Calcium in PDB 6xux: Crystal Structure of Megabody Mb-NB207-CYGJK_NO

The structure of Crystal Structure of Megabody Mb-NB207-CYGJK_NO, PDB code: 6xux was solved by J.Steyaert, T.Uchanski, B.Fischer, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	42.14 / 1.90
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	67.45, 84.46, 140.32, 90, 90, 90
R / Rfree (%)	18.9 / 23

The binding sites of Calcium atom in the Crystal Structure of Megabody Mb-NB207-CYGJK_NO (pdb code 6xux). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Crystal Structure of Megabody Mb-NB207-CYGJK_NO, PDB code: 6xux:

Calcium binding site 1 out of 1 in the Crystal Structure of Megabody Mb-NB207-CYGJK_NO


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of Megabody Mb-NB207-CYGJK_NO within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca1001 b:16.7 occ:1.00 OE2 A:GLU765 2.1 14.5 1.0 OD1 A:ASN759 2.3 18.8 1.0 O A:VAL763 2.3 17.0 1.0 OD1 A:ASP757 2.4 20.4 1.0 OE2 A:GLU98 2.4 19.9 1.0 OD1 A:ASN761 2.4 16.8 1.0 CG A:ASN759 3.4 20.5 1.0 CD A:GLU765 3.4 12.3 1.0 C A:VAL763 3.4 20.5 1.0 CD A:GLU98 3.4 17.9 1.0 CG A:ASN761 3.5 11.2 1.0 CG A:ASP757 3.6 17.2 1.0 ND2 A:ASN759 3.8 22.4 1.0 CG A:GLU98 3.9 25.3 1.0 ND2 A:ASN761 4.0 18.9 1.0 N A:VAL763 4.0 17.4 1.0 CA A:VAL763 4.1 15.1 1.0 CB A:VAL763 4.2 23.0 1.0 OE1 A:GLU765 4.2 18.4 1.0 CG A:GLU765 4.3 17.3 1.0 CA A:ASP757 4.3 13.5 1.0 OD2 A:ASP757 4.4 23.6 1.0 N A:ASN759 4.4 20.4 1.0 N A:PRO764 4.5 20.3 1.0 OE1 A:GLU98 4.5 20.9 1.0 CB A:ASP757 4.5 20.7 1.0 N A:ASN761 4.5 18.9 1.0 CD1 A:ILE157 4.5 19.4 1.0 C A:ASP757 4.6 17.9 1.0 CB A:ASN759 4.7 23.9 1.0 N A:GLY760 4.7 23.1 1.0 N A:HIS758 4.7 19.2 1.0 CB A:ASN761 4.7 15.8 1.0 C A:PRO764 4.8 21.4 1.0 CA A:PRO764 4.8 25.0 1.0 CA A:ASN759 4.9 24.5 1.0 O A:PRO764 4.9 26.8 1.0 CG1 A:VAL763 4.9 25.8 1.0 N A:GLY762 4.9 23.5 1.0 C A:ASN759 4.9 25.0 1.0 CA A:ASN761 5.0 20.0 1.0

T.Uchanski, S.Masiulis, B.Fischer, V.Kalichuk, U.Lopez-Sanchez, E.Zarkadas, M.Weckener, A.Sente, P.Ward, A.Wohlkonig, T.Zogg, H.Remaut, J.H.Naismith, H.Nury, W.Vranken, A.R.Aricescu, E.Pardon, J.Steyaert. Megabodies Expand the Nanobody Toolkit For Protein Structure Determination By Single-Particle Cryo-Em. Nat.Methods V. 18 60 2021.
ISSN: ESSN 1548-7105
PubMed: 33408403
DOI: 10.1038/S41592-020-01001-6