Calcium in PDB 6zmc: Structure of the Trna-Monooxygenase Enzyme Miae Frozen Under 2000 Bar Using the High Pressure Freezing Method

Protein crystallography data

The structure of Structure of the Trna-Monooxygenase Enzyme Miae Frozen Under 2000 Bar Using the High Pressure Freezing Method, PDB code: 6zmc was solved by P.Carpentier, M.Atta, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 47.52 / 2.50
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 117.388, 51.909, 78.978, 90.00, 90.36, 90.00
R / Rfree (%) 18.2 / 24.5

Other elements in 6zmc:

The structure of Structure of the Trna-Monooxygenase Enzyme Miae Frozen Under 2000 Bar Using the High Pressure Freezing Method also contains other interesting chemical elements:

Argon (Ar) 1 atom
Iron (Fe) 4 atoms
Chlorine (Cl) 1 atom

Calcium Binding Sites:

The binding sites of Calcium atom in the Structure of the Trna-Monooxygenase Enzyme Miae Frozen Under 2000 Bar Using the High Pressure Freezing Method (pdb code 6zmc). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Structure of the Trna-Monooxygenase Enzyme Miae Frozen Under 2000 Bar Using the High Pressure Freezing Method, PDB code: 6zmc:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in 6zmc

Go back to Calcium Binding Sites List in 6zmc
Calcium binding site 1 out of 2 in the Structure of the Trna-Monooxygenase Enzyme Miae Frozen Under 2000 Bar Using the High Pressure Freezing Method


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Structure of the Trna-Monooxygenase Enzyme Miae Frozen Under 2000 Bar Using the High Pressure Freezing Method within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca304

b:66.4
occ:1.00
O B:ASP8 2.3 62.4 1.0
O B:HOH411 2.4 69.2 1.0
O B:LEU11 2.4 62.3 1.0
C B:ASP8 3.5 63.5 1.0
C B:LEU11 3.7 68.0 1.0
O B:ALA9 4.0 67.2 1.0
CA B:ALA9 4.2 66.2 1.0
N B:ALA9 4.3 63.9 1.0
C B:ALA9 4.3 64.7 1.0
C B:GLY12 4.5 66.6 1.0
N B:LEU11 4.5 63.2 1.0
CA B:ASP8 4.6 67.3 1.0
N B:GLY12 4.6 66.0 1.0
CA B:LEU11 4.6 66.4 1.0
CA B:GLY12 4.7 59.2 1.0
N B:CYS13 4.7 62.1 1.0
O B:GLY12 4.8 72.6 1.0

Calcium binding site 2 out of 2 in 6zmc

Go back to Calcium Binding Sites List in 6zmc
Calcium binding site 2 out of 2 in the Structure of the Trna-Monooxygenase Enzyme Miae Frozen Under 2000 Bar Using the High Pressure Freezing Method


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Structure of the Trna-Monooxygenase Enzyme Miae Frozen Under 2000 Bar Using the High Pressure Freezing Method within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca305

b:0.9
occ:1.00
O B:HOH410 2.8 82.4 1.0
O B:HOH405 2.8 0.3 1.0
O B:GLY84 4.8 83.6 1.0

Reference:

P.Carpentier, C.Lepretre, C.Basset, T.Douki, S.Torelli, V.Duarte, D.Hamdane, M.Fontecave, M.Atta. Structural, Biochemical and Functional Analyses of Trna-Monooxygenase Enzyme Miae From Pseudomonas Putida Provide Insights Into Trna/Miae Interaction. Nucleic Acids Res. V. 48 9918 2020.
ISSN: ESSN 1362-4962
PubMed: 32785618
DOI: 10.1093/NAR/GKAA667
Page generated: Sat Dec 12 07:59:30 2020

Last articles

Zn in 7M6U
Zn in 7NNG
Zn in 7NEE
Zn in 7NEU
Zn in 7M3K
Zn in 7KWD
Zn in 7KYH
Zn in 7KNG
Zn in 7KY2
Zn in 7KYF
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy