Calcium in PDB 6wyf: Crystal Structure of Human H-Chain Ferritin Variant 157C Delta C-Star Modified with A Raft Agent Soaked in An Acrylate Solution
Enzymatic activity of Crystal Structure of Human H-Chain Ferritin Variant 157C Delta C-Star Modified with A Raft Agent Soaked in An Acrylate Solution
All present enzymatic activity of Crystal Structure of Human H-Chain Ferritin Variant 157C Delta C-Star Modified with A Raft Agent Soaked in An Acrylate Solution:
1.16.3.1;
Protein crystallography data
The structure of Crystal Structure of Human H-Chain Ferritin Variant 157C Delta C-Star Modified with A Raft Agent Soaked in An Acrylate Solution, PDB code: 6wyf
was solved by
J.B.Bailey,
L.Zhang,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
36.73 /
1.25
|
Space group
|
F 4 3 2
|
Cell size a, b, c (Å), α, β, γ (°)
|
179.940,
179.940,
179.940,
90.00,
90.00,
90.00
|
R / Rfree (%)
|
11.3 /
13.1
|
Other elements in 6wyf:
The structure of Crystal Structure of Human H-Chain Ferritin Variant 157C Delta C-Star Modified with A Raft Agent Soaked in An Acrylate Solution also contains other interesting chemical elements:
Calcium Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
11;
Binding sites:
The binding sites of Calcium atom in the Crystal Structure of Human H-Chain Ferritin Variant 157C Delta C-Star Modified with A Raft Agent Soaked in An Acrylate Solution
(pdb code 6wyf). This binding sites where shown within
5.0 Angstroms radius around Calcium atom.
In total 11 binding sites of Calcium where determined in the
Crystal Structure of Human H-Chain Ferritin Variant 157C Delta C-Star Modified with A Raft Agent Soaked in An Acrylate Solution, PDB code: 6wyf:
Jump to Calcium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Calcium binding site 1 out
of 11 in 6wyf
Go back to
Calcium Binding Sites List in 6wyf
Calcium binding site 1 out
of 11 in the Crystal Structure of Human H-Chain Ferritin Variant 157C Delta C-Star Modified with A Raft Agent Soaked in An Acrylate Solution
![](/pictures/CA/pdb/wy/6wyf-CA-sphere_01.jpg) Mono view
![](/pictures/CA/pdb/wy/6wyf-CA-sphere_01_stereo.jpg) Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 1 of Crystal Structure of Human H-Chain Ferritin Variant 157C Delta C-Star Modified with A Raft Agent Soaked in An Acrylate Solution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca202
b:10.0
occ:0.30
|
CA
|
A:CA212
|
1.2
|
7.4
|
0.2
|
OD2
|
A:ASP84
|
2.1
|
17.1
|
1.0
|
O
|
A:HOH532
|
2.4
|
17.9
|
0.5
|
OD1
|
A:ASP84
|
2.7
|
11.7
|
1.0
|
CG
|
A:ASP84
|
2.8
|
11.5
|
1.0
|
O
|
A:HOH327
|
4.1
|
30.0
|
0.5
|
CB
|
A:ASP84
|
4.2
|
9.0
|
1.0
|
HB2
|
A:ASP84
|
4.5
|
10.8
|
1.0
|
O
|
A:HOH333
|
4.5
|
13.9
|
1.0
|
HB3
|
A:ASP84
|
4.6
|
10.8
|
1.0
|
H
|
A:ASP84
|
4.9
|
8.9
|
1.0
|
|
Calcium binding site 2 out
of 11 in 6wyf
Go back to
Calcium Binding Sites List in 6wyf
Calcium binding site 2 out
of 11 in the Crystal Structure of Human H-Chain Ferritin Variant 157C Delta C-Star Modified with A Raft Agent Soaked in An Acrylate Solution
![](/pictures/CA/pdb/wy/6wyf-CA-sphere_02.jpg) Mono view
![](/pictures/CA/pdb/wy/6wyf-CA-sphere_02_stereo.jpg) Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 2 of Crystal Structure of Human H-Chain Ferritin Variant 157C Delta C-Star Modified with A Raft Agent Soaked in An Acrylate Solution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca203
b:12.2
occ:0.20
|
HD22
|
A:LEU169
|
3.1
|
14.6
|
1.0
|
NE2
|
A:HIS173
|
3.1
|
14.0
|
0.5
|
NE2
|
A:HIS173
|
3.2
|
16.7
|
0.5
|
HD21
|
A:LEU169
|
3.9
|
14.6
|
1.0
|
CD2
|
A:LEU169
|
3.9
|
12.2
|
1.0
|
HD13
|
A:LEU169
|
4.0
|
15.4
|
1.0
|
CE1
|
A:HIS173
|
4.0
|
11.8
|
0.5
|
CD2
|
A:HIS173
|
4.1
|
12.2
|
0.5
|
CE1
|
A:HIS173
|
4.1
|
16.7
|
0.5
|
HE1
|
A:HIS173
|
4.1
|
14.2
|
0.5
|
HE1
|
A:HIS173
|
4.1
|
20.0
|
0.5
|
HD2
|
A:HIS173
|
4.2
|
14.6
|
0.5
|
CD2
|
A:HIS173
|
4.2
|
15.3
|
0.5
|
HD2
|
A:HIS173
|
4.3
|
18.3
|
0.5
|
HD23
|
A:LEU169
|
4.5
|
14.6
|
1.0
|
CD1
|
A:LEU169
|
4.7
|
12.8
|
1.0
|
HD11
|
A:LEU169
|
4.8
|
15.4
|
1.0
|
CG
|
A:LEU169
|
4.9
|
10.9
|
1.0
|
HB3
|
A:LEU169
|
4.9
|
11.8
|
1.0
|
|
Calcium binding site 3 out
of 11 in 6wyf
Go back to
Calcium Binding Sites List in 6wyf
Calcium binding site 3 out
of 11 in the Crystal Structure of Human H-Chain Ferritin Variant 157C Delta C-Star Modified with A Raft Agent Soaked in An Acrylate Solution
![](/pictures/CA/pdb/wy/6wyf-CA-sphere_03.jpg) Mono view
![](/pictures/CA/pdb/wy/6wyf-CA-sphere_03_stereo.jpg) Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 3 of Crystal Structure of Human H-Chain Ferritin Variant 157C Delta C-Star Modified with A Raft Agent Soaked in An Acrylate Solution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca204
b:22.6
occ:0.65
|
H
|
A:GLN14
|
2.3
|
11.9
|
1.0
|
HG2
|
A:GLN14
|
2.7
|
27.1
|
1.0
|
HA
|
A:HIS13
|
2.9
|
11.1
|
1.0
|
O
|
A:HOH505
|
3.0
|
46.2
|
1.0
|
O
|
A:HOH558
|
3.0
|
41.2
|
1.0
|
O
|
A:HOH553
|
3.0
|
42.4
|
1.0
|
N
|
A:GLN14
|
3.2
|
9.9
|
1.0
|
CG
|
A:GLN14
|
3.4
|
22.6
|
1.0
|
HG3
|
A:GLN14
|
3.5
|
27.1
|
1.0
|
HB2
|
A:GLN14
|
3.6
|
18.3
|
1.0
|
CD2
|
A:HIS13
|
3.7
|
14.1
|
1.0
|
CG
|
A:HIS13
|
3.7
|
11.2
|
1.0
|
CA
|
A:HIS13
|
3.8
|
9.3
|
1.0
|
NE2
|
A:HIS13
|
3.9
|
15.1
|
1.0
|
CB
|
A:GLN14
|
3.9
|
15.3
|
1.0
|
ND1
|
A:HIS13
|
3.9
|
11.4
|
1.0
|
CE1
|
A:HIS13
|
4.0
|
13.6
|
1.0
|
C
|
A:HIS13
|
4.0
|
9.4
|
1.0
|
HD2
|
A:HIS13
|
4.0
|
16.8
|
1.0
|
CA
|
A:GLN14
|
4.1
|
11.0
|
1.0
|
O
|
A:HOH310
|
4.2
|
43.3
|
1.0
|
HE2
|
A:HIS13
|
4.2
|
18.1
|
1.0
|
HE21
|
A:GLN14
|
4.3
|
36.4
|
1.0
|
CB
|
A:HIS13
|
4.3
|
10.6
|
1.0
|
HE1
|
A:HIS13
|
4.4
|
16.3
|
1.0
|
O
|
A:TYR12
|
4.6
|
11.7
|
1.0
|
HA
|
A:GLN14
|
4.6
|
13.1
|
1.0
|
CD
|
A:GLN14
|
4.7
|
26.4
|
1.0
|
H
|
A:ASP15
|
4.8
|
11.8
|
1.0
|
HB2
|
A:HIS13
|
4.8
|
12.7
|
1.0
|
HB3
|
A:GLN14
|
4.8
|
18.3
|
1.0
|
HH21
|
A:ARG9
|
4.8
|
15.8
|
1.0
|
NE2
|
A:GLN14
|
4.8
|
30.4
|
1.0
|
N
|
A:HIS13
|
4.9
|
9.7
|
1.0
|
|
Calcium binding site 4 out
of 11 in 6wyf
Go back to
Calcium Binding Sites List in 6wyf
Calcium binding site 4 out
of 11 in the Crystal Structure of Human H-Chain Ferritin Variant 157C Delta C-Star Modified with A Raft Agent Soaked in An Acrylate Solution
![](/pictures/CA/pdb/wy/6wyf-CA-sphere_04.jpg) Mono view
![](/pictures/CA/pdb/wy/6wyf-CA-sphere_04_stereo.jpg) Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 4 of Crystal Structure of Human H-Chain Ferritin Variant 157C Delta C-Star Modified with A Raft Agent Soaked in An Acrylate Solution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca205
b:13.0
occ:0.17
|
O
|
A:HOH414
|
2.4
|
15.1
|
1.0
|
O
|
A:HOH420
|
2.4
|
23.0
|
1.0
|
O
|
A:HOH602
|
2.4
|
27.5
|
1.0
|
CA
|
A:CA206
|
3.5
|
9.6
|
0.2
|
O
|
A:HOH443
|
4.3
|
12.2
|
1.0
|
O
|
A:HOH389
|
4.4
|
27.2
|
1.0
|
OE2
|
A:GLU90
|
4.4
|
13.4
|
1.0
|
OE1
|
A:GLU90
|
4.5
|
12.2
|
1.0
|
O
|
A:HOH608
|
4.6
|
19.2
|
1.0
|
CD
|
A:GLU90
|
5.0
|
11.8
|
1.0
|
|
Calcium binding site 5 out
of 11 in 6wyf
Go back to
Calcium Binding Sites List in 6wyf
Calcium binding site 5 out
of 11 in the Crystal Structure of Human H-Chain Ferritin Variant 157C Delta C-Star Modified with A Raft Agent Soaked in An Acrylate Solution
![](/pictures/CA/pdb/wy/6wyf-CA-sphere_05.jpg) Mono view
![](/pictures/CA/pdb/wy/6wyf-CA-sphere_05_stereo.jpg) Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 5 of Crystal Structure of Human H-Chain Ferritin Variant 157C Delta C-Star Modified with A Raft Agent Soaked in An Acrylate Solution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca206
b:9.6
occ:0.21
|
O
|
A:HOH443
|
2.3
|
12.2
|
1.0
|
O
|
A:HOH414
|
2.4
|
15.1
|
1.0
|
O
|
A:HOH337
|
2.4
|
11.9
|
1.0
|
CA
|
A:CA205
|
3.5
|
13.0
|
0.2
|
O
|
A:HOH493
|
3.7
|
14.2
|
1.0
|
CA
|
A:CA208
|
3.8
|
10.5
|
0.4
|
O
|
A:ASP89
|
3.9
|
11.9
|
1.0
|
O
|
A:HOH608
|
4.2
|
19.2
|
1.0
|
O
|
A:HOH420
|
4.3
|
23.0
|
1.0
|
OE1
|
A:GLU90
|
4.3
|
12.2
|
1.0
|
O
|
A:HOH568
|
4.5
|
20.1
|
1.0
|
OE2
|
A:GLU90
|
4.5
|
13.4
|
1.0
|
CD
|
A:GLU90
|
4.7
|
11.8
|
1.0
|
HA
|
A:GLU90
|
4.9
|
9.6
|
1.0
|
|
Calcium binding site 6 out
of 11 in 6wyf
Go back to
Calcium Binding Sites List in 6wyf
Calcium binding site 6 out
of 11 in the Crystal Structure of Human H-Chain Ferritin Variant 157C Delta C-Star Modified with A Raft Agent Soaked in An Acrylate Solution
![](/pictures/CA/pdb/wy/6wyf-CA-sphere_06.jpg) Mono view
![](/pictures/CA/pdb/wy/6wyf-CA-sphere_06_stereo.jpg) Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 6 of Crystal Structure of Human H-Chain Ferritin Variant 157C Delta C-Star Modified with A Raft Agent Soaked in An Acrylate Solution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca207
b:18.1
occ:0.75
|
H
|
A:TYR12
|
2.4
|
11.8
|
1.0
|
O
|
A:HOH526
|
2.7
|
46.6
|
1.0
|
HG2
|
A:ARG9
|
2.8
|
14.3
|
1.0
|
H
|
A:ASN11
|
3.1
|
12.3
|
1.0
|
HE
|
A:ARG9
|
3.1
|
18.4
|
1.0
|
O
|
A:HOH541
|
3.1
|
34.8
|
1.0
|
HD3
|
A:ARG9
|
3.2
|
20.0
|
1.0
|
N
|
A:TYR12
|
3.3
|
9.9
|
1.0
|
O
|
A:HOH505
|
3.3
|
46.2
|
1.0
|
N
|
A:ASN11
|
3.4
|
10.3
|
1.0
|
O
|
A:TYR12
|
3.5
|
11.7
|
1.0
|
HA
|
A:GLN10
|
3.5
|
11.9
|
1.0
|
CG
|
A:ARG9
|
3.6
|
12.0
|
1.0
|
CD
|
A:ARG9
|
3.7
|
16.7
|
1.0
|
NE
|
A:ARG9
|
3.7
|
15.4
|
1.0
|
HB3
|
A:TYR12
|
3.8
|
11.8
|
1.0
|
O
|
A:HOH475
|
3.8
|
25.0
|
1.0
|
C
|
A:GLN10
|
3.9
|
9.6
|
1.0
|
CA
|
A:GLN10
|
4.0
|
9.9
|
1.0
|
N
|
A:GLN10
|
4.0
|
9.1
|
1.0
|
HA
|
A:ASN11
|
4.0
|
12.1
|
1.0
|
C
|
A:TYR12
|
4.1
|
9.7
|
1.0
|
O
|
A:HOH558
|
4.1
|
41.2
|
1.0
|
CA
|
A:TYR12
|
4.1
|
9.8
|
1.0
|
CA
|
A:ASN11
|
4.1
|
10.1
|
1.0
|
C
|
A:ASN11
|
4.2
|
9.8
|
1.0
|
H
|
A:GLN10
|
4.2
|
10.9
|
1.0
|
HG3
|
A:ARG9
|
4.3
|
14.3
|
1.0
|
HB3
|
A:ARG9
|
4.3
|
14.2
|
1.0
|
C
|
A:ARG9
|
4.3
|
10.5
|
1.0
|
CB
|
A:TYR12
|
4.4
|
9.9
|
1.0
|
O
|
A:ARG9
|
4.5
|
12.4
|
1.0
|
CB
|
A:ARG9
|
4.5
|
11.8
|
1.0
|
HB2
|
A:TYR12
|
4.6
|
11.8
|
1.0
|
HD2
|
A:ARG9
|
4.6
|
20.0
|
1.0
|
O
|
A:HOH585
|
4.6
|
35.1
|
1.0
|
O
|
A:GLN10
|
4.7
|
9.4
|
1.0
|
CZ
|
A:ARG9
|
4.9
|
13.6
|
1.0
|
HH21
|
A:ARG9
|
5.0
|
15.8
|
1.0
|
CA
|
A:ARG9
|
5.0
|
10.4
|
1.0
|
|
Calcium binding site 7 out
of 11 in 6wyf
Go back to
Calcium Binding Sites List in 6wyf
Calcium binding site 7 out
of 11 in the Crystal Structure of Human H-Chain Ferritin Variant 157C Delta C-Star Modified with A Raft Agent Soaked in An Acrylate Solution
![](/pictures/CA/pdb/wy/6wyf-CA-sphere_07.jpg) Mono view
![](/pictures/CA/pdb/wy/6wyf-CA-sphere_07_stereo.jpg) Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 7 of Crystal Structure of Human H-Chain Ferritin Variant 157C Delta C-Star Modified with A Raft Agent Soaked in An Acrylate Solution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca208
b:10.5
occ:0.38
|
O
|
A:HOH464
|
2.4
|
14.4
|
1.0
|
O
|
A:HOH493
|
2.5
|
14.2
|
1.0
|
O
|
A:HOH337
|
2.5
|
11.9
|
1.0
|
O
|
A:HOH413
|
2.5
|
15.8
|
1.0
|
HA
|
A:ASP89
|
3.8
|
10.9
|
1.0
|
CA
|
A:CA206
|
3.8
|
9.6
|
0.2
|
HE3
|
A:LYS87
|
4.3
|
20.1
|
1.0
|
O
|
A:ASP89
|
4.3
|
11.9
|
1.0
|
O
|
A:HOH443
|
4.4
|
12.2
|
1.0
|
CA
|
A:ASP89
|
4.7
|
9.1
|
1.0
|
O
|
A:HOH416
|
4.7
|
13.3
|
1.0
|
HE2
|
A:LYS87
|
4.7
|
20.1
|
1.0
|
O
|
A:HOH568
|
4.7
|
20.1
|
1.0
|
C
|
A:ASP89
|
4.8
|
9.6
|
1.0
|
OD1
|
A:ASP89
|
4.8
|
12.8
|
1.0
|
O
|
A:HOH435
|
4.9
|
15.6
|
1.0
|
O
|
A:HOH419
|
4.9
|
16.8
|
1.0
|
O
|
A:PRO88
|
4.9
|
8.6
|
1.0
|
CE
|
A:LYS87
|
5.0
|
16.8
|
1.0
|
|
Calcium binding site 8 out
of 11 in 6wyf
Go back to
Calcium Binding Sites List in 6wyf
Calcium binding site 8 out
of 11 in the Crystal Structure of Human H-Chain Ferritin Variant 157C Delta C-Star Modified with A Raft Agent Soaked in An Acrylate Solution
![](/pictures/CA/pdb/wy/6wyf-CA-sphere_08.jpg) Mono view
![](/pictures/CA/pdb/wy/6wyf-CA-sphere_08_stereo.jpg) Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 8 of Crystal Structure of Human H-Chain Ferritin Variant 157C Delta C-Star Modified with A Raft Agent Soaked in An Acrylate Solution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca209
b:20.7
occ:0.59
|
O
|
A:HOH512
|
2.4
|
17.6
|
1.0
|
HD22
|
A:ASN21
|
2.5
|
11.2
|
1.0
|
HA
|
A:ALA18
|
2.7
|
11.4
|
1.0
|
O
|
A:HOH329
|
3.0
|
19.6
|
1.0
|
O
|
A:HOH415
|
3.2
|
14.1
|
1.0
|
HG2
|
A:GLU17
|
3.3
|
12.1
|
1.0
|
ND2
|
A:ASN21
|
3.3
|
9.3
|
1.0
|
HB2
|
A:ALA18
|
3.3
|
12.9
|
1.0
|
CA
|
A:ALA18
|
3.5
|
9.5
|
1.0
|
HD21
|
A:ASN21
|
3.5
|
11.2
|
1.0
|
CB
|
A:ALA18
|
3.8
|
10.7
|
1.0
|
N
|
A:ALA18
|
3.8
|
9.2
|
1.0
|
HD2
|
A:PHE81
|
3.8
|
15.1
|
1.0
|
HB1
|
A:ALA18
|
4.0
|
12.9
|
1.0
|
HB2
|
A:ASN21
|
4.0
|
9.5
|
1.0
|
H
|
A:ALA18
|
4.2
|
11.0
|
1.0
|
CG
|
A:GLU17
|
4.2
|
10.1
|
1.0
|
C
|
A:GLU17
|
4.2
|
8.3
|
1.0
|
O
|
A:GLU17
|
4.2
|
8.8
|
1.0
|
O
|
A:HOH624
|
4.3
|
53.8
|
1.0
|
O
|
A:HOH304
|
4.4
|
20.7
|
1.0
|
CG
|
A:ASN21
|
4.4
|
8.4
|
1.0
|
O
|
A:HOH427
|
4.6
|
27.1
|
1.0
|
CD
|
A:GLU17
|
4.6
|
11.0
|
1.0
|
HB3
|
A:GLU17
|
4.6
|
11.2
|
1.0
|
CD2
|
A:PHE81
|
4.6
|
12.6
|
1.0
|
HB2
|
A:PHE81
|
4.6
|
11.7
|
1.0
|
O
|
A:HOH492
|
4.6
|
44.9
|
1.0
|
CB
|
A:ASN21
|
4.7
|
7.9
|
1.0
|
HB3
|
A:ALA18
|
4.7
|
12.9
|
1.0
|
OE2
|
A:GLU17
|
4.7
|
11.6
|
1.0
|
C
|
A:ALA18
|
4.8
|
9.1
|
1.0
|
HG3
|
A:GLU17
|
4.8
|
12.1
|
1.0
|
O
|
A:HOH563
|
4.8
|
29.1
|
1.0
|
CB
|
A:GLU17
|
4.9
|
9.4
|
1.0
|
O
|
A:ARG79
|
4.9
|
9.9
|
1.0
|
HB3
|
A:ASN21
|
5.0
|
9.5
|
1.0
|
O
|
A:ALA18
|
5.0
|
9.6
|
1.0
|
|
Calcium binding site 9 out
of 11 in 6wyf
Go back to
Calcium Binding Sites List in 6wyf
Calcium binding site 9 out
of 11 in the Crystal Structure of Human H-Chain Ferritin Variant 157C Delta C-Star Modified with A Raft Agent Soaked in An Acrylate Solution
![](/pictures/CA/pdb/wy/6wyf-CA-sphere_09.jpg) Mono view
![](/pictures/CA/pdb/wy/6wyf-CA-sphere_09_stereo.jpg) Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 9 of Crystal Structure of Human H-Chain Ferritin Variant 157C Delta C-Star Modified with A Raft Agent Soaked in An Acrylate Solution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca210
b:25.6
occ:0.33
|
O
|
A:HOH322
|
1.9
|
22.0
|
0.3
|
OE2
|
A:GLU134
|
2.1
|
20.4
|
0.4
|
OE1
|
A:GLU134
|
2.3
|
22.4
|
0.6
|
OD1
|
A:ASP131
|
2.7
|
25.6
|
1.0
|
CD
|
A:GLU134
|
3.1
|
22.8
|
0.4
|
O
|
A:HOH364
|
3.5
|
13.8
|
1.0
|
HG3
|
A:GLU134
|
3.5
|
25.7
|
0.4
|
CD
|
A:GLU134
|
3.5
|
22.0
|
0.6
|
CG
|
A:ASP131
|
3.8
|
21.8
|
1.0
|
CG
|
A:GLU134
|
3.8
|
21.4
|
0.4
|
OE1
|
A:GLU134
|
3.9
|
22.9
|
0.4
|
OE2
|
A:GLU134
|
4.0
|
23.3
|
0.6
|
HA
|
A:ASP131
|
4.1
|
16.9
|
1.0
|
HG2
|
A:GLU134
|
4.2
|
25.7
|
0.4
|
HB2
|
A:ASP131
|
4.3
|
21.1
|
1.0
|
HB2
|
A:GLU134
|
4.3
|
25.1
|
0.6
|
CB
|
A:ASP131
|
4.5
|
17.6
|
1.0
|
HB3
|
A:GLU134
|
4.5
|
25.1
|
0.6
|
OD2
|
A:ASP131
|
4.6
|
22.7
|
1.0
|
CG
|
A:GLU134
|
4.7
|
20.1
|
0.6
|
CB
|
A:GLU134
|
4.8
|
20.9
|
0.6
|
CA
|
A:ASP131
|
4.8
|
14.1
|
1.0
|
|
Calcium binding site 10 out
of 11 in 6wyf
Go back to
Calcium Binding Sites List in 6wyf
Calcium binding site 10 out
of 11 in the Crystal Structure of Human H-Chain Ferritin Variant 157C Delta C-Star Modified with A Raft Agent Soaked in An Acrylate Solution
![](/pictures/CA/pdb/wy/6wyf-CA-sphere_10.jpg) Mono view
![](/pictures/CA/pdb/wy/6wyf-CA-sphere_10_stereo.jpg) Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 10 of Crystal Structure of Human H-Chain Ferritin Variant 157C Delta C-Star Modified with A Raft Agent Soaked in An Acrylate Solution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca211
b:31.6
occ:0.68
|
O
|
A:HOH533
|
2.7
|
22.4
|
1.0
|
HG3
|
A:GLN83
|
2.9
|
15.1
|
1.0
|
HA
|
A:ARG22
|
3.2
|
9.9
|
0.7
|
HA
|
A:ARG22
|
3.2
|
11.2
|
0.3
|
HB3
|
A:ASN25
|
3.3
|
9.9
|
1.0
|
HG2
|
A:ARG22
|
3.4
|
16.1
|
0.7
|
HB2
|
A:ASN25
|
3.4
|
9.9
|
1.0
|
HB2
|
A:GLN83
|
3.5
|
12.2
|
1.0
|
HG3
|
A:ARG22
|
3.6
|
19.2
|
0.3
|
CB
|
A:ASN25
|
3.7
|
8.3
|
1.0
|
CG
|
A:GLN83
|
3.7
|
12.6
|
1.0
|
O
|
A:HOH392
|
3.8
|
25.1
|
1.0
|
HG2
|
A:GLN83
|
3.8
|
15.1
|
1.0
|
CG
|
A:ASN25
|
3.9
|
7.8
|
1.0
|
CB
|
A:GLN83
|
4.0
|
10.2
|
1.0
|
OD1
|
A:ASN25
|
4.0
|
9.4
|
1.0
|
CA
|
A:ARG22
|
4.1
|
8.3
|
0.7
|
CA
|
A:ARG22
|
4.1
|
9.4
|
0.3
|
HB3
|
A:GLN83
|
4.2
|
12.2
|
1.0
|
CG
|
A:ARG22
|
4.3
|
13.5
|
0.7
|
CG
|
A:ARG22
|
4.5
|
16.0
|
0.3
|
HB2
|
A:ARG22
|
4.5
|
15.1
|
0.3
|
HB3
|
A:ARG22
|
4.5
|
12.0
|
0.7
|
CB
|
A:ARG22
|
4.6
|
10.0
|
0.7
|
ND2
|
A:ASN25
|
4.6
|
8.9
|
1.0
|
CB
|
A:ARG22
|
4.6
|
12.6
|
0.3
|
O
|
A:ASN21
|
4.7
|
8.5
|
1.0
|
O
|
A:ARG22
|
4.7
|
8.7
|
1.0
|
HG3
|
A:ARG22
|
4.8
|
16.1
|
0.7
|
HD22
|
A:ASN25
|
4.8
|
10.6
|
1.0
|
HG2
|
A:ARG22
|
4.9
|
19.2
|
0.3
|
O
|
A:HOH403
|
4.9
|
14.1
|
1.0
|
N
|
A:ARG22
|
4.9
|
8.3
|
1.0
|
C
|
A:ARG22
|
4.9
|
7.7
|
1.0
|
HD2
|
A:ARG22
|
5.0
|
20.4
|
0.7
|
|
Reference:
K.Han,
J.B.Bailey,
L.Zhang,
F.A.Tezcan.
Anisotropic Dynamics and Mechanics of Macromolecular Crystals Containing Lattice-Patterned Polymer Networks. J.Am.Chem.Soc. V. 142 19402 2020.
ISSN: ESSN 1520-5126
PubMed: 33124805
DOI: 10.1021/JACS.0C10065
Page generated: Tue Jul 16 17:36:19 2024
|