Calcium in PDB 6yge: Nadase From Aspergillus Fumigatus

The structure of Nadase From Aspergillus Fumigatus, PDB code: 6yge was solved by O.Stromland, M.Ziegler, J.P.Kallio, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	86.00 / 1.60
Space group	P 32 2 1
Cell size a, b, c (Å), α, β, γ (°)	63.788, 63.788, 257.995, 90.00, 90.00, 120.00
R / Rfree (%)	17.8 / 21.1

The binding sites of Calcium atom in the Nadase From Aspergillus Fumigatus (pdb code 6yge). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Nadase From Aspergillus Fumigatus, PDB code: 6yge:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in the Nadase From Aspergillus Fumigatus


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Nadase From Aspergillus Fumigatus within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca309 b:34.8 occ:1.00 O B:HOH496 2.2 43.9 1.0 OE1 B:GLU220 2.3 49.5 1.0 OD1 B:ASP219 2.3 37.8 1.0 O B:SER216 2.3 38.9 1.0 O B:HOH568 2.4 39.2 1.0 OE2 B:GLU223 2.4 36.7 1.0 OE1 B:GLU223 2.7 35.1 1.0 CD B:GLU223 2.9 34.5 1.0 CD B:GLU220 3.3 54.7 1.0 CG B:ASP219 3.3 50.2 1.0 C B:SER216 3.5 35.3 1.0 CG B:GLU220 3.7 46.8 1.0 OD2 B:ASP219 3.7 58.4 1.0 O B:HOH542 4.3 48.4 1.0 CB B:GLU220 4.3 38.9 1.0 O B:HOH431 4.4 56.7 1.0 CA B:SER216 4.4 33.4 1.0 N B:GLU217 4.4 29.0 1.0 CG B:GLU223 4.4 29.0 1.0 OE2 B:GLU220 4.4 61.2 1.0 N B:ASP219 4.4 32.2 1.0 N B:GLU220 4.5 36.1 1.0 CA B:GLU217 4.5 36.0 1.0 CB B:ASP219 4.6 43.7 1.0 C B:GLU217 4.8 31.0 1.0 C B:ASP219 4.8 38.5 1.0 CA B:ASP219 4.9 33.7 1.0 CB B:SER216 4.9 36.9 1.0 N B:TYR218 4.9 29.6 1.0

Calcium binding site 2 out of 2 in the Nadase From Aspergillus Fumigatus


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Nadase From Aspergillus Fumigatus within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca306 b:38.1 occ:1.00 OE1 A:GLU220 2.2 55.9 1.0 O A:SER216 2.3 43.9 1.0 OD1 A:ASP219 2.3 41.3 1.0 O A:HOH552 2.4 46.0 1.0 OE2 A:GLU223 2.5 38.3 1.0 O A:HOH492 2.5 47.4 1.0 OE1 A:GLU223 2.7 36.1 1.0 CD A:GLU223 2.9 36.2 1.0 CD A:GLU220 3.3 59.1 1.0 CG A:ASP219 3.4 47.7 1.0 C A:SER216 3.5 43.4 1.0 CG A:GLU220 3.7 48.0 1.0 OD2 A:ASP219 3.8 51.6 1.0 CB A:GLU220 4.3 36.5 1.0 CG A:GLU223 4.4 30.9 1.0 CA A:SER216 4.4 44.2 1.0 OE2 A:GLU220 4.4 74.7 1.0 N A:ASP219 4.4 33.6 1.0 N A:GLU217 4.4 41.2 1.0 N A:GLU220 4.4 38.2 1.0 CA A:GLU217 4.5 37.4 1.0 O A:HOH452 4.5 55.1 1.0 CB A:ASP219 4.7 37.7 1.0 C A:GLU217 4.7 33.3 1.0 O A:HOH473 4.8 80.2 1.0 CB A:SER216 4.8 45.2 1.0 N A:TYR218 4.9 32.1 1.0 CA A:ASP219 4.9 33.4 1.0 C A:ASP219 4.9 41.8 1.0

O.Stromland, J.P.Kallio, A.Psichibul, R.H.Skoge, H.M.Hardardottir, L.J.Sverkeli, T.Heinekamp, M.Migaud, T.I.Gossmann, A.Brakhage, M.Ziegler. Conidial Nadases - A New Protein Family in Pathogenic Fungi To Be Published.