Calcium in PDB 6zmc: Structure of the Trna-Monooxygenase Enzyme Miae Frozen Under 2000 Bar Using the High Pressure Freezing Method

The structure of Structure of the Trna-Monooxygenase Enzyme Miae Frozen Under 2000 Bar Using the High Pressure Freezing Method, PDB code: 6zmc was solved by P.Carpentier, M.Atta, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	47.52 / 2.50
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	117.388, 51.909, 78.978, 90.00, 90.36, 90.00
R / Rfree (%)	18.2 / 24.5

The structure of Structure of the Trna-Monooxygenase Enzyme Miae Frozen Under 2000 Bar Using the High Pressure Freezing Method also contains other interesting chemical elements:

Argon	(Ar)	1 atom
Iron	(Fe)	4 atoms
Chlorine	(Cl)	1 atom

The binding sites of Calcium atom in the Structure of the Trna-Monooxygenase Enzyme Miae Frozen Under 2000 Bar Using the High Pressure Freezing Method (pdb code 6zmc). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Structure of the Trna-Monooxygenase Enzyme Miae Frozen Under 2000 Bar Using the High Pressure Freezing Method, PDB code: 6zmc:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in the Structure of the Trna-Monooxygenase Enzyme Miae Frozen Under 2000 Bar Using the High Pressure Freezing Method


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Structure of the Trna-Monooxygenase Enzyme Miae Frozen Under 2000 Bar Using the High Pressure Freezing Method within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca304 b:66.4 occ:1.00 O B:ASP8 2.3 62.4 1.0 O B:HOH411 2.4 69.2 1.0 O B:LEU11 2.4 62.3 1.0 C B:ASP8 3.5 63.5 1.0 C B:LEU11 3.7 68.0 1.0 O B:ALA9 4.0 67.2 1.0 CA B:ALA9 4.2 66.2 1.0 N B:ALA9 4.3 63.9 1.0 C B:ALA9 4.3 64.7 1.0 C B:GLY12 4.5 66.6 1.0 N B:LEU11 4.5 63.2 1.0 CA B:ASP8 4.6 67.3 1.0 N B:GLY12 4.6 66.0 1.0 CA B:LEU11 4.6 66.4 1.0 CA B:GLY12 4.7 59.2 1.0 N B:CYS13 4.7 62.1 1.0 O B:GLY12 4.8 72.6 1.0

Calcium binding site 2 out of 2 in the Structure of the Trna-Monooxygenase Enzyme Miae Frozen Under 2000 Bar Using the High Pressure Freezing Method


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Structure of the Trna-Monooxygenase Enzyme Miae Frozen Under 2000 Bar Using the High Pressure Freezing Method within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca305 b:0.9 occ:1.00 O B:HOH410 2.8 82.4 1.0 O B:HOH405 2.8 0.3 1.0 O B:GLY84 4.8 83.6 1.0

P.Carpentier, C.Lepretre, C.Basset, T.Douki, S.Torelli, V.Duarte, D.Hamdane, M.Fontecave, M.Atta. Structural, Biochemical and Functional Analyses of Trna-Monooxygenase Enzyme Miae From Pseudomonas Putida Provide Insights Into Trna/Miae Interaction. Nucleic Acids Res. V. 48 9918 2020.
ISSN: ESSN 1362-4962
PubMed: 32785618
DOI: 10.1093/NAR/GKAA667