Calcium in PDB 6yii: Crystal Structure of A Class III Adenylyl Cyclase-Like Atp-Binding Protein From Pseudomonas Aeruginosa

The structure of Crystal Structure of A Class III Adenylyl Cyclase-Like Atp-Binding Protein From Pseudomonas Aeruginosa, PDB code: 6yii was solved by S.Moniot, C.Steegborn, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	30.54 / 1.44
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	62.400, 74.680, 149.680, 90.00, 90.00, 90.00
R / Rfree (%)	13.1 / 14.7

The structure of Crystal Structure of A Class III Adenylyl Cyclase-Like Atp-Binding Protein From Pseudomonas Aeruginosa also contains other interesting chemical elements:

Magnesium	(Mg)	1 atom
Manganese	(Mn)	1 atom
Sodium	(Na)	3 atoms

The binding sites of Calcium atom in the Crystal Structure of A Class III Adenylyl Cyclase-Like Atp-Binding Protein From Pseudomonas Aeruginosa (pdb code 6yii). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Crystal Structure of A Class III Adenylyl Cyclase-Like Atp-Binding Protein From Pseudomonas Aeruginosa, PDB code: 6yii:

Calcium binding site 1 out of 1 in the Crystal Structure of A Class III Adenylyl Cyclase-Like Atp-Binding Protein From Pseudomonas Aeruginosa


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of A Class III Adenylyl Cyclase-Like Atp-Binding Protein From Pseudomonas Aeruginosa within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca603 b:16.6 occ:1.00 OD1 A:ASP291 2.3 17.9 1.0 O A:HOH1010 2.4 17.8 1.0 O2G A:ATP601 2.4 16.5 1.0 OD2 A:ASP339 2.4 18.2 1.0 O A:ILE292 2.4 18.0 1.0 OD1 A:ASP339 2.5 18.0 1.0 O3G A:ATP601 2.5 17.7 1.0 CG A:ASP339 2.8 18.1 1.0 PG A:ATP601 3.0 17.2 1.0 CG A:ASP291 3.4 16.8 1.0 C A:ILE292 3.4 17.3 1.0 HB3 A:PHE295 3.5 21.8 1.0 H A:ILE292 3.7 20.0 1.0 OD2 A:ASP291 3.8 17.9 1.0 HG1 A:THR296 3.8 21.8 1.0 N A:ILE292 3.9 16.7 1.0 H A:PHE295 3.9 22.3 1.0 HB A:ILE292 3.9 21.3 1.0 HA A:ASP293 3.9 22.5 1.0 MN A:MN602 4.0 17.9 1.0 O3B A:ATP601 4.1 18.8 1.0 CA A:ILE292 4.1 17.0 1.0 H A:THR296 4.1 21.1 1.0 HB2 A:PHE295 4.2 21.8 1.0 O2A A:ATP601 4.2 16.2 1.0 O A:HOH791 4.2 18.8 1.0 O1G A:ATP601 4.2 18.1 1.0 CB A:PHE295 4.3 18.2 1.0 CB A:ASP339 4.3 17.9 1.0 N A:ASP293 4.3 18.3 1.0 HB2 A:CYS340 4.4 21.3 1.0 C A:ASP291 4.5 17.3 1.0 HA A:ASP291 4.5 20.2 1.0 CB A:ILE292 4.5 17.8 1.0 CA A:ASP293 4.6 18.8 1.0 CB A:ASP291 4.6 16.3 1.0 N A:PHE295 4.6 18.6 1.0 OG1 A:THR296 4.6 18.2 1.0 H A:ASP339 4.7 21.1 1.0 HB3 A:ASP339 4.7 21.5 1.0 HB2 A:ASP339 4.7 21.5 1.0 O A:HOH835 4.7 19.3 1.0 H A:GLY294 4.7 22.1 1.0 CA A:ASP291 4.8 16.8 1.0 N A:THR296 4.8 17.6 1.0 CA A:PHE295 5.0 18.2 1.0

J.Linder, E.Hupfeld, M.Weyand, C.Steegborn, S.Moniot. Crystal Structure of A Class III Adenylyl Cyclase-Like Atp-Binding Protein From Pseudomonas Aeruginosa. J.Struct.Biol. 07534 2020.
ISSN: ESSN 1095-8657
PubMed: 32454240
DOI: 10.1016/J.JSB.2020.107534