Calcium in PDB 6ygg: Nadase From Aspergillus Fumigatus Complexed with A Substrate Anologue

The structure of Nadase From Aspergillus Fumigatus Complexed with A Substrate Anologue, PDB code: 6ygg was solved by O.Stromland, M.Ziegler, J.P.Kallio, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	48.66 / 1.85
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	51.050, 64.318, 161.007, 90.00, 90.00, 90.00
R / Rfree (%)	18.5 / 22.6

The structure of Nadase From Aspergillus Fumigatus Complexed with A Substrate Anologue also contains other interesting chemical elements:

Sodium

(Na)

1 atom

The binding sites of Calcium atom in the Nadase From Aspergillus Fumigatus Complexed with A Substrate Anologue (pdb code 6ygg). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Nadase From Aspergillus Fumigatus Complexed with A Substrate Anologue, PDB code: 6ygg:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in the Nadase From Aspergillus Fumigatus Complexed with A Substrate Anologue


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Nadase From Aspergillus Fumigatus Complexed with A Substrate Anologue within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca307 b:37.5 occ:1.00 O A:SER216 2.2 29.5 1.0 OE2 A:GLU223 2.3 34.2 1.0 O A:HOH534 2.3 41.6 1.0 O A:HOH514 2.4 35.4 1.0 OD1 A:ASP219 2.4 38.7 1.0 OE2 A:GLU220 2.4 44.5 1.0 OE1 A:GLU223 2.7 29.8 1.0 CD A:GLU223 2.8 33.9 1.0 C A:SER216 3.4 32.0 1.0 CD A:GLU220 3.4 39.5 1.0 CG A:ASP219 3.5 36.7 1.0 CG A:GLU220 3.7 37.7 1.0 OD2 A:ASP219 3.9 38.4 1.0 O A:HOH589 4.2 52.9 1.0 CA A:SER216 4.3 31.8 1.0 CG A:GLU223 4.3 27.3 1.0 O A:HOH572 4.3 51.2 1.0 N A:GLU217 4.3 29.5 1.0 CA A:GLU217 4.3 27.5 1.0 O A:HOH491 4.4 46.3 1.0 N A:ASP219 4.5 35.2 1.0 CB A:GLU220 4.5 37.1 1.0 OE1 A:GLU220 4.6 42.9 1.0 N A:GLU220 4.6 28.9 1.0 C A:GLU217 4.7 26.0 1.0 O A:HOH568 4.7 59.5 1.0 CB A:SER216 4.8 33.4 1.0 CB A:ASP219 4.8 35.5 1.0 N A:TYR218 4.8 28.4 1.0 C A:ASP219 4.9 31.3 1.0 CA A:ASP219 5.0 34.7 1.0

Calcium binding site 2 out of 2 in the Nadase From Aspergillus Fumigatus Complexed with A Substrate Anologue


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Nadase From Aspergillus Fumigatus Complexed with A Substrate Anologue within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca511 b:27.5 occ:1.00 O B:SER216 2.3 28.5 1.0 OD1 B:ASP219 2.3 32.0 1.0 OE2 B:GLU223 2.3 27.0 1.0 OE1 B:GLU220 2.4 32.8 1.0 O B:HOH654 2.5 33.2 1.0 O B:HOH759 2.5 28.7 1.0 OE1 B:GLU223 2.6 23.9 1.0 CD B:GLU223 2.8 26.9 1.0 CG B:ASP219 3.4 26.6 1.0 CD B:GLU220 3.5 34.9 1.0 C B:SER216 3.5 23.5 1.0 OD2 B:ASP219 3.7 30.7 1.0 CG B:GLU220 3.9 31.6 1.0 CG B:GLU223 4.3 23.8 1.0 CA B:GLU217 4.3 21.4 1.0 N B:GLU217 4.3 24.3 1.0 CB B:GLU220 4.4 29.3 1.0 CA B:SER216 4.4 23.1 1.0 N B:ASP219 4.4 27.0 1.0 OE2 B:GLU220 4.6 45.1 1.0 O B:HOH727 4.6 50.4 1.0 N B:GLU220 4.6 24.2 1.0 C B:GLU217 4.6 26.1 1.0 CB B:ASP219 4.7 27.5 1.0 N B:TYR218 4.8 27.1 1.0 CA B:ASP219 4.9 28.1 1.0 C B:ASP219 4.9 26.3 1.0 CB B:SER216 4.9 27.1 1.0

O.Stromland, J.P.Kallio, A.Pschibul, R.Skoge, H.M.Hardardottir, L.J.Sverkeli, T.Heinekamp, M.Migaud, T.I.Gossmann, A.Brakhage, M.Ziegler. Conidial Nadases - A New Protein Family in Pathogenic Fungi To Be Published.