Calcium in PDB 6x0o: Single-Particle Cryo-Em Structure of Arabinosyltransferaseembb From Mycobacterium Smegmatis

All present enzymatic activity of Single-Particle Cryo-Em Structure of Arabinosyltransferaseembb From Mycobacterium Smegmatis:
2.4.2.34;

The binding sites of Calcium atom in the Single-Particle Cryo-Em Structure of Arabinosyltransferaseembb From Mycobacterium Smegmatis (pdb code 6x0o). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Single-Particle Cryo-Em Structure of Arabinosyltransferaseembb From Mycobacterium Smegmatis, PDB code: 6x0o:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in the Single-Particle Cryo-Em Structure of Arabinosyltransferaseembb From Mycobacterium Smegmatis


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Single-Particle Cryo-Em Structure of Arabinosyltransferaseembb From Mycobacterium Smegmatis within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca1101 b:36.0 occ:1.00 O A:GLY300 2.2 36.8 1.0 O5 A:LHG1103 2.2 43.0 1.0 OD2 A:ASP482 2.3 39.6 1.0 O A:THR216 2.3 37.5 1.0 OD1 A:ASP482 2.4 39.6 1.0 H A:THR216 2.5 37.5 1.0 CG A:ASP482 2.7 39.6 1.0 C A:GLY300 3.3 36.8 1.0 N A:THR216 3.4 37.5 1.0 C A:THR216 3.4 37.5 1.0 P A:LHG1103 3.5 43.0 1.0 HA A:THR215 3.6 36.6 1.0 HB3 A:TYR301 3.7 36.9 1.0 HA3 A:GLY300 3.8 36.8 1.0 CA A:THR216 4.0 37.5 1.0 CA A:GLY300 4.0 36.8 1.0 HA2 A:GLY300 4.0 36.8 1.0 CB A:ASP482 4.2 39.6 1.0 HC42 A:LHG1103 4.2 43.0 1.0 O3 A:LHG1103 4.2 43.0 1.0 HA A:HIS217 4.3 37.5 1.0 OG1 A:THR216 4.3 37.5 1.0 C A:THR215 4.4 36.6 1.0 HA A:TYR301 4.4 36.9 1.0 O4 A:LHG1103 4.4 43.0 1.0 N A:TYR301 4.4 36.9 1.0 CA A:THR215 4.4 36.6 1.0 HB3 A:ASP482 4.4 39.6 1.0 N A:HIS217 4.5 37.5 1.0 CB A:TYR301 4.5 36.9 1.0 O A:PHE214 4.6 36.4 1.0 HC32 A:LHG1103 4.6 43.0 1.0 HB2 A:ASP482 4.6 39.6 1.0 HB3 A:HIS217 4.6 37.5 1.0 OG1 A:THR215 4.7 36.6 1.0 CA A:TYR301 4.7 36.9 1.0 O A:ASP482 4.7 39.6 1.0 O6 A:LHG1103 4.7 43.0 1.0 HA A:THR216 4.8 37.5 1.0 CB A:THR216 4.8 37.5 1.0 HA A:ASP482 4.8 39.6 1.0 HD1 A:TYR301 4.8 36.9 1.0 CA A:HIS217 4.8 37.5 1.0 C4 A:LHG1103 4.9 43.0 1.0 HC2 A:LHG1103 4.9 43.0 1.0 C3 A:LHG1103 5.0 43.0 1.0 HG1 A:THR216 5.0 37.5 1.0

Calcium binding site 2 out of 2 in the Single-Particle Cryo-Em Structure of Arabinosyltransferaseembb From Mycobacterium Smegmatis


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Single-Particle Cryo-Em Structure of Arabinosyltransferaseembb From Mycobacterium Smegmatis within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca1102 b:41.1 occ:1.00 OD2 A:ASP936 2.3 45.8 1.0 O A:ASP943 2.4 44.4 1.0 O A:SER938 2.4 45.3 1.0 CG A:ASP936 3.5 45.8 1.0 C A:SER938 3.6 45.3 1.0 C A:ASP943 3.6 44.4 1.0 O A:SER940 3.6 46.5 1.0 HB3 A:SER938 3.7 45.3 1.0 HA A:TRP944 3.8 42.2 1.0 HB2 A:ASP943 3.8 44.4 1.0 OD1 A:ASP936 3.9 45.8 1.0 HG23 A:THR828 4.0 44.4 1.0 HA A:LEU939 4.1 47.3 1.0 H A:SER938 4.1 45.3 1.0 OE1 A:GLN834 4.4 49.0 1.0 CB A:SER938 4.4 45.3 1.0 CA A:SER938 4.4 45.3 1.0 CB A:ASP943 4.4 44.4 1.0 HB3 A:ASP943 4.4 44.4 1.0 H A:ASP943 4.5 44.4 1.0 N A:TRP944 4.5 42.2 1.0 CA A:ASP943 4.5 44.4 1.0 N A:LEU939 4.5 47.3 1.0 CA A:TRP944 4.5 42.2 1.0 H A:SER940 4.6 46.5 1.0 CA A:LEU939 4.6 47.3 1.0 HB3 A:ASP936 4.7 45.8 1.0 N A:SER938 4.7 45.3 1.0 C A:SER940 4.7 46.5 1.0 HB3 A:TRP944 4.7 42.2 1.0 N A:SER940 4.7 46.5 1.0 CB A:ASP936 4.7 45.8 1.0 OG A:SER938 4.7 45.3 1.0 HB3 A:GLN834 4.8 49.0 1.0 HG21 A:THR828 4.8 44.4 1.0 C A:LEU939 4.8 47.3 1.0 CG2 A:THR828 4.8 44.4 1.0 N A:ASP943 4.8 44.4 1.0 CD A:GLN834 4.9 49.0 1.0

Y.Z.Tan, J.Rodrigues, J.E.Keener, R.B.Zheng, R.Brunton, B.Kloss, S.I.Giacometti, A.L.Rosario, L.Zhang, M.Niederweis, O.B.Clarke, T.L.Lowary, M.T.Marty, M.Archer, C.S.Potter, B.Carragher, F.Mancia. Single-Particle Cryo-Em Structure of Arabinosyltransferaseembb From Mycobacterium Smegmatis To Be Published.