Calcium in PDB 6zmb: Structure of the Native Trna-Monooxygenase Enzyme Miae

The structure of Structure of the Native Trna-Monooxygenase Enzyme Miae, PDB code: 6zmb was solved by P.Carpentier, M.Atta, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	46.75 / 1.70
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	116.797, 50.929, 76.258, 90.00, 91.00, 90.00
R / Rfree (%)	18.8 / 21.7

The structure of Structure of the Native Trna-Monooxygenase Enzyme Miae also contains other interesting chemical elements:

Iron	(Fe)	4 atoms
Chlorine	(Cl)	2 atoms

The binding sites of Calcium atom in the Structure of the Native Trna-Monooxygenase Enzyme Miae (pdb code 6zmb). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Structure of the Native Trna-Monooxygenase Enzyme Miae, PDB code: 6zmb:

Calcium binding site 1 out of 1 in the Structure of the Native Trna-Monooxygenase Enzyme Miae


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Structure of the Native Trna-Monooxygenase Enzyme Miae within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca305 b:28.7 occ:1.00 O B:HOH427 2.3 31.6 1.0 O B:ASP8 2.3 33.3 1.0 O B:LEU11 2.4 29.4 1.0 C B:ASP8 3.5 31.6 1.0 C B:LEU11 3.6 29.7 1.0 O B:ALA9 4.0 29.7 1.0 CA B:ALA9 4.2 32.2 1.0 C B:ALA9 4.3 33.9 1.0 N B:ALA9 4.3 31.5 1.0 C B:GLY12 4.4 30.9 1.0 N B:GLY12 4.5 29.5 1.0 O B:HOH438 4.5 34.3 1.0 N B:LEU11 4.5 29.7 1.0 CA B:GLY12 4.5 29.6 1.0 CA B:LEU11 4.5 22.4 1.0 N B:CYS13 4.5 29.6 1.0 CA B:ASP8 4.6 32.5 1.0 O B:GLY12 4.7 33.0 1.0 CB B:LEU11 4.9 26.5 1.0

P.Carpentier, C.Lepretre, C.Basset, T.Douki, S.Torelli, V.Duarte, D.Hamdane, M.Fontecave, M.Atta. Structural, Biochemical and Functional Analyses of Trna-Monooxygenase Enzyme Miae From Pseudomonas Putida Provide Insights Into Trna/Miae Interaction. Nucleic Acids Res. V. 48 9918 2020.
ISSN: ESSN 1362-4962
PubMed: 32785618
DOI: 10.1093/NAR/GKAA667