Calcium in PDB 6yf6: Ecla C-Terminal Domain; Sugar-Binding Protein

The structure of Ecla C-Terminal Domain; Sugar-Binding Protein, PDB code: 6yf6 was solved by J.Koehnke, A.Sikandar, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	36.57 / 2.00
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	38.512, 63.671, 134.009, 90, 90, 90
R / Rfree (%)	19 / 23.7

The binding sites of Calcium atom in the Ecla C-Terminal Domain; Sugar-Binding Protein (pdb code 6yf6). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Ecla C-Terminal Domain; Sugar-Binding Protein, PDB code: 6yf6:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in the Ecla C-Terminal Domain; Sugar-Binding Protein


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Ecla C-Terminal Domain; Sugar-Binding Protein within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca302 b:21.9 occ:1.00 HO4 A:SFU301 2.0 28.3 1.0 OG1 A:THR181 2.3 27.3 1.0 O A:ILE180 2.4 24.3 1.0 O4 A:SFU301 2.4 23.4 1.0 O A:SER269 2.4 22.8 1.0 OD1 A:ASP273 2.5 23.9 1.0 O3 A:SFU301 2.5 26.2 1.0 O A:GLY271 2.6 24.2 1.0 O A:THR181 2.6 26.3 1.0 HO3 A:SFU301 3.1 31.7 1.0 C4 A:SFU301 3.2 27.3 1.0 H2 A:SFU301 3.3 26.4 1.0 C3 A:SFU301 3.3 23.7 1.0 C A:ILE180 3.4 21.9 1.0 CG A:ASP273 3.4 24.8 1.0 H4 A:SFU301 3.4 33.0 1.0 C A:THR181 3.5 26.2 1.0 CB A:THR181 3.5 24.6 1.0 C A:SER269 3.6 23.2 1.0 OD2 A:ASP273 3.7 24.9 1.0 C A:GLY271 3.7 26.3 1.0 HA A:SER269 3.7 30.2 1.0 H A:GLY271 3.8 33.6 1.0 HB A:THR181 3.8 29.8 1.0 CA A:THR181 3.8 24.0 1.0 C2 A:SFU301 3.8 21.7 1.0 N A:THR181 4.0 21.9 1.0 N A:GLY271 4.0 27.8 1.0 CA A:SER269 4.2 24.9 1.0 HG13 A:ILE180 4.2 34.3 1.0 H3 A:SFU301 4.2 28.8 1.0 HB2 A:SER269 4.2 31.0 1.0 HB3 A:ASN272 4.2 33.0 1.0 HA A:ILE180 4.3 30.4 1.0 CA A:GLY271 4.3 26.9 1.0 HA2 A:GLY271 4.3 32.5 1.0 O A:ASN272 4.4 22.5 1.0 CA A:ILE180 4.5 25.1 1.0 C A:ASN272 4.6 24.2 1.0 C5 A:SFU301 4.6 30.6 1.0 N A:ARG182 4.6 29.1 1.0 HA A:ARG182 4.7 38.1 1.0 N A:MET270 4.7 25.4 1.0 O2 A:SFU301 4.7 19.3 1.0 CG2 A:THR181 4.7 22.4 1.0 HO2 A:SFU301 4.7 23.5 1.0 HA A:MET270 4.7 33.9 1.0 C A:MET270 4.7 27.2 1.0 HG23 A:THR181 4.7 27.2 1.0 O A:HOH436 4.7 24.8 1.0 CB A:ASP273 4.7 24.1 1.0 HD12 A:ILE180 4.7 34.0 1.0 HA A:ASP273 4.7 28.8 1.0 CB A:SER269 4.8 25.6 1.0 HA A:THR181 4.8 29.1 1.0 N A:ASN272 4.8 26.3 1.0 H A:THR181 4.8 26.6 1.0 N A:ASP273 4.9 23.8 1.0 HG21 A:THR181 5.0 27.2 1.0 O5 A:SFU301 5.0 24.6 1.0 H62 A:SFU301 5.0 42.0 1.0 CA A:MET270 5.0 28.0 1.0 C1 A:SFU301 5.0 34.3 1.0

Calcium binding site 2 out of 2 in the Ecla C-Terminal Domain; Sugar-Binding Protein


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Ecla C-Terminal Domain; Sugar-Binding Protein within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca303 b:27.4 occ:1.00 HO4 B:SFU301 2.0 32.0 1.0 O B:ILE180 2.4 31.0 1.0 OG1 B:THR181 2.4 29.8 1.0 OD1 B:ASP273 2.4 30.0 1.0 O B:THR181 2.4 30.1 1.0 O B:SER269 2.5 30.0 1.0 O3 B:SFU301 2.5 26.1 1.0 O B:GLY271 2.5 28.9 1.0 O4 B:SFU301 2.6 26.4 1.0 HO3 B:SFU301 3.1 31.6 1.0 CG B:ASP273 3.3 30.0 1.0 H2 B:SFU301 3.3 31.5 1.0 C B:ILE180 3.4 28.9 1.0 C B:THR181 3.4 29.1 1.0 C4 B:SFU301 3.4 26.6 1.0 C3 B:SFU301 3.4 25.3 1.0 CB B:THR181 3.5 27.6 1.0 OD2 B:ASP273 3.6 29.6 1.0 C B:SER269 3.6 31.3 1.0 C B:GLY271 3.6 29.9 1.0 H4 B:SFU301 3.6 32.3 1.0 HA B:SER269 3.6 37.1 1.0 H B:GLY271 3.7 35.4 1.0 HB B:THR181 3.8 33.4 1.0 CA B:THR181 3.8 28.2 1.0 C2 B:SFU301 3.9 26.0 1.0 N B:THR181 4.0 26.1 1.0 N B:GLY271 4.0 29.2 1.0 HG13 B:ILE180 4.0 33.4 1.0 CA B:SER269 4.1 30.7 1.0 HB2 B:SER269 4.2 37.4 1.0 CA B:GLY271 4.3 29.2 1.0 HB3 B:ASN272 4.3 39.1 1.0 H3 B:SFU301 4.3 30.7 1.0 HA B:ILE180 4.3 31.7 1.0 HA2 B:GLY271 4.3 35.4 1.0 O B:ASN272 4.4 28.5 1.0 HA B:ARG182 4.5 35.5 1.0 CA B:ILE180 4.5 26.1 1.0 HD12 B:ILE180 4.5 34.5 1.0 C B:ASN272 4.5 29.8 1.0 N B:ARG182 4.5 30.8 1.0 CB B:ASP273 4.7 32.0 1.0 N B:MET270 4.7 34.6 1.0 HA B:ASP273 4.7 37.9 1.0 O2 B:SFU301 4.7 24.0 1.0 CB B:SER269 4.7 30.9 1.0 HA B:THR181 4.7 34.1 1.0 N B:ASN272 4.7 31.0 1.0 C5 B:SFU301 4.8 24.9 1.0 CG2 B:THR181 4.8 26.2 1.0 H B:THR181 4.8 31.7 1.0 C B:MET270 4.8 31.7 1.0 HO2 B:SFU301 4.8 29.1 1.0 N B:ASP273 4.8 30.1 1.0 HA B:MET270 4.8 43.6 1.0 CG1 B:ILE180 4.9 27.6 1.0 HG23 B:THR181 4.9 31.8 1.0 CA B:ASP273 5.0 31.4 1.0

J.Koehnke, A.Sikandar. Ecla C-Terminal Domain; Sugar-Binding Protein To Be Published.