Calcium in PDB 6xu4: Crystal Structure of the Genetically-Encoded Fgcamp Calcium Indicator in Its Calcium-Bound State
Protein crystallography data
The structure of Crystal Structure of the Genetically-Encoded Fgcamp Calcium Indicator in Its Calcium-Bound State, PDB code: 6xu4
was solved by
K.M.Boyko,
A.Y.Nikolaeva,
D.A.Korzhenevskiy,
N.V.Barykina,
O.M.Subach,
F.V.Subach,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
|
Resolution Low / High (Å)
|
89.94 /
3.18
|
|
Space group
|
P 43 21 2
|
|
Cell size a, b, c (Å), α, β, γ (°)
|
163.561,
163.561,
143.060,
90.00,
90.00,
90.00
|
|
R / Rfree (%)
|
27.9 /
34.8
|
Calcium Binding Sites:
The binding sites of Calcium atom in the Crystal Structure of the Genetically-Encoded Fgcamp Calcium Indicator in Its Calcium-Bound State
(pdb code 6xu4). This binding sites where shown within
5.0 Angstroms radius around Calcium atom.
In total 10 binding sites of Calcium where determined in the
Crystal Structure of the Genetically-Encoded Fgcamp Calcium Indicator in Its Calcium-Bound State, PDB code: 6xu4:
Jump to Calcium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Calcium binding site 1 out
of 10 in 6xu4
Go back to
Calcium Binding Sites List in 6xu4
Calcium binding site 1 out
of 10 in the Crystal Structure of the Genetically-Encoded Fgcamp Calcium Indicator in Its Calcium-Bound State
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 1 of Crystal Structure of the Genetically-Encoded Fgcamp Calcium Indicator in Its Calcium-Bound State within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca501
b:85.0
occ:1.00
|
OD1
|
A:ASN327
|
2.3
|
75.2
|
1.0
|
|
OD1
|
A:ASP323
|
2.3
|
73.3
|
1.0
|
|
O
|
A:THR329
|
2.3
|
73.3
|
1.0
|
|
OE2
|
A:GLU334
|
2.3
|
87.2
|
1.0
|
|
OE1
|
A:GLU334
|
2.3
|
98.8
|
1.0
|
|
OD1
|
A:ASP325
|
2.3
|
70.6
|
1.0
|
|
CD
|
A:GLU334
|
2.6
|
89.6
|
1.0
|
|
CG
|
A:ASP325
|
3.4
|
63.6
|
1.0
|
|
CG
|
A:ASN327
|
3.5
|
81.3
|
1.0
|
|
CG
|
A:ASP323
|
3.5
|
74.8
|
1.0
|
|
C
|
A:THR329
|
3.6
|
73.6
|
1.0
|
|
OD2
|
A:ASP331
|
3.6
|
80.0
|
1.0
|
|
OD2
|
A:ASP325
|
3.8
|
60.5
|
1.0
|
|
ND2
|
A:ASN327
|
4.1
|
89.7
|
1.0
|
|
CG
|
A:GLU334
|
4.2
|
83.8
|
1.0
|
|
CA
|
A:ASP323
|
4.2
|
76.4
|
1.0
|
|
CB
|
A:ASP323
|
4.3
|
73.8
|
1.0
|
|
N
|
A:ASP331
|
4.4
|
66.8
|
1.0
|
|
OG1
|
A:THR329
|
4.4
|
81.1
|
1.0
|
|
N
|
A:THR329
|
4.4
|
69.4
|
1.0
|
|
CG
|
A:ASP331
|
4.4
|
68.6
|
1.0
|
|
N
|
A:ILE330
|
4.4
|
66.0
|
1.0
|
|
N
|
A:ASN327
|
4.4
|
66.5
|
1.0
|
|
OD2
|
A:ASP323
|
4.5
|
71.5
|
1.0
|
|
CA
|
A:ILE330
|
4.5
|
64.7
|
1.0
|
|
CA
|
A:THR329
|
4.5
|
74.6
|
1.0
|
|
N
|
A:ASP325
|
4.6
|
69.3
|
1.0
|
|
CB
|
A:ASN327
|
4.6
|
78.9
|
1.0
|
|
C
|
A:ASP323
|
4.6
|
75.5
|
1.0
|
|
CB
|
A:ASP325
|
4.6
|
70.8
|
1.0
|
|
OE1
|
A:GLN293
|
4.7
|
75.9
|
1.0
|
|
N
|
A:ALA324
|
4.8
|
76.6
|
1.0
|
|
C
|
A:ILE330
|
4.8
|
70.9
|
1.0
|
|
CA
|
A:ASN327
|
4.8
|
70.0
|
1.0
|
|
C
|
A:ASN327
|
4.9
|
68.9
|
1.0
|
|
N
|
A:ASN326
|
4.9
|
76.3
|
1.0
|
|
CA
|
A:ASP325
|
5.0
|
68.7
|
1.0
|
|
N
|
A:GLY328
|
5.0
|
65.0
|
1.0
|
|
Calcium binding site 2 out
of 10 in 6xu4
Go back to
Calcium Binding Sites List in 6xu4
Calcium binding site 2 out
of 10 in the Crystal Structure of the Genetically-Encoded Fgcamp Calcium Indicator in Its Calcium-Bound State
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 2 of Crystal Structure of the Genetically-Encoded Fgcamp Calcium Indicator in Its Calcium-Bound State within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca502
b:79.0
occ:1.00
|
O
|
A:PHE366
|
2.3
|
60.1
|
1.0
|
|
OD1
|
A:ASP362
|
2.3
|
0.6
|
1.0
|
|
OD1
|
A:ASN364
|
2.3
|
79.1
|
1.0
|
|
OD1
|
A:ASP360
|
2.3
|
67.2
|
1.0
|
|
OE2
|
A:GLU371
|
2.3
|
82.3
|
1.0
|
|
OE1
|
A:GLU371
|
2.3
|
79.9
|
1.0
|
|
OD2
|
A:ASP362
|
2.3
|
89.7
|
1.0
|
|
CG
|
A:ASP362
|
2.5
|
91.0
|
1.0
|
|
CD
|
A:GLU371
|
2.6
|
75.4
|
1.0
|
|
CG
|
A:ASN364
|
3.2
|
81.8
|
1.0
|
|
CG
|
A:ASP360
|
3.5
|
71.3
|
1.0
|
|
C
|
A:PHE366
|
3.5
|
64.3
|
1.0
|
|
CB
|
A:ASP362
|
3.8
|
88.4
|
1.0
|
|
ND2
|
A:ASN364
|
3.8
|
87.6
|
1.0
|
|
CG
|
A:GLU371
|
4.1
|
74.0
|
1.0
|
|
N
|
A:ASP362
|
4.1
|
81.8
|
1.0
|
|
CA
|
A:ASP360
|
4.2
|
63.5
|
1.0
|
|
CB
|
A:ASN364
|
4.3
|
87.8
|
1.0
|
|
CB
|
A:ASP360
|
4.3
|
67.0
|
1.0
|
|
C
|
A:ASP360
|
4.4
|
63.3
|
1.0
|
|
N
|
A:ILE367
|
4.4
|
76.8
|
1.0
|
|
N
|
A:ASN364
|
4.4
|
82.8
|
1.0
|
|
CA
|
A:ILE367
|
4.4
|
80.1
|
1.0
|
|
CA
|
A:ASP362
|
4.4
|
88.2
|
1.0
|
|
OD2
|
A:ASP360
|
4.4
|
60.9
|
1.0
|
|
N
|
A:ASN363
|
4.4
|
79.3
|
1.0
|
|
N
|
A:SER368
|
4.4
|
77.2
|
1.0
|
|
N
|
A:PHE366
|
4.5
|
73.3
|
1.0
|
|
CA
|
A:PHE366
|
4.5
|
71.9
|
1.0
|
|
N
|
A:ARG361
|
4.6
|
65.3
|
1.0
|
|
OG
|
A:SER368
|
4.7
|
86.5
|
1.0
|
|
O
|
A:ASP360
|
4.8
|
67.7
|
1.0
|
|
C
|
A:ASP362
|
4.8
|
84.8
|
1.0
|
|
C
|
A:ILE367
|
4.9
|
77.7
|
1.0
|
|
CA
|
A:ASN364
|
4.9
|
83.6
|
1.0
|
|
CB
|
A:PHE366
|
4.9
|
80.0
|
1.0
|
|
CB
|
A:GLU371
|
5.0
|
74.8
|
1.0
|
|
Calcium binding site 3 out
of 10 in 6xu4
Go back to
Calcium Binding Sites List in 6xu4
Calcium binding site 3 out
of 10 in the Crystal Structure of the Genetically-Encoded Fgcamp Calcium Indicator in Its Calcium-Bound State
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 3 of Crystal Structure of the Genetically-Encoded Fgcamp Calcium Indicator in Its Calcium-Bound State within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca503
b:76.1
occ:1.00
|
OE1
|
A:GLU298
|
2.3
|
83.9
|
1.0
|
|
OE2
|
A:GLU298
|
2.3
|
70.5
|
1.0
|
|
O
|
A:GLN293
|
2.3
|
79.5
|
1.0
|
|
OD1
|
A:ASP289
|
2.3
|
0.5
|
1.0
|
|
OD1
|
A:ASP287
|
2.4
|
60.0
|
1.0
|
|
OD2
|
A:ASP289
|
2.4
|
99.3
|
1.0
|
|
OD1
|
A:ASP291
|
2.4
|
0.2
|
1.0
|
|
OD2
|
A:ASP291
|
2.4
|
93.5
|
1.0
|
|
CD
|
A:GLU298
|
2.6
|
76.6
|
1.0
|
|
CG
|
A:ASP289
|
2.7
|
86.6
|
1.0
|
|
CG
|
A:ASP291
|
2.7
|
84.9
|
1.0
|
|
C
|
A:GLN293
|
3.6
|
82.7
|
1.0
|
|
CG
|
A:ASP287
|
3.6
|
72.4
|
1.0
|
|
CB
|
A:ASP291
|
4.0
|
71.7
|
1.0
|
|
CG
|
A:GLU298
|
4.1
|
75.9
|
1.0
|
|
CB
|
A:ASP289
|
4.1
|
67.7
|
1.0
|
|
N
|
A:ASP291
|
4.2
|
70.0
|
1.0
|
|
N
|
A:GLN293
|
4.3
|
68.9
|
1.0
|
|
CA
|
A:GLN293
|
4.4
|
80.2
|
1.0
|
|
CA
|
A:ASP287
|
4.4
|
68.8
|
1.0
|
|
CB
|
A:ASP287
|
4.5
|
69.9
|
1.0
|
|
OD2
|
A:ASP287
|
4.5
|
60.8
|
1.0
|
|
CG2
|
A:THR295
|
4.5
|
83.1
|
1.0
|
|
CB
|
A:GLN293
|
4.5
|
76.2
|
1.0
|
|
N
|
A:ILE294
|
4.6
|
76.7
|
1.0
|
|
N
|
A:GLY290
|
4.6
|
72.1
|
1.0
|
|
N
|
A:ASP289
|
4.6
|
70.6
|
1.0
|
|
CA
|
A:ASP291
|
4.6
|
72.6
|
1.0
|
|
C
|
A:ASP287
|
4.7
|
69.7
|
1.0
|
|
CA
|
A:ASP289
|
4.8
|
65.9
|
1.0
|
|
CA
|
A:ILE294
|
4.8
|
77.0
|
1.0
|
|
N
|
A:THR295
|
4.9
|
72.6
|
1.0
|
|
C
|
A:ASP289
|
5.0
|
68.7
|
1.0
|
|
Calcium binding site 4 out
of 10 in 6xu4
Go back to
Calcium Binding Sites List in 6xu4
Calcium binding site 4 out
of 10 in the Crystal Structure of the Genetically-Encoded Fgcamp Calcium Indicator in Its Calcium-Bound State
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 4 of Crystal Structure of the Genetically-Encoded Fgcamp Calcium Indicator in Its Calcium-Bound State within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca504
b:0.4
occ:1.00
|
OD1
|
A:ASP398
|
2.3
|
0.2
|
1.0
|
|
OD1
|
A:ASP400
|
2.3
|
0.9
|
1.0
|
|
OE2
|
A:GLU407
|
2.3
|
80.5
|
1.0
|
|
OE1
|
A:GLU407
|
2.3
|
94.5
|
1.0
|
|
OD1
|
A:ASP396
|
2.3
|
0.8
|
1.0
|
|
O
|
A:ARG402
|
2.4
|
85.9
|
1.0
|
|
OD2
|
A:ASP398
|
2.4
|
0.4
|
1.0
|
|
OD2
|
A:ASP400
|
2.4
|
0.7
|
1.0
|
|
CG
|
A:ASP398
|
2.6
|
0.5
|
1.0
|
|
CG
|
A:ASP400
|
2.6
|
99.9
|
1.0
|
|
CD
|
A:GLU407
|
2.7
|
80.0
|
1.0
|
|
CG
|
A:ASP396
|
3.5
|
0.0
|
1.0
|
|
C
|
A:ARG402
|
3.6
|
80.5
|
1.0
|
|
CB
|
A:ASP398
|
4.0
|
0.9
|
1.0
|
|
CB
|
A:ASP400
|
4.1
|
85.7
|
1.0
|
|
CG
|
A:GLU407
|
4.2
|
79.4
|
1.0
|
|
OD2
|
A:ASP404
|
4.3
|
78.8
|
1.0
|
|
OD2
|
A:ASP396
|
4.3
|
92.5
|
1.0
|
|
N
|
A:ASP398
|
4.3
|
0.2
|
1.0
|
|
N
|
A:ASP404
|
4.4
|
77.1
|
1.0
|
|
CB
|
A:ASP396
|
4.5
|
96.1
|
1.0
|
|
N
|
A:ARG402
|
4.5
|
95.2
|
1.0
|
|
N
|
A:ILE403
|
4.5
|
78.9
|
1.0
|
|
CA
|
A:ARG402
|
4.5
|
83.4
|
1.0
|
|
CA
|
A:ASP398
|
4.5
|
0.3
|
1.0
|
|
CA
|
A:ILE403
|
4.6
|
79.3
|
1.0
|
|
CB
|
A:ARG402
|
4.6
|
85.0
|
1.0
|
|
CA
|
A:ASP396
|
4.6
|
86.2
|
1.0
|
|
N
|
A:GLY399
|
4.7
|
93.7
|
1.0
|
|
C
|
A:ASP398
|
4.8
|
98.4
|
1.0
|
|
C
|
A:ILE403
|
4.8
|
78.2
|
1.0
|
|
C
|
A:ASP396
|
4.9
|
86.5
|
1.0
|
|
CG
|
A:ASP404
|
4.9
|
77.4
|
1.0
|
|
CB
|
A:ASP404
|
4.9
|
85.8
|
1.0
|
|
N
|
A:ASP400
|
5.0
|
81.9
|
1.0
|
|
Calcium binding site 5 out
of 10 in 6xu4
Go back to
Calcium Binding Sites List in 6xu4
Calcium binding site 5 out
of 10 in the Crystal Structure of the Genetically-Encoded Fgcamp Calcium Indicator in Its Calcium-Bound State
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 5 of Crystal Structure of the Genetically-Encoded Fgcamp Calcium Indicator in Its Calcium-Bound State within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ca501
b:0.1
occ:1.00
|
OE1
|
B:GLU298
|
2.3
|
0.6
|
1.0
|
|
OD1
|
B:ASP287
|
2.3
|
84.9
|
1.0
|
|
OE2
|
B:GLU298
|
2.3
|
0.2
|
1.0
|
|
O
|
B:GLN293
|
2.3
|
97.0
|
1.0
|
|
OD1
|
B:ASP289
|
2.3
|
0.1
|
1.0
|
|
OD1
|
B:ASP291
|
2.4
|
0.5
|
1.0
|
|
OD2
|
B:ASP289
|
2.4
|
90.4
|
1.0
|
|
CD
|
B:GLU298
|
2.6
|
0.6
|
1.0
|
|
CG
|
B:ASP289
|
2.6
|
79.0
|
1.0
|
|
CG
|
B:ASP291
|
2.8
|
96.4
|
1.0
|
|
OD2
|
B:ASP291
|
2.8
|
97.4
|
1.0
|
|
CG
|
B:ASP287
|
3.6
|
94.2
|
1.0
|
|
C
|
B:GLN293
|
3.6
|
94.2
|
1.0
|
|
CB
|
B:ASP291
|
4.0
|
85.9
|
1.0
|
|
CB
|
B:ASP289
|
4.1
|
72.2
|
1.0
|
|
CG
|
B:GLU298
|
4.1
|
99.5
|
1.0
|
|
N
|
B:ASP291
|
4.2
|
90.7
|
1.0
|
|
N
|
B:GLN293
|
4.3
|
89.1
|
1.0
|
|
CA
|
B:ASP287
|
4.4
|
94.7
|
1.0
|
|
CA
|
B:GLN293
|
4.4
|
89.5
|
1.0
|
|
CB
|
B:ASP287
|
4.4
|
98.6
|
1.0
|
|
OD2
|
B:ASP287
|
4.5
|
83.1
|
1.0
|
|
CG2
|
B:THR295
|
4.5
|
90.5
|
1.0
|
|
N
|
B:GLY290
|
4.6
|
94.0
|
1.0
|
|
CB
|
B:GLN293
|
4.6
|
96.4
|
1.0
|
|
N
|
B:ILE294
|
4.6
|
94.9
|
1.0
|
|
N
|
B:ASP289
|
4.6
|
89.2
|
1.0
|
|
CA
|
B:ASP291
|
4.6
|
91.3
|
1.0
|
|
C
|
B:ASP287
|
4.7
|
97.6
|
1.0
|
|
CA
|
B:ASP289
|
4.7
|
78.1
|
1.0
|
|
CA
|
B:ILE294
|
4.8
|
87.2
|
1.0
|
|
N
|
B:THR295
|
4.9
|
99.7
|
1.0
|
|
C
|
B:ASP289
|
4.9
|
81.0
|
1.0
|
|
Calcium binding site 6 out
of 10 in 6xu4
Go back to
Calcium Binding Sites List in 6xu4
Calcium binding site 6 out
of 10 in the Crystal Structure of the Genetically-Encoded Fgcamp Calcium Indicator in Its Calcium-Bound State
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 6 of Crystal Structure of the Genetically-Encoded Fgcamp Calcium Indicator in Its Calcium-Bound State within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ca502
b:98.5
occ:1.00
|
OD1
|
B:ASP323
|
2.3
|
91.7
|
1.0
|
|
OD1
|
B:ASN327
|
2.3
|
0.4
|
1.0
|
|
OD1
|
B:ASP325
|
2.3
|
97.2
|
1.0
|
|
O
|
B:THR329
|
2.3
|
98.9
|
1.0
|
|
OE1
|
B:GLU334
|
2.4
|
0.2
|
1.0
|
|
OE2
|
B:GLU334
|
2.4
|
0.7
|
1.0
|
|
CD
|
B:GLU334
|
2.7
|
90.7
|
1.0
|
|
CG
|
B:ASN327
|
3.3
|
0.6
|
1.0
|
|
CG
|
B:ASP325
|
3.4
|
90.0
|
1.0
|
|
CG
|
B:ASP323
|
3.6
|
0.1
|
1.0
|
|
C
|
B:THR329
|
3.6
|
92.0
|
1.0
|
|
OD2
|
B:ASP331
|
3.6
|
99.7
|
1.0
|
|
CB
|
B:ASN327
|
3.7
|
0.3
|
1.0
|
|
OD2
|
B:ASP325
|
3.7
|
91.0
|
1.0
|
|
CG
|
B:GLU334
|
4.2
|
85.4
|
1.0
|
|
CA
|
B:ASP323
|
4.3
|
0.7
|
1.0
|
|
N
|
B:ASN327
|
4.3
|
95.8
|
1.0
|
|
OG1
|
B:THR329
|
4.3
|
0.6
|
1.0
|
|
CB
|
B:ASP323
|
4.3
|
1.0
|
1.0
|
|
N
|
B:ASP331
|
4.4
|
81.7
|
1.0
|
|
N
|
B:THR329
|
4.4
|
0.5
|
1.0
|
|
CG
|
B:ASP331
|
4.4
|
89.7
|
1.0
|
|
N
|
B:ILE330
|
4.4
|
81.0
|
1.0
|
|
OD2
|
B:ASP323
|
4.5
|
0.9
|
1.0
|
|
CA
|
B:ILE330
|
4.5
|
78.9
|
1.0
|
|
CA
|
B:THR329
|
4.5
|
0.7
|
1.0
|
|
ND2
|
B:ASN327
|
4.6
|
0.5
|
1.0
|
|
OE1
|
B:GLN293
|
4.6
|
0.1
|
1.0
|
|
CA
|
B:ASN327
|
4.6
|
0.7
|
1.0
|
|
N
|
B:ASP325
|
4.6
|
96.0
|
1.0
|
|
CB
|
B:ASP325
|
4.7
|
98.9
|
1.0
|
|
C
|
B:ASP323
|
4.7
|
0.6
|
1.0
|
|
C
|
B:ILE330
|
4.8
|
77.9
|
1.0
|
|
N
|
B:ALA324
|
4.9
|
0.7
|
1.0
|
|
N
|
B:ASN326
|
4.9
|
98.5
|
1.0
|
|
N
|
B:GLY328
|
5.0
|
0.1
|
1.0
|
|
CA
|
B:ASP325
|
5.0
|
98.3
|
1.0
|
|
Calcium binding site 7 out
of 10 in 6xu4
Go back to
Calcium Binding Sites List in 6xu4
Calcium binding site 7 out
of 10 in the Crystal Structure of the Genetically-Encoded Fgcamp Calcium Indicator in Its Calcium-Bound State
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 7 of Crystal Structure of the Genetically-Encoded Fgcamp Calcium Indicator in Its Calcium-Bound State within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ca503
b:94.9
occ:1.00
|
O
|
B:PHE366
|
2.3
|
77.4
|
1.0
|
|
OD1
|
B:ASP362
|
2.3
|
0.6
|
1.0
|
|
OD1
|
B:ASP360
|
2.3
|
74.0
|
1.0
|
|
OE1
|
B:GLU371
|
2.3
|
89.2
|
1.0
|
|
OD1
|
B:ASN364
|
2.3
|
0.8
|
1.0
|
|
OE2
|
B:GLU371
|
2.3
|
89.2
|
1.0
|
|
OD2
|
B:ASP362
|
2.3
|
0.2
|
1.0
|
|
CG
|
B:ASP362
|
2.5
|
0.7
|
1.0
|
|
CD
|
B:GLU371
|
2.6
|
93.8
|
1.0
|
|
CG
|
B:ASN364
|
3.2
|
0.1
|
1.0
|
|
CG
|
B:ASP360
|
3.5
|
73.4
|
1.0
|
|
C
|
B:PHE366
|
3.5
|
79.1
|
1.0
|
|
CB
|
B:ASP362
|
3.8
|
91.8
|
1.0
|
|
ND2
|
B:ASN364
|
3.8
|
1.0
|
1.0
|
|
CG
|
B:GLU371
|
4.1
|
96.5
|
1.0
|
|
N
|
B:ASP362
|
4.1
|
92.3
|
1.0
|
|
CA
|
B:ASP360
|
4.2
|
68.6
|
1.0
|
|
CB
|
B:ASN364
|
4.3
|
90.7
|
1.0
|
|
CB
|
B:ASP360
|
4.3
|
68.1
|
1.0
|
|
N
|
B:ASN364
|
4.4
|
80.4
|
1.0
|
|
N
|
B:ASN363
|
4.4
|
92.3
|
1.0
|
|
OD2
|
B:ASP360
|
4.4
|
82.7
|
1.0
|
|
N
|
B:ILE367
|
4.4
|
84.1
|
1.0
|
|
C
|
B:ASP360
|
4.4
|
69.1
|
1.0
|
|
N
|
B:SER368
|
4.4
|
88.0
|
1.0
|
|
CA
|
B:ASP362
|
4.4
|
87.3
|
1.0
|
|
CA
|
B:ILE367
|
4.4
|
87.7
|
1.0
|
|
N
|
B:PHE366
|
4.5
|
79.7
|
1.0
|
|
CA
|
B:PHE366
|
4.5
|
83.8
|
1.0
|
|
NH2
|
B:ARG402
|
4.5
|
56.7
|
0.5
|
|
N
|
B:ARG361
|
4.6
|
77.7
|
1.0
|
|
OG
|
B:SER368
|
4.7
|
73.0
|
1.0
|
|
O
|
B:ASP360
|
4.8
|
62.1
|
1.0
|
|
C
|
B:ASP362
|
4.8
|
91.2
|
1.0
|
|
C
|
B:ILE367
|
4.8
|
91.1
|
1.0
|
|
CA
|
B:ASN364
|
4.9
|
83.5
|
1.0
|
|
CB
|
B:PHE366
|
4.9
|
89.2
|
1.0
|
|
CB
|
B:GLU371
|
5.0
|
97.7
|
1.0
|
|
CB
|
B:SER368
|
5.0
|
82.5
|
1.0
|
|
Calcium binding site 8 out
of 10 in 6xu4
Go back to
Calcium Binding Sites List in 6xu4
Calcium binding site 8 out
of 10 in the Crystal Structure of the Genetically-Encoded Fgcamp Calcium Indicator in Its Calcium-Bound State
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 8 of Crystal Structure of the Genetically-Encoded Fgcamp Calcium Indicator in Its Calcium-Bound State within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ca504
b:97.0
occ:1.00
|
OD1
|
B:ASP400
|
2.3
|
0.2
|
1.0
|
|
OD1
|
B:ASP396
|
2.3
|
0.6
|
1.0
|
|
O
|
B:ARG402
|
2.3
|
81.2
|
1.0
|
|
OE1
|
B:GLU407
|
2.3
|
0.8
|
1.0
|
|
OD1
|
B:ASP398
|
2.4
|
0.1
|
1.0
|
|
OD2
|
B:ASP400
|
2.4
|
96.1
|
1.0
|
|
OE2
|
B:GLU407
|
2.4
|
82.2
|
1.0
|
|
OD2
|
B:ASP398
|
2.6
|
0.8
|
1.0
|
|
CG
|
B:ASP400
|
2.6
|
0.4
|
1.0
|
|
CG
|
B:ASP398
|
2.7
|
0.1
|
1.0
|
|
CD
|
B:GLU407
|
2.7
|
93.6
|
1.0
|
|
CG
|
B:ASP396
|
3.5
|
1.0
|
1.0
|
|
C
|
B:ARG402
|
3.6
|
86.5
|
1.0
|
|
CB
|
B:ASP398
|
4.0
|
0.1
|
1.0
|
|
CB
|
B:ASP400
|
4.1
|
0.8
|
1.0
|
|
CG
|
B:GLU407
|
4.2
|
89.7
|
1.0
|
|
OD2
|
B:ASP396
|
4.3
|
0.4
|
1.0
|
|
OD2
|
B:ASP404
|
4.3
|
93.7
|
1.0
|
|
N
|
B:ASP398
|
4.4
|
0.1
|
1.0
|
|
N
|
B:ASP404
|
4.4
|
89.1
|
1.0
|
|
CB
|
B:ASP396
|
4.4
|
0.4
|
1.0
|
|
N
|
B:ILE403
|
4.5
|
84.3
|
1.0
|
|
N
|
B:ARG402
|
4.5
|
0.6
|
1.0
|
|
CA
|
B:ILE403
|
4.5
|
97.1
|
1.0
|
|
CA
|
B:ARG402
|
4.6
|
88.9
|
1.0
|
|
CA
|
B:ASP396
|
4.6
|
0.8
|
1.0
|
|
CA
|
B:ASP398
|
4.6
|
0.8
|
1.0
|
|
N
|
B:GLY399
|
4.7
|
0.4
|
1.0
|
|
C
|
B:ILE403
|
4.8
|
93.4
|
1.0
|
|
CG
|
B:ARG402
|
4.8
|
72.7
|
0.5
|
|
C
|
B:ASP398
|
4.8
|
0.6
|
1.0
|
|
C
|
B:ASP396
|
4.9
|
0.2
|
1.0
|
|
N
|
B:ASP400
|
4.9
|
0.2
|
1.0
|
|
CB
|
B:ASP404
|
5.0
|
90.4
|
1.0
|
|
CG
|
B:ASP404
|
5.0
|
88.2
|
1.0
|
|
Calcium binding site 9 out
of 10 in 6xu4
Go back to
Calcium Binding Sites List in 6xu4
Calcium binding site 9 out
of 10 in the Crystal Structure of the Genetically-Encoded Fgcamp Calcium Indicator in Its Calcium-Bound State
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 9 of Crystal Structure of the Genetically-Encoded Fgcamp Calcium Indicator in Its Calcium-Bound State within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Ca501
b:0.5
occ:1.00
|
O
|
E:GLN293
|
2.3
|
92.7
|
1.0
|
|
OD1
|
E:ASP287
|
2.3
|
0.1
|
1.0
|
|
OE1
|
E:GLU298
|
2.3
|
0.5
|
1.0
|
|
OE2
|
E:GLU298
|
2.3
|
0.9
|
1.0
|
|
OD1
|
E:ASP291
|
2.3
|
0.1
|
1.0
|
|
OD1
|
E:ASP289
|
2.4
|
0.4
|
1.0
|
|
OD2
|
E:ASP289
|
2.5
|
0.1
|
1.0
|
|
CD
|
E:GLU298
|
2.6
|
0.5
|
1.0
|
|
CG
|
E:ASP289
|
2.7
|
0.3
|
1.0
|
|
CG
|
E:ASP291
|
2.7
|
0.3
|
1.0
|
|
OD2
|
E:ASP291
|
2.8
|
0.8
|
1.0
|
|
C
|
E:GLN293
|
3.5
|
0.5
|
1.0
|
|
CG
|
E:ASP287
|
3.5
|
0.9
|
1.0
|
|
CB
|
E:ASP291
|
4.0
|
0.6
|
1.0
|
|
CG
|
E:GLU298
|
4.1
|
0.7
|
1.0
|
|
CB
|
E:ASP289
|
4.2
|
0.1
|
1.0
|
|
N
|
E:ASP291
|
4.2
|
0.7
|
1.0
|
|
N
|
E:GLN293
|
4.3
|
0.9
|
1.0
|
|
CA
|
E:GLN293
|
4.3
|
0.0
|
1.0
|
|
CA
|
E:ASP287
|
4.3
|
1.0
|
1.0
|
|
CB
|
E:ASP287
|
4.4
|
0.6
|
1.0
|
|
OD2
|
E:ASP287
|
4.4
|
0.5
|
1.0
|
|
CB
|
E:GLN293
|
4.5
|
0.3
|
1.0
|
|
N
|
E:ILE294
|
4.5
|
0.2
|
1.0
|
|
N
|
E:GLY290
|
4.6
|
0.1
|
1.0
|
|
N
|
E:ASP289
|
4.6
|
0.4
|
1.0
|
|
CA
|
E:ASP291
|
4.6
|
0.1
|
1.0
|
|
C
|
E:ASP287
|
4.7
|
0.3
|
1.0
|
|
CA
|
E:ILE294
|
4.7
|
0.0
|
1.0
|
|
CA
|
E:ASP289
|
4.8
|
0.2
|
1.0
|
|
N
|
E:THR295
|
4.9
|
0.1
|
1.0
|
|
C
|
E:ASP289
|
5.0
|
0.4
|
1.0
|
|
Calcium binding site 10 out
of 10 in 6xu4
Go back to
Calcium Binding Sites List in 6xu4
Calcium binding site 10 out
of 10 in the Crystal Structure of the Genetically-Encoded Fgcamp Calcium Indicator in Its Calcium-Bound State
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 10 of Crystal Structure of the Genetically-Encoded Fgcamp Calcium Indicator in Its Calcium-Bound State within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Ca502
b:0.4
occ:1.00
|
OD1
|
E:ASP325
|
2.3
|
0.7
|
1.0
|
|
O
|
E:THR329
|
2.3
|
0.9
|
1.0
|
|
OE1
|
E:GLU334
|
2.3
|
0.9
|
1.0
|
|
OD1
|
E:ASN327
|
2.3
|
0.1
|
1.0
|
|
OE2
|
E:GLU334
|
2.3
|
0.5
|
1.0
|
|
OD1
|
E:ASP323
|
2.3
|
0.4
|
1.0
|
|
CD
|
E:GLU334
|
2.6
|
0.3
|
1.0
|
|
CG
|
E:ASP325
|
3.3
|
0.6
|
1.0
|
|
CG
|
E:ASN327
|
3.5
|
0.8
|
1.0
|
|
OD2
|
E:ASP331
|
3.5
|
0.1
|
1.0
|
|
CG
|
E:ASP323
|
3.6
|
0.0
|
1.0
|
|
C
|
E:THR329
|
3.6
|
0.8
|
1.0
|
|
OD2
|
E:ASP325
|
3.7
|
0.6
|
1.0
|
|
CG
|
E:GLU334
|
4.2
|
1.0
|
1.0
|
|
ND2
|
E:ASN327
|
4.2
|
0.3
|
1.0
|
|
CA
|
E:ASP323
|
4.2
|
0.7
|
1.0
|
|
CB
|
E:ASP323
|
4.3
|
0.3
|
1.0
|
|
N
|
E:ASP331
|
4.3
|
0.1
|
1.0
|
|
CG
|
E:ASP331
|
4.3
|
0.6
|
1.0
|
|
N
|
E:THR329
|
4.4
|
0.1
|
1.0
|
|
CA
|
E:ILE330
|
4.4
|
0.6
|
1.0
|
|
N
|
E:ILE330
|
4.4
|
0.8
|
1.0
|
|
OG1
|
E:THR329
|
4.4
|
0.5
|
1.0
|
|
N
|
E:ASN327
|
4.4
|
0.1
|
1.0
|
|
OD2
|
E:ASP323
|
4.5
|
0.3
|
1.0
|
|
CA
|
E:THR329
|
4.5
|
0.2
|
1.0
|
|
N
|
E:ASP325
|
4.6
|
0.9
|
1.0
|
|
CB
|
E:ASP325
|
4.6
|
0.4
|
1.0
|
|
CB
|
E:ASN327
|
4.7
|
0.8
|
1.0
|
|
C
|
E:ASP323
|
4.7
|
0.0
|
1.0
|
|
OE1
|
E:GLN293
|
4.7
|
0.3
|
1.0
|
|
N
|
E:ALA324
|
4.8
|
0.1
|
1.0
|
|
C
|
E:ILE330
|
4.8
|
0.1
|
1.0
|
|
CA
|
E:ASN327
|
4.9
|
0.9
|
1.0
|
|
N
|
E:ASN326
|
4.9
|
0.3
|
1.0
|
|
C
|
E:ASN327
|
4.9
|
0.3
|
1.0
|
|
OD1
|
E:ASP331
|
4.9
|
0.3
|
1.0
|
|
CA
|
E:ASP325
|
5.0
|
0.4
|
1.0
|
|
Reference:
K.M.Boyko,
A.Y.Nikolaeva,
D.A.Korzhenevskiy,
F.V.Subach,
O.M.Subach,
N.V.Barykina.
Crystal Structure of the Genetically-Encoded Fgcamp Calcium Indicator in Its Calcium-Bound State To Be Published.
Page generated: Tue Jul 16 18:16:45 2024
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