU188 5.0 7.4 1.0

Calcium binding site 8 out of 16 in 6wjj

Go back to Calcium Binding Sites List in 6wjj
Calcium binding site 8 out of 16 in the Anthrax Octamer Prechannel Bound to Full-Length Lethal Factor


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 8 of Anthrax Octamer Prechannel Bound to Full-Length Lethal Factor within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Ca802

b:31.6
occ:1.00
OD2 F:ASP181 2.5 15.0 1.0
OD2 F:ASP235 2.5 3.3 1.0
OE1 F:GLU188 2.5 7.4 1.0
OD2 F:ASP179 2.5 10.6 1.0
O F:SER222 2.6 6.0 1.0
OE2 F:GLU188 2.7 7.4 1.0
CD F:GLU188 2.9 7.4 1.0
O F:LYS225 3.2 4.4 1.0
CA F:CA801 3.5 31.6 1.0
CG F:ASP181 3.6 15.0 1.0
CG F:ASP235 3.6 3.3 1.0
OG F:SER221 3.7 4.0 1.0
C F:SER222 3.7 6.0 1.0
CG F:ASP179 3.8 10.6 1.0
CB F:ASP235 4.1 3.3 1.0
OD1 F:ASP181 4.2 15.0 1.0
N F:SER222 4.3 6.0 1.0
CG F:GLU188 4.3 7.4 1.0
CB F:SER221 4.4 4.0 1.0
C F:LYS225 4.5 4.4 1.0
CA F:PRO223 4.5 5.3 1.0
N F:PRO223 4.6 5.3 1.0
OD1 F:ASP179 4.6 10.6 1.0
CA F:SER222 4.6 6.0 1.0
CB F:ASP181 4.6 15.0 1.0
OG1 F:THR228 4.7 3.6 1.0
CB F:ASP179 4.7 10.6 1.0
OD1 F:ASP235 4.7 3.3 1.0
C F:PRO223 4.7 5.3 1.0
N F:LYS225 4.9 4.4 1.0
CB F:GLU188 5.0 7.4 1.0

Calcium binding site 9 out of 16 in 6wjj

Go back to Calcium Binding Sites List in 6wjj
Calcium binding site 9 out of 16 in the Anthrax Octamer Prechannel Bound to Full-Length Lethal Factor


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 9 of Anthrax Octamer Prechannel Bound to Full-Length Lethal Factor within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Ca801

b:10.9
occ:1.00
OD1 D:ASP179 2.5 7.1 1.0
OD2 D:ASP179 2.5 7.1 1.0
OD1 D:ASP181 2.5 6.2 1.0
OE2 D:GLU188 2.5 5.5 1.0
O D:ILE183 2.6 7.7 1.0
OE1 D:GLU188 2.7 5.5 1.0
CD D:GLU188 2.8 5.5 1.0
CG D:ASP179 2.8 7.1 1.0
OD2 D:ASP181 3.1 6.2 1.0
CG D:ASP181 3.2 6.2 1.0
CA D:CA802 3.2 31.6 1.0
OD1 D:ASP177 3.4 8.9 1.0
C D:ILE183 3.7 7.7 1.0
CG D:GLU188 4.1 5.5 1.0
O D:PRO223 4.1 5.0 1.0
OD1 D:ASP185 4.1 20.1 1.0
CB D:ILE183 4.4 7.7 1.0
CB D:ASP179 4.4 7.1 1.0
N D:ILE183 4.4 7.7 1.0
CA D:ILE183 4.4 7.7 1.0
O D:PRO184 4.4 11.7 1.0
C D:PRO184 4.5 11.7 1.0
CG D:ASP177 4.6 8.9 1.0
CB D:ASP181 4.6 6.2 1.0
O D:SER222 4.7 4.2 1.0
C D:PRO223 4.7 5.0 1.0
CA D:PRO223 4.7 5.0 1.0
N D:PRO184 4.7 11.7 1.0
N D:ASP181 4.8 6.2 1.0
N D:ASP179 4.8 7.1 1.0
CA D:PRO184 4.9 11.7 1.0
CB D:GLU188 4.9 5.5 1.0

Calcium binding site 10 out of 16 in 6wjj

Go back to Calcium Binding Sites List in 6wjj
Calcium binding site 10 out of 16 in the Anthrax Octamer Prechannel Bound to Full-Length Lethal Factor


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 10 of Anthrax Octamer Prechannel Bound to Full-Length Lethal Factor within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Ca802

b:31.6
occ:1.00
OD2 D:ASP181 2.5 6.2 1.0
OD2 D:ASP235 2.5 2.1 1.0
O D:SER222 2.5 4.2 1.0
OD2 D:ASP179 2.5 7.1 1.0
OE2 D:GLU188 2.5 5.5 1.0
OE1 D:GLU188 2.6 5.5 1.0
CD D:GLU188 2.8 5.5 1.0
O D:LYS225 3.2 3.7 1.0
CA D:CA801 3.2 10.9 1.0
CG D:ASP181 3.6 6.2 1.0
CG D:ASP235 3.7 2.1 1.0
C D:SER222 3.7 4.2 1.0
CG D:ASP179 3.7 7.1 1.0
OG D:SER221 3.8 3.3 1.0
OD1 D:ASP181 4.1 6.2 1.0
CG D:GLU188 4.2 5.5 1.0
CB D:ASP235 4.3 2.1 1.0
C D:LYS225 4.4 3.7 1.0
N D:SER222 4.4 4.2 1.0
CA D:PRO223 4.4 5.0 1.0
OD1 D:ASP179 4.4 7.1 1.0
C D:PRO223 4.5 5.0 1.0
N D:PRO223 4.5 5.0 1.0
CA D:SER222 4.6 4.2 1.0
CB D:SER221 4.6 3.3 1.0
O D:PRO223 4.7 5.0 1.0
OD1 D:ASP235 4.7 2.1 1.0
CB D:ASP181 4.7 6.2 1.0
N D:LYS225 4.7 3.7 1.0
CB D:ASP179 4.8 7.1 1.0
CB D:GLU188 4.9 5.5 1.0
OG1 D:THR228 4.9 4.0 1.0
N D:GLU224 4.9 7.5 1.0

Reference:

K.Zhou, S.Liu, N.J.Hardenbrook, Y.Cui, B.A.Krantz, Z.H.Zhou. Atomic Structures of Anthrax Prechannel Bound with Full-Length Lethal and Edema Factors. Structure V. 28 879 2020.
ISSN: ISSN 0969-2126
PubMed: 32521227
DOI: 10.1016/J.STR.2020.05.009
Page generated: Thu Dec 17 09:56:23 2020

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