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Calcium in PDB 6x0o: Single-Particle Cryo-Em Structure of Arabinosyltransferaseembb From Mycobacterium Smegmatis

Enzymatic activity of Single-Particle Cryo-Em Structure of Arabinosyltransferaseembb From Mycobacterium Smegmatis

All present enzymatic activity of Single-Particle Cryo-Em Structure of Arabinosyltransferaseembb From Mycobacterium Smegmatis:
2.4.2.34;

Calcium Binding Sites:

The binding sites of Calcium atom in the Single-Particle Cryo-Em Structure of Arabinosyltransferaseembb From Mycobacterium Smegmatis (pdb code 6x0o). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Single-Particle Cryo-Em Structure of Arabinosyltransferaseembb From Mycobacterium Smegmatis, PDB code: 6x0o:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in 6x0o

Go back to Calcium Binding Sites List in 6x0o
Calcium binding site 1 out of 2 in the Single-Particle Cryo-Em Structure of Arabinosyltransferaseembb From Mycobacterium Smegmatis


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Single-Particle Cryo-Em Structure of Arabinosyltransferaseembb From Mycobacterium Smegmatis within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca1101

b:36.0
occ:1.00
O A:GLY300 2.2 36.8 1.0
O5 A:LHG1103 2.2 43.0 1.0
OD2 A:ASP482 2.3 39.6 1.0
O A:THR216 2.3 37.5 1.0
OD1 A:ASP482 2.4 39.6 1.0
H A:THR216 2.5 37.5 1.0
CG A:ASP482 2.7 39.6 1.0
C A:GLY300 3.3 36.8 1.0
N A:THR216 3.4 37.5 1.0
C A:THR216 3.4 37.5 1.0
P A:LHG1103 3.5 43.0 1.0
HA A:THR215 3.6 36.6 1.0
HB3 A:TYR301 3.7 36.9 1.0
HA3 A:GLY300 3.8 36.8 1.0
CA A:THR216 4.0 37.5 1.0
CA A:GLY300 4.0 36.8 1.0
HA2 A:GLY300 4.0 36.8 1.0
CB A:ASP482 4.2 39.6 1.0
HC42 A:LHG1103 4.2 43.0 1.0
O3 A:LHG1103 4.2 43.0 1.0
HA A:HIS217 4.3 37.5 1.0
OG1 A:THR216 4.3 37.5 1.0
C A:THR215 4.4 36.6 1.0
HA A:TYR301 4.4 36.9 1.0
O4 A:LHG1103 4.4 43.0 1.0
N A:TYR301 4.4 36.9 1.0
CA A:THR215 4.4 36.6 1.0
HB3 A:ASP482 4.4 39.6 1.0
N A:HIS217 4.5 37.5 1.0
CB A:TYR301 4.5 36.9 1.0
O A:PHE214 4.6 36.4 1.0
HC32 A:LHG1103 4.6 43.0 1.0
HB2 A:ASP482 4.6 39.6 1.0
HB3 A:HIS217 4.6 37.5 1.0
OG1 A:THR215 4.7 36.6 1.0
CA A:TYR301 4.7 36.9 1.0
O A:ASP482 4.7 39.6 1.0
O6 A:LHG1103 4.7 43.0 1.0
HA A:THR216 4.8 37.5 1.0
CB A:THR216 4.8 37.5 1.0
HA A:ASP482 4.8 39.6 1.0
HD1 A:TYR301 4.8 36.9 1.0
CA A:HIS217 4.8 37.5 1.0
C4 A:LHG1103 4.9 43.0 1.0
HC2 A:LHG1103 4.9 43.0 1.0
C3 A:LHG1103 5.0 43.0 1.0
HG1 A:THR216 5.0 37.5 1.0

Calcium binding site 2 out of 2 in 6x0o

Go back to Calcium Binding Sites List in 6x0o
Calcium binding site 2 out of 2 in the Single-Particle Cryo-Em Structure of Arabinosyltransferaseembb From Mycobacterium Smegmatis


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Single-Particle Cryo-Em Structure of Arabinosyltransferaseembb From Mycobacterium Smegmatis within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca1102

b:41.1
occ:1.00
OD2 A:ASP936 2.3 45.8 1.0
O A:ASP943 2.4 44.4 1.0
O A:SER938 2.4 45.3 1.0
CG A:ASP936 3.5 45.8 1.0
C A:SER938 3.6 45.3 1.0
C A:ASP943 3.6 44.4 1.0
O A:SER940 3.6 46.5 1.0
HB3 A:SER938 3.7 45.3 1.0
HA A:TRP944 3.8 42.2 1.0
HB2 A:ASP943 3.8 44.4 1.0
OD1 A:ASP936 3.9 45.8 1.0
HG23 A:THR828 4.0 44.4 1.0
HA A:LEU939 4.1 47.3 1.0
H A:SER938 4.1 45.3 1.0
OE1 A:GLN834 4.4 49.0 1.0
CB A:SER938 4.4 45.3 1.0
CA A:SER938 4.4 45.3 1.0
CB A:ASP943 4.4 44.4 1.0
HB3 A:ASP943 4.4 44.4 1.0
H A:ASP943 4.5 44.4 1.0
N A:TRP944 4.5 42.2 1.0
CA A:ASP943 4.5 44.4 1.0
N A:LEU939 4.5 47.3 1.0
CA A:TRP944 4.5 42.2 1.0
H A:SER940 4.6 46.5 1.0
CA A:LEU939 4.6 47.3 1.0
HB3 A:ASP936 4.7 45.8 1.0
N A:SER938 4.7 45.3 1.0
C A:SER940 4.7 46.5 1.0
HB3 A:TRP944 4.7 42.2 1.0
N A:SER940 4.7 46.5 1.0
CB A:ASP936 4.7 45.8 1.0
OG A:SER938 4.7 45.3 1.0
HB3 A:GLN834 4.8 49.0 1.0
HG21 A:THR828 4.8 44.4 1.0
C A:LEU939 4.8 47.3 1.0
CG2 A:THR828 4.8 44.4 1.0
N A:ASP943 4.8 44.4 1.0
CD A:GLN834 4.9 49.0 1.0

Reference:

Y.Z.Tan, J.Rodrigues, J.E.Keener, R.B.Zheng, R.Brunton, B.Kloss, S.I.Giacometti, A.L.Rosario, L.Zhang, M.Niederweis, O.B.Clarke, T.L.Lowary, M.T.Marty, M.Archer, C.S.Potter, B.Carragher, F.Mancia. Single-Particle Cryo-Em Structure of Arabinosyltransferaseembb From Mycobacterium Smegmatis To Be Published.
Page generated: Wed Jul 9 19:44:36 2025

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