Calcium in PDB 6wn7: Homo Sapiens S100A5

Protein crystallography data

The structure of Homo Sapiens S100A5, PDB code: 6wn7 was solved by A.Perkins, M.J.Harms, C.E.Wong, L.C.Wheeler, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 26.00 / 1.25
Space group P 32
Cell size a, b, c (Å), α, β, γ (°) 76.280, 76.280, 84.240, 90.00, 90.00, 120.00
R / Rfree (%) 17.1 / 20.6

Calcium Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 18;

Binding sites:

The binding sites of Calcium atom in the Homo Sapiens S100A5 (pdb code 6wn7). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 18 binding sites of Calcium where determined in the Homo Sapiens S100A5, PDB code: 6wn7:
Jump to Calcium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Calcium binding site 1 out of 18 in 6wn7

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Calcium binding site 1 out of 18 in the Homo Sapiens S100A5


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Homo Sapiens S100A5 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca101

b:17.2
occ:1.00
OD1 A:ASP64 2.2 19.3 1.0
OD1 A:ASP60 2.2 16.4 1.0
OD1 A:ASN62 2.2 18.5 1.0
O A:HOH225 2.2 18.0 1.0
O A:GLU66 2.2 15.7 1.0
OE2 A:GLU71 2.3 19.5 1.0
OE1 A:GLU71 2.4 17.5 1.0
CD A:GLU71 2.7 16.9 1.0
HD21 A:ASN62 3.1 22.1 1.0
CG A:ASN62 3.1 17.2 1.0
CG A:ASP64 3.1 18.2 1.0
HA A:ASP60 3.3 21.4 1.0
CG A:ASP60 3.3 15.5 1.0
H A:GLU66 3.4 18.8 1.0
H A:ASP64 3.4 18.9 1.0
C A:GLU66 3.4 14.7 1.0
ND2 A:ASN62 3.5 18.6 1.0
OD2 A:ASP64 3.6 19.4 1.0
HA A:ILE67 3.7 14.7 1.0
H A:ASN62 3.7 25.9 1.0
H A:ASP68 4.0 14.5 1.0
HD13 A:ILE67 4.0 14.7 1.0
HB2 A:GLU66 4.1 26.6 1.0
CA A:ASP60 4.1 17.9 1.0
N A:GLU66 4.1 15.8 1.0
OD2 A:ASP60 4.2 18.6 1.0
N A:ASP64 4.2 15.9 1.0
CG A:GLU71 4.2 16.8 1.0
CB A:ASP60 4.2 17.4 1.0
H A:SER63 4.3 24.8 1.0
CA A:GLU66 4.3 15.6 1.0
HD22 A:ASN62 4.3 22.1 1.0
CB A:ASP64 4.3 16.8 1.0
C A:ASP60 4.3 20.4 1.0
N A:ILE67 4.4 12.5 1.0
CA A:ILE67 4.4 12.4 1.0
N A:ASN62 4.4 21.7 1.0
CB A:ASN62 4.5 18.5 1.0
HB2 A:ASP60 4.5 20.7 1.0
HB3 A:ASP64 4.5 20.0 1.0
HG3 A:GLU71 4.5 20.0 1.0
H A:GLN65 4.6 19.1 1.0
HD12 A:ILE67 4.6 14.7 1.0
N A:ASP68 4.6 12.2 1.0
HG2 A:GLU71 4.6 20.0 1.0
N A:SER63 4.6 20.8 1.0
O A:ASP60 4.7 22.4 1.0
CA A:ASP64 4.7 14.0 1.0
CB A:GLU66 4.7 22.3 1.0
CD1 A:ILE67 4.7 12.4 1.0
H A:LYS61 4.7 24.0 1.0
N A:LYS61 4.8 20.1 1.0
HB3 A:ASN62 4.8 22.1 1.0
N A:GLN65 4.8 16.1 1.0
CA A:ASN62 4.8 18.8 1.0
C A:ASP64 4.9 15.4 1.0
C A:ASN62 4.9 20.3 1.0
HB2 A:GLU71 4.9 17.2 1.0
OD2 A:ASP68 4.9 21.9 1.0
C A:ILE67 5.0 12.3 1.0

Calcium binding site 2 out of 18 in 6wn7

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Calcium binding site 2 out of 18 in the Homo Sapiens S100A5


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Homo Sapiens S100A5 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca102

b:74.6
occ:1.00
HA A:GLU71 2.7 19.1 1.0
HB A:VAL74 2.8 16.0 1.0
O A:LEU59 2.9 18.5 1.0
HA A:LEU59 2.9 23.5 1.0
HG21 A:VAL74 2.9 15.0 1.0
O A:HOH248 2.9 35.9 1.0
HG11 A:VAL74 3.3 17.4 1.0
HG2 A:GLU71 3.3 20.0 1.0
CB A:VAL74 3.4 13.5 1.0
HB3 A:GLU71 3.4 17.2 1.0
HD23 A:LEU59 3.4 17.4 1.0
O A:GLU71 3.5 15.6 1.0
CG2 A:VAL74 3.5 12.6 1.0
CA A:GLU71 3.5 16.1 1.0
C A:LEU59 3.6 18.7 1.0
CA A:LEU59 3.6 19.7 1.0
HD22 A:LEU59 3.6 17.4 1.0
HG23 A:VAL74 3.8 15.0 1.0
CG1 A:VAL74 3.8 14.7 1.0
CB A:GLU71 3.8 14.5 1.0
HB3 A:LEU59 3.9 19.9 1.0
HG12 A:VAL74 4.0 17.4 1.0
C A:GLU71 4.0 14.4 1.0
CD2 A:LEU59 4.0 14.6 1.0
CG A:GLU71 4.0 16.8 1.0
H A:LYS61 4.1 24.0 1.0
CB A:LEU59 4.2 16.7 1.0
O A:SER58 4.3 22.8 1.0
HG22 A:VAL74 4.4 15.0 1.0
O A:HOH252 4.4 20.7 1.0
H A:VAL74 4.5 16.1 0.4
H A:VAL74 4.5 16.1 0.6
HG3 A:GLU71 4.6 20.0 1.0
O A:LYS70 4.6 18.4 1.0
HG13 A:VAL74 4.7 17.4 1.0
N A:GLU71 4.7 17.4 1.0
HD21 A:LEU59 4.8 17.4 1.0
CG A:LEU59 4.8 12.2 1.0
HB2 A:GLU71 4.8 17.2 1.0
N A:LEU59 4.8 24.1 1.0
CA A:VAL74 4.8 13.4 1.0
CB A:LYS61 4.8 24.2 1.0
N A:ASP60 4.8 18.1 1.0
N A:LYS61 4.9 20.1 1.0
H A:PHE75 5.0 14.6 1.0

Calcium binding site 3 out of 18 in 6wn7

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Calcium binding site 3 out of 18 in the Homo Sapiens S100A5


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Homo Sapiens S100A5 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca103

b:87.9
occ:1.00
H A:LEU5 2.2 16.0 1.0
HB A:THR3 2.2 17.4 1.0
HD2 A:PRO4 2.3 19.8 1.0
OE2 B:GLU41 2.3 18.2 1.0
HB3 B:GLU41 2.5 19.9 1.0
HA B:GLU41 2.8 18.3 1.0
HB3 A:LEU5 2.9 13.6 1.0
N A:LEU5 3.0 13.5 1.0
HB2 A:LEU5 3.1 13.6 1.0
O B:GLU41 3.1 15.3 1.0
CB A:THR3 3.1 14.6 1.0
CD A:PRO4 3.1 16.6 1.0
CB B:GLU41 3.3 16.8 1.0
CA B:GLU41 3.4 15.4 1.0
CB A:LEU5 3.4 11.4 1.0
N A:PRO4 3.4 16.1 1.0
CD B:GLU41 3.4 17.4 1.0
OG1 A:THR3 3.4 13.7 1.0
HG1 A:THR3 3.5 16.2 1.0
HB2 A:PRO4 3.5 19.6 1.0
C B:GLU41 3.7 14.4 1.0
HG2 A:PRO4 3.8 19.6 1.0
CA A:LEU5 3.8 11.5 1.0
HD3 A:PRO4 3.9 19.8 1.0
CG A:PRO4 3.9 16.5 1.0
C A:THR3 3.9 17.0 1.0
CG B:GLU41 3.9 18.8 1.0
C A:PRO4 4.0 12.6 1.0
CB A:PRO4 4.0 16.5 1.0
HG21 A:THR3 4.0 19.2 1.0
CA A:PRO4 4.0 15.9 1.0
CA A:THR3 4.0 17.1 1.0
HB2 B:GLU41 4.1 19.9 1.0
CG2 A:THR3 4.1 16.1 1.0
H A:GLU6 4.1 13.7 1.0
HA A:THR3 4.3 20.4 1.0
HG22 A:THR3 4.4 19.2 1.0
HG21 B:THR15 4.4 16.0 1.0
HG3 B:GLU41 4.4 22.4 1.0
HA A:LEU5 4.5 13.7 1.0
OE1 B:GLU41 4.5 17.9 1.0
HD22 A:LEU5 4.5 20.4 1.0
O B:HOH251 4.6 26.3 1.0
HG2 B:GLU41 4.6 22.4 1.0
N B:GLU41 4.7 13.9 1.0
N A:GLU6 4.7 11.6 1.0
O A:THR3 4.7 16.1 1.0
CG A:LEU5 4.8 15.2 1.0
HG3 A:PRO4 4.8 19.6 1.0
C A:LEU5 4.8 12.1 1.0
O B:LYS40 4.9 15.6 1.0
HB3 A:PRO4 4.9 19.6 1.0
HG23 A:THR3 4.9 19.2 1.0
HA A:PRO4 4.9 18.9 1.0
HD23 A:LEU5 4.9 20.4 1.0
N B:LEU42 5.0 14.6 0.5
CD2 A:LEU5 5.0 17.2 1.0
N B:LEU42 5.0 14.6 0.5

Calcium binding site 4 out of 18 in 6wn7

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Calcium binding site 4 out of 18 in the Homo Sapiens S100A5


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of Homo Sapiens S100A5 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca104

b:14.8
occ:1.00
O A:HOH222 2.1 17.9 1.0
O A:SER20 2.2 15.4 1.0
O A:SER25 2.3 18.7 1.0
O A:GLU23 2.3 17.1 1.0
OE1 A:GLU33 2.3 15.4 1.0
O A:THR28 2.5 15.8 1.0
OE2 A:GLU33 2.6 15.5 1.0
CD A:GLU33 2.8 13.1 1.0
C A:SER20 3.2 16.5 1.0
HA A:SER20 3.4 15.1 1.0
H A:GLU23 3.4 22.6 1.0
C A:SER25 3.5 17.2 1.0
C A:GLU23 3.5 14.7 1.0
HA A:LYS26 3.7 18.5 1.0
C A:THR28 3.7 12.6 1.0
HA A:LEU29 3.8 16.6 1.0
HG1 A:THR28 3.8 22.5 1.0
H A:SER30 3.8 15.3 1.0
CA A:SER20 3.8 12.8 1.0
HB2 A:SER20 3.8 15.0 1.0
H A:THR28 3.9 17.8 1.0
HA3 A:GLY24 4.0 15.8 1.0
H A:ARG22 4.0 25.4 1.0
HA2 A:GLY21 4.1 25.6 1.0
C A:GLY24 4.1 13.2 1.0
N A:GLU23 4.1 19.0 1.0
N A:SER25 4.2 13.1 1.0
N A:GLY21 4.3 18.4 1.0
HG2 A:GLU23 4.3 25.7 1.0
CG A:GLU33 4.3 13.2 1.0
N A:LYS26 4.4 14.9 1.0
CB A:SER20 4.4 12.6 1.0
CA A:GLY24 4.4 13.3 1.0
HG3 A:GLU23 4.4 25.7 1.0
O A:HOH208 4.4 15.4 1.0
CA A:LYS26 4.4 15.5 1.0
CA A:SER25 4.4 15.9 1.0
N A:GLY24 4.4 13.4 1.0
O A:GLY24 4.4 17.9 1.0
H A:SER25 4.4 15.5 1.0
CA A:GLU23 4.5 15.9 1.0
CA A:LEU29 4.5 14.0 1.0
N A:ARG22 4.5 21.3 1.0
N A:SER30 4.5 12.9 1.0
HB3 A:SER25 4.5 15.2 1.0
OG1 A:THR28 4.5 18.9 1.0
N A:LEU29 4.6 12.6 1.0
N A:THR28 4.6 15.0 1.0
CA A:GLY21 4.6 21.4 1.0
HG3 A:GLU33 4.6 15.6 1.0
HB3 A:SER30 4.7 16.6 1.0
CA A:THR28 4.7 12.5 1.0
HG2 A:GLU33 4.7 15.6 1.0
CG A:GLU23 4.8 21.6 1.0
O A:TYR19 4.8 17.0 1.0
HB2 A:GLU33 4.8 15.5 1.0
C A:LYS26 4.9 13.6 1.0
C A:GLY21 4.9 20.9 1.0
OE2 A:GLU66 4.9 33.2 1.0
C A:LEU29 5.0 13.2 1.0
H A:GLY21 5.0 21.9 1.0

Calcium binding site 5 out of 18 in 6wn7

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Calcium binding site 5 out of 18 in the Homo Sapiens S100A5


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 5 of Homo Sapiens S100A5 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca101

b:12.0
occ:1.00
O B:SER20 2.3 13.1 1.0
O B:GLU23 2.3 15.7 1.0
O B:HOH202 2.3 16.0 1.0
OE1 B:GLU33 2.4 11.7 1.0
O B:THR28 2.4 11.6 1.0
O B:SER25 2.4 11.2 1.0
OE2 B:GLU33 2.6 11.1 1.0
CD B:GLU33 2.8 10.9 1.0
H B:GLU23 3.3 17.0 1.0
C B:SER20 3.4 11.3 1.0
HA B:SER20 3.4 13.9 1.0
C B:GLU23 3.5 14.6 1.0
C B:THR28 3.6 10.9 1.0
C B:SER25 3.6 12.0 1.0
H B:SER30 3.6 13.4 1.0
HA B:LEU29 3.7 12.9 1.0
HG3 B:GLU23 3.8 23.1 1.0
H B:THR28 3.8 13.0 1.0
CA B:SER20 3.9 11.8 1.0
HA B:LYS26 3.9 13.1 1.0
HG1 B:THR28 3.9 19.9 1.0
HB2 B:SER20 4.1 13.1 1.0
N B:GLU23 4.1 14.3 1.0
HA3 B:GLY24 4.1 14.8 1.0
C B:GLY24 4.2 12.3 1.0
N B:SER25 4.2 12.4 1.0
N B:SER30 4.3 11.3 1.0
CG B:GLU33 4.4 10.9 1.0
HA2 B:GLY21 4.4 15.7 1.0
H B:ARG22 4.4 17.5 1.0
CA B:GLU23 4.4 14.7 1.0
OE2 B:GLU66 4.4 17.4 1.0
CA B:LEU29 4.4 10.9 1.0
N B:GLY21 4.4 13.0 1.0
N B:LEU29 4.4 10.9 1.0
N B:THR28 4.5 10.9 1.0
HB3 B:SER25 4.5 15.1 1.0
N B:GLY24 4.5 12.2 1.0
H B:SER25 4.5 14.7 1.0
CA B:GLY24 4.5 12.5 1.0
HB3 B:SER30 4.5 16.2 1.0
CA B:SER25 4.5 12.4 1.0
O B:GLY24 4.5 14.1 1.0
O B:HOH255 4.5 24.4 1.0
N B:LYS26 4.5 12.9 1.0
CB B:SER20 4.6 11.0 1.0
CA B:LYS26 4.6 11.0 1.0
OG1 B:THR28 4.6 16.7 1.0
CG B:GLU23 4.6 19.4 1.0
CA B:THR28 4.6 11.8 1.0
O B:TYR19 4.7 14.2 1.0
N B:ARG22 4.7 14.7 1.0
HG2 B:GLU23 4.7 23.1 1.0
HG3 B:GLU33 4.7 12.9 1.0
C B:LEU29 4.8 10.8 1.0
CA B:GLY21 4.8 13.2 1.0
C B:LYS26 4.8 11.0 1.0
HB2 B:GLU33 4.8 14.4 1.0
HG2 B:GLU33 4.8 12.9 1.0
C B:GLY21 4.9 15.8 1.0
CB B:SER25 5.0 12.8 1.0

Calcium binding site 6 out of 18 in 6wn7

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Calcium binding site 6 out of 18 in the Homo Sapiens S100A5


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 6 of Homo Sapiens S100A5 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca102

b:16.4
occ:1.00
O B:GLU66 2.3 14.4 1.0
OD1 B:ASN62 2.3 14.9 1.0
OD1 B:ASP60 2.3 16.3 1.0
O B:HOH204 2.3 21.1 1.0
OD1 B:ASP64 2.4 19.4 1.0
OE1 B:GLU71 2.5 12.9 1.0
OE2 B:GLU71 2.6 15.2 1.0
CD B:GLU71 2.9 14.0 1.0
CG B:ASP64 3.2 20.6 1.0
CG B:ASN62 3.3 13.1 1.0
HA B:ASP60 3.4 14.6 1.0
CG B:ASP60 3.4 14.2 1.0
OD2 B:ASP64 3.4 23.6 1.0
C B:GLU66 3.4 13.3 1.0
HD21 B:ASN62 3.5 18.2 1.0
H B:GLU66 3.5 16.9 1.0
H B:ASN62 3.6 18.9 1.0
H B:ASP64 3.6 19.8 1.0
HA B:ILE67 3.7 17.5 1.0
ND2 B:ASN62 3.8 15.3 1.0
H B:ASP68 3.9 14.1 1.0
HB2 B:GLU66 3.9 17.4 1.0
CA B:ASP60 4.1 12.3 1.0
HD13 B:ILE67 4.1 23.0 1.0
OD2 B:ASP60 4.2 17.2 1.0
N B:GLU66 4.2 14.2 1.0
CB B:ASP60 4.2 11.3 1.0
CA B:GLU66 4.4 12.4 1.0
N B:ILE67 4.4 13.1 1.0
CG B:GLU71 4.4 16.7 1.0
N B:ASN62 4.4 15.9 1.0
N B:ASP64 4.5 16.7 1.0
CA B:ILE67 4.5 14.7 1.0
H B:LYS61 4.5 20.6 1.0
C B:ASP60 4.5 16.3 1.0
HB2 B:ASP60 4.5 13.4 1.0
H B:SER63 4.5 18.1 1.0
N B:ASP68 4.6 11.9 1.0
CB B:ASP64 4.6 19.7 1.0
CB B:ASN62 4.6 12.3 1.0
CB B:GLU66 4.6 14.6 1.0
N B:LYS61 4.6 17.3 1.0
HD22 B:ASN62 4.7 18.2 1.0
H B:GLN65 4.7 19.0 1.0
HG3 B:GLU71 4.7 19.9 1.0
O B:HOH227 4.8 14.6 1.0
HG2 B:GLU71 4.8 19.9 1.0
N B:SER63 4.8 15.2 1.0
HB3 B:ASP68 4.8 17.2 1.0
HB3 B:ASN62 4.9 14.7 1.0
CA B:ASN62 4.9 14.2 1.0
HB3 B:ASP64 4.9 23.5 1.0
N B:GLN65 5.0 16.0 1.0
CA B:ASP64 5.0 16.6 1.0
C B:ASN62 5.0 13.5 1.0
HD12 B:ILE67 5.0 23.0 1.0
C B:ILE67 5.0 10.9 1.0
HB2 B:GLU71 5.0 17.3 1.0
CD1 B:ILE67 5.0 19.3 1.0

Calcium binding site 7 out of 18 in 6wn7

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Calcium binding site 7 out of 18 in the Homo Sapiens S100A5


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 7 of Homo Sapiens S100A5 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca103

b:0.9
occ:1.00
O B:HOH263 2.5 20.9 1.0
O B:HOH258 2.5 22.5 1.0
O B:HOH222 2.8 13.8 1.0
HA B:GLU71 2.9 15.1 1.0
HG3 B:LYS61 2.9 18.3 1.0
HG2 B:LYS70 3.1 21.0 1.0
HG2 B:GLU71 3.3 19.9 1.0
HG21 B:VAL74 3.3 16.6 1.0
HE2 B:LYS70 3.4 34.0 1.0
HG23 B:VAL74 3.6 16.6 1.0
CA B:GLU71 3.7 12.8 1.0
HG3 B:GLU71 3.8 19.9 1.0
CG2 B:VAL74 3.9 14.0 1.0
CG B:LYS61 3.9 15.4 1.0
CG B:GLU71 3.9 16.7 1.0
O B:LYS70 4.0 13.4 1.0
CG B:LYS70 4.0 17.7 1.0
N B:GLU71 4.1 14.0 1.0
HB2 B:LYS61 4.1 19.0 1.0
HD2 B:LYS61 4.2 19.0 1.0
C B:LYS70 4.2 12.0 1.0
HG3 B:LYS70 4.2 21.0 1.0
CE B:LYS70 4.3 28.5 1.0
HG2 B:LYS61 4.3 18.3 1.0
CB B:GLU71 4.4 14.6 1.0
HG22 B:VAL74 4.4 16.6 1.0
H B:GLU71 4.5 16.6 1.0
O B:HOH220 4.5 15.0 1.0
HE3 B:LYS70 4.6 34.0 1.0
CD B:LYS61 4.6 16.0 1.0
CB B:LYS61 4.6 16.0 1.0
HB3 B:GLU71 4.6 17.3 1.0
O B:HOH238 4.6 18.9 1.0
O B:LEU59 4.7 14.8 1.0
CD B:LYS70 4.7 21.1 1.0
C B:GLU71 4.9 12.6 1.0
O B:HOH227 4.9 14.6 1.0
HE3 B:LYS61 4.9 20.9 1.0
HB B:VAL74 4.9 16.1 1.0
HD3 B:LYS70 5.0 25.2 1.0
O B:GLU71 5.0 13.1 1.0
HB3 B:LYS70 5.0 16.3 1.0

Calcium binding site 8 out of 18 in 6wn7

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Calcium binding site 8 out of 18 in the Homo Sapiens S100A5


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 8 of Homo Sapiens S100A5 within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Ca101

b:12.3
occ:1.00
O C:GLU66 2.2 12.4 1.0
OD1 C:ASP60 2.3 12.0 1.0
OD1 C:ASN62 2.3 11.0 1.0
O C:HOH256 2.4 14.8 1.0
OE1 C:GLU71 2.5 11.5 1.0
OD1 C:ASP64 2.5 16.1 1.0
OE2 C:GLU71 2.6 11.5 1.0
CD C:GLU71 2.9 11.0 1.0
HA C:ASP60 3.3 13.1 1.0
C C:GLU66 3.4 11.2 1.0
CG C:ASN62 3.4 11.0 1.0
CG C:ASP60 3.5 11.1 1.0
H C:GLU66 3.5 15.3 1.0
CG C:ASP64 3.5 11.1 1.0
H C:ASN62 3.6 14.6 1.0
H C:ASP64 3.6 13.9 1.0
HD21 C:ASN62 3.7 18.5 1.0
HA C:ILE67 3.7 13.3 1.0
OD2 C:ASP64 3.9 11.1 1.0
HD13 C:ILE67 3.9 15.5 1.0
ND2 C:ASN62 4.0 15.6 1.0
H C:ASP68 4.0 13.1 1.0
CA C:ASP60 4.1 11.0 1.0
HB2 C:GLU66 4.1 16.6 1.0
N C:GLU66 4.2 12.9 1.0
CB C:ASP60 4.2 11.1 1.0
N C:ILE67 4.3 11.5 1.0
CA C:GLU66 4.3 11.9 1.0
OD2 C:ASP60 4.3 11.8 1.0
H C:LYS61 4.4 12.9 1.0
C C:ASP60 4.4 11.9 1.0
N C:ASN62 4.4 12.3 1.0
CG C:GLU71 4.4 11.2 1.0
CA C:ILE67 4.4 11.2 1.0
H C:SER63 4.4 13.1 1.0
N C:ASP64 4.4 11.7 1.0
O C:HOH206 4.5 40.4 1.0
HB2 C:ASP60 4.5 13.1 1.0
O C:HOH214 4.5 15.2 1.0
N C:LYS61 4.6 10.9 1.0
CB C:ASN62 4.7 12.1 1.0
H C:GLN65 4.7 13.3 1.0
N C:ASP68 4.7 11.1 1.0
CB C:GLU66 4.7 14.0 1.0
CB C:ASP64 4.7 11.4 1.0
N C:SER63 4.8 11.0 1.0
HG2 C:GLU71 4.8 13.3 1.0
O C:HOH219 4.8 19.2 1.0
HG3 C:GLU71 4.8 13.3 1.0
HD22 C:ASN62 4.8 18.5 1.0
CD1 C:ILE67 4.9 13.1 1.0
CA C:ASN62 4.9 11.0 1.0
N C:GLN65 4.9 11.2 1.0
CA C:ASP64 5.0 11.6 1.0
C C:ASN62 5.0 12.4 1.0
O C:ASP60 5.0 13.1 1.0
HB3 C:ASN62 5.0 14.4 1.0

Calcium binding site 9 out of 18 in 6wn7

Go back to Calcium Binding Sites List in 6wn7
Calcium binding site 9 out of 18 in the Homo Sapiens S100A5


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 9 of Homo Sapiens S100A5 within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Ca102

b:14.3
occ:1.00
O C:SER25 2.3 14.0 1.0
OE1 C:GLU33 2.3 14.6 1.0
O C:SER20 2.3 12.5 1.0
O C:THR28 2.4 15.0 1.0
O C:HOH234 2.5 16.6 1.0
O C:GLU23 2.5 18.2 1.0
OE2 C:GLU33 2.9 14.0 1.0
CD C:GLU33 3.0 13.1 1.0
C C:SER20 3.4 12.3 1.0
HA C:SER20 3.4 13.6 1.0
C C:SER25 3.5 14.1 1.0
H C:GLU23 3.5 21.8 1.0
C C:THR28 3.6 11.3 1.0
HA C:LEU29 3.6 13.5 1.0
C C:GLU23 3.7 16.2 1.0
H C:THR28 3.8 13.6 1.0
HA C:LYS26 3.8 14.8 1.0
H C:SER30 3.9 14.7 1.0
CA C:SER20 3.9 11.5 1.0
HG3 C:GLU23 4.0 33.8 1.0
HB2 C:SER20 4.0 16.6 1.0
N C:SER25 4.1 15.0 1.0
H C:SER25 4.2 17.8 1.0
N C:GLU23 4.3 18.3 1.0
C C:GLY24 4.3 14.5 1.0
HG2 C:GLU23 4.3 33.8 1.0
CA C:SER25 4.3 14.5 1.0
HA3 C:GLY24 4.3 15.2 1.0
H C:ARG22 4.3 17.9 1.0
CA C:LEU29 4.4 11.4 1.0
HB3 C:SER25 4.4 18.3 1.0
HA2 C:GLY21 4.4 18.6 1.0
N C:LEU29 4.4 11.3 1.0
N C:LYS26 4.4 12.6 1.0
CG C:GLU33 4.4 11.7 1.0
CA C:LYS26 4.5 12.5 1.0
N C:THR28 4.5 11.5 1.0
OE2 C:GLU66 4.5 17.6 1.0
N C:GLY21 4.5 13.9 1.0
N C:SER30 4.5 12.4 1.0
CB C:SER20 4.5 14.0 1.0
CA C:GLU23 4.6 18.5 1.0
CG C:GLU23 4.6 28.3 1.0
CA C:THR28 4.6 11.3 1.0
N C:GLY24 4.6 14.8 1.0
O C:GLY24 4.6 17.9 1.0
CA C:GLY24 4.6 12.8 1.0
OG1 C:THR28 4.7 12.5 1.0
O C:HOH263 4.7 22.6 1.0
HG3 C:GLU33 4.8 13.8 1.0
N C:ARG22 4.8 15.1 1.0
HB2 C:GLU33 4.8 15.9 1.0
C C:LEU29 4.8 12.4 1.0
C C:LYS26 4.8 11.4 1.0
CA C:GLY21 4.8 15.6 1.0
O C:TYR19 4.8 16.0 1.0
CB C:SER25 4.9 15.4 1.0
HB3 C:SER30 4.9 18.4 1.0
HG2 C:GLU33 4.9 13.8 1.0
H C:LEU27 5.0 15.1 1.0

Calcium binding site 10 out of 18 in 6wn7

Go back to Calcium Binding Sites List in 6wn7
Calcium binding site 10 out of 18 in the Homo Sapiens S100A5


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 10 of Homo Sapiens S100A5 within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Ca103

b:40.7
occ:1.00
O C:HOH220 2.3 16.2 1.0
OG1 C:THR15 2.7 14.7 1.0
HB2 D:PRO4 3.2 16.4 1.0
HG23 C:THR15 3.3 17.2 1.0
HG1 C:THR15 3.3 17.5 1.0
HG21 C:THR15 3.4 17.2 1.0
HG23 C:THR11 3.5 14.4 1.0
CG2 C:THR15 3.6 14.5 1.0
HB2 D:LEU5 3.7 15.5 1.0
CB C:THR15 3.7 12.9 1.0
H D:LEU5 3.8 16.1 1.0
OE1 C:GLU41 3.9 15.5 1.0
HD2 D:PRO4 4.0 16.7 1.0
HG2 D:PRO4 4.0 16.3 1.0
HA C:THR15 4.0 15.1 1.0
CB D:PRO4 4.1 13.8 1.0
O C:HOH235 4.2 23.7 1.0
CG2 C:THR11 4.2 12.2 1.0
CD C:GLU41 4.3 15.0 1.0
HG22 C:THR11 4.3 14.4 1.0
HG21 C:THR11 4.3 14.4 1.0
N D:LEU5 4.3 13.6 1.0
HG3 C:GLU41 4.3 16.2 1.0
CA C:THR15 4.4 12.7 1.0
CG D:PRO4 4.5 13.8 1.0
HB C:THR15 4.5 15.3 1.0
HB3 C:GLU41 4.6 18.9 1.0
CB D:LEU5 4.6 13.0 1.0
HG22 C:THR15 4.6 17.2 1.0
HB3 D:PRO4 4.6 16.4 1.0
CD D:PRO4 4.7 14.0 1.0
O C:HOH245 4.7 18.7 1.0
OE2 C:GLU41 4.7 17.3 1.0
CG C:GLU41 4.8 13.6 1.0
HB3 D:LEU5 4.8 15.5 1.0
O C:THR11 4.9 11.4 1.0
HE2 C:TYR19 4.9 15.2 1.0
CA D:LEU5 5.0 12.4 1.0
H C:THR15 5.0 15.8 1.0
C D:PRO4 5.0 11.7 1.0
N C:THR15 5.0 13.3 1.0

Reference:

L.C.Wheeler, A.Perkins, C.E.Wong, M.J.Harms. Learning Peptide Recognition Rules For A Low-Specificity Protein. Protein Sci. V. 29 2259 2020.
ISSN: ESSN 1469-896X
PubMed: 32979254
DOI: 10.1002/PRO.3958
Page generated: Sat Dec 12 07:52:01 2020

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