Calcium in PDB 6wu7: Human Calcium and Integrin Binding Protein 3 E150Q K151H

The structure of Human Calcium and Integrin Binding Protein 3 E150Q K151H, PDB code: 6wu7 was solved by L.Shapiro, G.Dionne, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	73.08 / 1.84
Space group	P 31 2 1
Cell size a, b, c (Å), α, β, γ (°)	84.386, 84.386, 125.821, 90, 90, 120
R / Rfree (%)	16.2 / 19.5

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 11;

Binding sites:

The binding sites of Calcium atom in the Human Calcium and Integrin Binding Protein 3 E150Q K151H (pdb code 6wu7). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 11 binding sites of Calcium where determined in the Human Calcium and Integrin Binding Protein 3 E150Q K151H, PDB code: 6wu7:
Jump to Calcium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Calcium binding site 1 out of 11 in the Human Calcium and Integrin Binding Protein 3 E150Q K151H


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Human Calcium and Integrin Binding Protein 3 E150Q K151H within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca201 b:29.9 occ:1.00 OD2 A:ASP127 2.2 33.5 1.0 O A:TYR122 2.2 32.1 1.0 OD1 A:ASN118 2.2 37.7 1.0 OD1 A:ASP120 2.3 32.8 1.0 OD1 A:ASP116 2.4 28.1 1.0 O A:HOH413 2.5 32.2 1.0 CG A:ASP120 3.2 34.9 1.0 H A:ASP120 3.3 38.6 1.0 CG A:ASN118 3.3 49.5 1.0 H A:TYR122 3.4 32.0 1.0 CG A:ASP127 3.4 29.6 1.0 C A:TYR122 3.4 26.9 1.0 CG A:ASP116 3.5 30.8 1.0 H A:ASN118 3.5 41.7 1.0 HD21 A:ASN118 3.5 50.8 1.0 HA A:ASP116 3.6 31.3 1.0 HA A:ILE123 3.6 23.2 1.0 OD2 A:ASP120 3.8 38.3 1.0 ND2 A:ASN118 3.8 50.8 1.0 H A:CYS124 3.8 32.4 1.0 HG A:CYS124 3.9 40.0 1.0 OD1 A:ASP127 3.9 38.6 1.0 N A:ASP120 4.1 38.6 1.0 N A:TYR122 4.1 32.0 1.0 HB2 A:TYR122 4.1 31.4 1.0 CA A:ASP116 4.2 31.3 1.0 CB A:ASP116 4.3 27.6 1.0 OD2 A:ASP116 4.3 27.9 1.0 H A:ASN119 4.3 35.3 1.0 N A:ASN118 4.3 41.7 1.0 CA A:TYR122 4.3 28.7 1.0 N A:ILE123 4.3 28.3 1.0 C A:ASP116 4.4 31.1 1.0 CB A:ASP120 4.4 38.8 1.0 HB2 A:ASP116 4.4 27.6 1.0 CA A:ILE123 4.4 23.2 1.0 H A:PHE117 4.4 31.4 1.0 HB3 A:ASP120 4.5 38.8 1.0 N A:CYS124 4.6 32.4 1.0 N A:ASN119 4.6 35.3 1.0 N A:PHE117 4.6 31.4 1.0 H A:ASP121 4.6 31.1 1.0 HB2 A:ASP127 4.6 32.0 1.0 O A:HOH314 4.6 34.7 1.0 CB A:ASP127 4.6 32.0 1.0 CB A:ASN118 4.6 42.6 1.0 CA A:ASP120 4.6 35.9 1.0 HD22 A:ASN118 4.7 50.8 1.0 CB A:TYR122 4.7 31.4 1.0 HB3 A:CYS124 4.8 34.8 1.0 CA A:ASN118 4.8 40.5 1.0 C A:ASN118 4.8 42.7 1.0 N A:ASP121 4.8 31.1 1.0 C A:ASP120 4.8 33.3 1.0 O A:ASP116 4.8 32.6 1.0 SG A:CYS124 4.9 40.0 1.0 HB3 A:ASP127 4.9 32.0 1.0 HG12 A:ILE123 5.0 26.2 1.0

Calcium binding site 2 out of 11 in the Human Calcium and Integrin Binding Protein 3 E150Q K151H


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Human Calcium and Integrin Binding Protein 3 E150Q K151H within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca202 b:30.1 occ:1.00 O A:ARG163 2.2 32.1 1.0 OD1 A:ASP159 2.2 53.0 1.0 OD1 A:ASP161 2.3 37.9 1.0 OD1 A:ASP157 2.3 33.0 1.0 O A:HOH301 2.3 42.0 1.0 O A:HOH375 2.4 31.4 1.0 OD2 A:ASP168 2.6 30.8 1.0 CG A:ASP161 3.2 45.5 1.0 CG A:ASP159 3.3 56.5 1.0 CG A:ASP157 3.4 34.7 1.0 H A:ARG163 3.4 32.4 1.0 C A:ARG163 3.4 34.8 1.0 H A:ASP159 3.5 44.8 1.0 H A:ASP161 3.5 44.1 1.0 HA A:ASP157 3.6 36.2 1.0 HA A:LEU164 3.7 28.9 1.0 OD2 A:ASP161 3.7 39.7 1.0 H A:SER165 3.7 24.6 1.0 OD2 A:ASP159 3.8 63.2 1.0 CG A:ASP168 3.8 36.2 1.0 O A:HOH383 4.1 44.8 1.0 H A:GLY158 4.1 43.0 1.0 N A:ARG163 4.1 32.4 1.0 OD2 A:ASP157 4.2 36.6 1.0 CB A:ASP157 4.2 36.8 1.0 CA A:ASP157 4.2 36.2 1.0 H A:HIS160 4.2 37.6 1.0 OD1 A:ASP168 4.2 35.1 1.0 HG3 A:ARG163 4.2 42.5 1.0 HB2 A:ASP157 4.3 36.8 1.0 N A:ASP159 4.3 44.8 1.0 N A:LEU164 4.3 28.7 1.0 HD23 A:LEU164 4.4 36.4 1.0 N A:ASP161 4.4 44.1 1.0 CA A:LEU164 4.4 28.9 1.0 C A:ASP157 4.4 39.0 1.0 N A:GLY158 4.4 43.0 1.0 N A:SER165 4.4 24.6 1.0 CA A:ARG163 4.4 31.9 1.0 CB A:ASP161 4.4 42.6 1.0 HG2 A:ARG163 4.5 42.5 1.0 H A:GLY162 4.5 40.2 1.0 HB3 A:ASP161 4.6 42.6 1.0 CB A:ASP159 4.6 55.4 1.0 N A:HIS160 4.6 37.6 1.0 HB3 A:SER165 4.7 30.4 1.0 CG A:ARG163 4.8 42.6 1.0 CA A:ASP159 4.8 52.4 1.0 CA A:ASP161 4.8 43.3 1.0 C A:LEU164 4.8 24.0 1.0 N A:GLY162 4.8 40.2 1.0 C A:ASP159 4.8 46.1 1.0 HB3 A:ASP159 4.9 55.4 1.0 C A:ASP161 5.0 40.9 1.0

Calcium binding site 3 out of 11 in the Human Calcium and Integrin Binding Protein 3 E150Q K151H


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Human Calcium and Integrin Binding Protein 3 E150Q K151H within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca203 b:76.1 occ:1.00 O A:HOH399 2.5 47.3 1.0 O A:HOH361 3.4 46.9 1.0 OD1 A:ASP36 3.7 36.0 1.0 OD2 A:ASP36 3.9 34.7 1.0 CG A:ASP36 4.2 35.9 1.0 O A:HOH402 4.8 52.3 1.0

Calcium binding site 4 out of 11 in the Human Calcium and Integrin Binding Protein 3 E150Q K151H


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of Human Calcium and Integrin Binding Protein 3 E150Q K151H within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca204 b:62.4 occ:1.00 O B:HOH353 2.1 55.1 1.0 OE2 B:GLU155 2.5 44.4 1.0 O B:HOH462 2.5 46.5 1.0 OE1 B:GLU155 2.6 45.9 1.0 OE1 A:GLU155 2.7 75.1 1.0 OE2 A:GLU155 2.7 78.0 1.0 CD B:GLU155 2.9 46.3 1.0 CD A:GLU155 3.1 66.7 1.0 O B:HOH401 4.0 56.9 1.0 CG B:GLU155 4.4 41.8 1.0 CG A:GLU155 4.6 63.3 1.0 HA B:GLU155 4.7 31.9 1.0 HG3 B:GLU155 4.8 41.9 1.0 HA A:GLU155 4.8 49.1 1.0 HG2 B:GLU155 4.8 41.9 1.0 HG2 A:GLU155 5.0 63.3 1.0

Calcium binding site 5 out of 11 in the Human Calcium and Integrin Binding Protein 3 E150Q K151H


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 5 of Human Calcium and Integrin Binding Protein 3 E150Q K151H within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca201 b:31.1 occ:1.00 OD1 B:ASN118 2.2 39.7 1.0 O B:TYR122 2.3 34.8 1.0 OD2 B:ASP127 2.3 30.3 1.0 O B:HOH445 2.3 33.9 1.0 OD1 B:ASP116 2.4 29.5 1.0 OD1 B:ASP120 2.4 34.9 1.0 H B:ASP120 3.3 35.4 1.0 CG B:ASP120 3.3 42.0 1.0 CG B:ASN118 3.4 40.4 1.0 H B:TYR122 3.4 34.8 1.0 CG B:ASP127 3.4 32.9 1.0 C B:TYR122 3.5 31.0 1.0 CG B:ASP116 3.5 38.0 1.0 H B:ASN118 3.5 41.8 1.0 HA B:ASP116 3.5 27.9 1.0 HD21 B:ASN118 3.7 47.8 1.0 H B:CYS124 3.7 28.8 1.0 HA B:ILE123 3.8 30.1 1.0 OD2 B:ASP120 3.8 39.4 1.0 HG B:CYS124 3.8 36.5 1.0 OD1 B:ASP127 3.9 32.0 1.0 ND2 B:ASN118 3.9 47.8 1.0 N B:ASP120 4.1 35.4 1.0 N B:TYR122 4.2 34.8 1.0 CA B:ASP116 4.2 27.9 1.0 HB2 B:TYR122 4.3 31.6 1.0 OD2 B:ASP116 4.3 34.0 1.0 N B:ASN118 4.3 41.8 1.0 CB B:ASP116 4.3 31.1 1.0 H B:PHE117 4.3 31.6 1.0 CB B:ASP120 4.3 40.2 1.0 CA B:TYR122 4.4 29.7 1.0 H B:ASN119 4.4 40.3 1.0 C B:ASP116 4.4 34.1 1.0 N B:ILE123 4.4 30.6 1.0 HB3 B:ASP120 4.4 40.2 1.0 N B:CYS124 4.5 28.8 1.0 H B:ASP121 4.5 36.3 1.0 O B:HOH339 4.5 39.6 1.0 CA B:ILE123 4.5 30.1 1.0 N B:PHE117 4.5 31.6 1.0 HB2 B:ASP116 4.5 31.1 1.0 N B:ASN119 4.6 40.3 1.0 CB B:ASN118 4.6 42.6 1.0 CA B:ASP120 4.6 36.4 1.0 HB2 B:ASP127 4.7 30.3 1.0 CB B:ASP127 4.7 30.3 1.0 HB3 B:CYS124 4.7 33.1 1.0 O B:HOH327 4.7 50.2 1.0 C B:ASN118 4.7 43.3 1.0 CA B:ASN118 4.8 39.8 1.0 N B:ASP121 4.8 36.3 1.0 HD22 B:ASN118 4.8 47.8 1.0 C B:ASP120 4.8 36.9 1.0 SG B:CYS124 4.8 36.5 1.0 CB B:TYR122 4.8 31.6 1.0 HB3 B:ASN118 4.9 42.6 1.0 HB3 B:ASP127 4.9 30.3 1.0 O B:ASP116 4.9 33.2 1.0

Calcium binding site 6 out of 11 in the Human Calcium and Integrin Binding Protein 3 E150Q K151H


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 6 of Human Calcium and Integrin Binding Protein 3 E150Q K151H within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca202 b:32.2 occ:1.00 OD1 B:ASP161 2.3 38.6 1.0 OD1 B:ASP157 2.3 29.1 1.0 O B:ARG163 2.3 29.4 1.0 OD1 B:ASP159 2.4 37.9 1.0 O B:HOH336 2.4 35.5 1.0 O B:HOH314 2.5 44.8 1.0 OD2 B:ASP168 2.5 29.2 1.0 CG B:ASP161 3.2 43.3 1.0 H B:ASP159 3.3 36.8 1.0 CG B:ASP157 3.4 36.8 1.0 CG B:ASP159 3.4 51.0 1.0 H B:ASP161 3.5 37.2 1.0 C B:ARG163 3.5 30.1 1.0 H B:SER165 3.5 28.2 1.0 H B:ARG163 3.6 31.9 1.0 CG B:ASP168 3.6 29.4 1.0 HA B:ASP157 3.7 32.2 1.0 HA B:LEU164 3.7 27.7 1.0 OD2 B:ASP161 3.7 39.6 1.0 H B:GLY158 3.9 31.5 1.0 OD2 B:ASP159 3.9 42.2 1.0 N B:ASP159 4.1 36.8 1.0 H B:HIS160 4.1 34.5 1.0 OD1 B:ASP168 4.1 30.6 1.0 OD2 B:ASP157 4.2 32.7 1.0 HG3 B:ARG163 4.2 40.5 1.0 N B:SER165 4.2 28.2 1.0 N B:GLY158 4.2 31.5 1.0 CA B:ASP157 4.2 32.2 1.0 N B:ASP161 4.3 37.2 1.0 O B:HOH398 4.3 40.9 1.0 N B:ARG163 4.3 31.9 1.0 CB B:ASP157 4.3 30.7 1.0 N B:LEU164 4.4 31.4 1.0 CA B:LEU164 4.4 27.7 1.0 C B:ASP157 4.4 28.9 1.0 CB B:ASP161 4.4 37.6 1.0 HB3 B:SER165 4.4 30.3 1.0 HB3 B:ASP161 4.5 37.6 1.0 CA B:ARG163 4.5 30.2 1.0 N B:HIS160 4.5 34.5 1.0 HD23 B:LEU164 4.5 30.8 1.0 HB2 B:ASP157 4.6 30.7 1.0 CB B:ASP159 4.6 50.3 1.0 H B:GLY162 4.6 33.1 1.0 HG2 B:ARG163 4.7 40.5 1.0 C B:LEU164 4.7 33.0 1.0 CA B:ASP159 4.7 37.0 1.0 C B:ASP159 4.8 35.9 1.0 CA B:ASP161 4.8 44.2 1.0 CG B:ARG163 4.8 40.5 1.0 HB2 B:ASP168 4.8 27.4 1.0 CB B:ASP168 4.8 27.4 1.0 OG B:SER165 4.9 29.6 1.0 HD1 B:TYR122 4.9 33.2 1.0 N B:GLY162 5.0 33.1 1.0 CB B:SER165 5.0 30.3 1.0

Calcium binding site 7 out of 11 in the Human Calcium and Integrin Binding Protein 3 E150Q K151H


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 7 of Human Calcium and Integrin Binding Protein 3 E150Q K151H within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca203 b:23.7 occ:1.00 O B:HOH444 2.4 31.1 1.0 OD1 B:ASP36 2.4 23.4 1.0 OXT B:ACT208 2.4 35.5 1.0 O B:ASP36 2.4 23.6 1.0 O B:ACT208 2.5 43.4 1.0 C B:ACT208 2.7 60.3 1.0 C B:ASP36 3.5 22.1 1.0 CG B:ASP36 3.5 25.5 1.0 HD3 B:PRO39 3.7 25.4 1.0 HG3 B:PRO39 3.7 28.2 1.0 HA B:ASP36 3.7 23.3 1.0 CA B:ASP36 4.0 23.3 1.0 CH3 B:ACT208 4.2 50.2 1.0 O B:HOH359 4.2 40.1 1.0 OD2 B:ASP36 4.3 25.3 1.0 CB B:ASP36 4.3 23.1 1.0 CD B:PRO39 4.4 25.4 1.0 O B:HOH452 4.4 44.6 1.0 CG B:PRO39 4.5 28.2 1.0 HA B:LEU37 4.5 24.4 1.0 N B:LEU37 4.5 23.5 1.0 H2 B:ACT208 4.6 50.2 1.0 H3 B:ACT208 4.6 50.2 1.0 H1 B:ACT208 4.7 50.2 1.0 HD2 B:PRO39 4.7 25.4 1.0 HB3 B:ASP36 4.8 23.1 1.0 HB3 B:PRO39 4.8 29.8 1.0 CA B:LEU37 4.9 24.4 1.0 C B:LEU37 5.0 24.9 1.0

Calcium binding site 8 out of 11 in the Human Calcium and Integrin Binding Protein 3 E150Q K151H


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 8 of Human Calcium and Integrin Binding Protein 3 E150Q K151H within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca204 b:31.1 occ:1.00 O B:HOH465 2.3 43.4 1.0 O B:GLN17 2.3 31.0 1.0 O B:THR20 2.4 31.1 1.0 O B:HOH402 2.5 40.8 1.0 O B:HOH413 2.5 32.2 1.0 O B:HOH446 2.6 41.0 1.0 O B:HOH363 2.6 31.9 1.0 O B:ASP18 2.6 36.2 1.0 C B:ASP18 3.3 34.2 1.0 HA B:ASP18 3.3 34.5 1.0 C B:GLN17 3.5 37.5 1.0 HA B:PHE21 3.6 32.0 1.0 C B:THR20 3.6 33.1 1.0 CA B:ASP18 3.7 34.5 1.0 N B:ASP18 4.1 35.4 1.0 N B:CYS19 4.3 32.2 1.0 O B:HOH489 4.3 46.9 1.0 N B:THR20 4.3 35.8 1.0 CA B:PHE21 4.3 32.0 1.0 H B:THR20 4.4 35.8 1.0 N B:PHE21 4.4 27.2 1.0 HG2 B:GLN17 4.5 37.2 1.0 C B:CYS19 4.5 30.6 1.0 O B:HOH469 4.6 54.1 1.0 CA B:THR20 4.6 32.7 1.0 HA B:GLN17 4.6 31.0 1.0 CA B:GLN17 4.7 31.0 1.0 O B:PHE22 4.7 30.3 1.0 HG3 B:GLN17 4.7 37.2 1.0 O B:HOH320 4.7 42.1 1.0 H B:PHE22 4.8 26.4 1.0 C B:PHE21 4.8 34.5 1.0 CA B:CYS19 4.8 32.4 1.0 HA B:CYS19 4.8 32.4 1.0 HG1 B:THR20 4.9 26.7 1.0 H B:CYS19 4.9 32.2 1.0 H B:ASP18 4.9 35.4 1.0 HD1 B:PHE21 4.9 34.0 1.0 O B:CYS19 5.0 32.0 1.0 N B:PHE22 5.0 26.4 1.0

Calcium binding site 9 out of 11 in the Human Calcium and Integrin Binding Protein 3 E150Q K151H


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 9 of Human Calcium and Integrin Binding Protein 3 E150Q K151H within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca205 b:46.0 occ:0.50 O B:HOH426 2.5 36.4 1.0 O B:HOH463 2.5 42.0 1.0 O B:HOH410 2.6 42.3 0.5 OD1 B:ASP154 2.6 50.0 1.0 HA B:ASP154 3.7 30.6 1.0 CG B:ASP154 3.7 44.5 1.0 HB3 B:ASP154 4.2 38.0 1.0 CB B:ASP154 4.3 38.0 1.0 CA B:ASP154 4.4 30.6 1.0 O B:HOH338 4.4 46.5 1.0 OD2 B:ASP154 4.6 47.6 1.0 ND1 B:HIS160 4.7 50.2 1.0 O B:ASP154 4.8 37.7 1.0 O B:HOH322 5.0 48.1 1.0

Calcium binding site 10 out of 11 in the Human Calcium and Integrin Binding Protein 3 E150Q K151H


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 10 of Human Calcium and Integrin Binding Protein 3 E150Q K151H within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca206 b:76.5 occ:1.00 O B:HIS160 2.4 40.5 1.0 O B:HOH464 2.5 52.9 1.0 C B:HIS160 3.7 44.2 1.0 HB3 B:HIS160 3.7 48.5 1.0 HA B:ASP161 3.9 44.2 1.0 HB2 B:HIS160 4.1 48.5 1.0 CB B:HIS160 4.3 48.5 1.0 N B:ASP161 4.6 37.2 1.0 CA B:ASP161 4.6 44.2 1.0 CA B:HIS160 4.6 36.0 1.0

X.Liang, X.Qiu, G.Dionne, C.Cunningham, M.L.Pucak, G.Peng, Y.Kim, A.Lauer, L.Shapiro, U.Mueller. CIB2 and CIB3 Are Auxiliary Subunits of the Mechanotransduction Channel of Hair Cells Neuron 2021.
ISSN: ISSN 0896-6273
DOI: 10.1016/J.NEURON.2021.05.007